EY659785

Overview
NameEY659785
Unique NameEY659785
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659785_ssr438 microsatellite EY659785_ssr438:438..449. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7505 contig Csv1_Contig7505:1..945. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_GEOLS (30S ribosomal protein S5 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.124e-15
Identity = 54/153 (35.29%), Postives = 80/153 (52.29%), Query Frame = 2
Query:  362 LKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFE--CLLKTYGFLT 814
            L D V+    V K  + G+R  F A VVVGD  GHVG G+  + EV  AIR  +  AK ++I V        + +  ++P ++ G+ G+  + M PA  G G++A   ++ + + AGI ++ +   GS     N VKA FE   LLKT   LT
Sbjct:   11 LTDRVVHISRVAKVVKGGRRFSFSALVVVGDASGHVGYGLGKANEVPEAIRKGVEQAKKNLIKV-------PVNQNQSIPYEIIGRFGAGRILMKPASPGTGVIAGGAARAIFEAAGISNILSKCLGSNNP-HNVVKAAFEGLRLLKTPEELT 155          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_BACSK (30S ribosomal protein S5 OS=Bacillus clausii (strain KSM-K16) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.124e-15
Identity = 52/139 (37.41%), Postives = 80/139 (57.55%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKA 775
            +L+++V+    V K  + G+R RF A VVVGD +GHVG G+  ++EV  AIR A+  AK ++I V             T+P ++ G+ G+  V + PA  G G++A    + VL+ AGI DV + S GS+  + N V+A
Sbjct:   10 ELEEKVVTINRVAKVVKGGRRFRFAALVVVGDKNGHVGFGMGKAQEVPEAIRKAVEDAKKNLIEVPI--------VNTTIPHQIVGRFGAGRVFLKPASEGTGVIAGGPVRAVLELAGIGDVLSKSLGSSNPI-NMVRA 139          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_ANATD (30S ribosomal protein S5 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.124e-15
Identity = 56/146 (38.36%), Postives = 75/146 (51.37%), Query Frame = 2
Query:  353 GHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            G  LK+ V+    V K  + G+R +F A VVVGD +GHVG G   + E+  AIR AI  AK  +I V        +G   T+P +  G  G+  V + PAP G G++A    + V + AGI D+ T S GS     N V A  E L
Sbjct:   10 GLDLKERVVNINRVAKVVKGGKRLKFSAIVVVGDENGHVGAGHGKAAEIPDAIRKAIEDAKKHLIEV------PIVGT--TIPHEAIGDFGASKVLIKPAPEGTGVIAGGAVRAVCELAGIKDIRTKSLGSNNP-ANVVHATIEAL 146          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_BACLD (30S ribosomal protein S5 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.192e-14
Identity = 49/144 (34.03%), Postives = 81/144 (56.25%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            +L++ ++    V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR A+  AK ++I V        +G   T+P ++ G+ G+  + + PA  G G++A    + VL+ AG+ D+ + S GS   + N ++A  + L
Sbjct:   12 ELEERLVTVNRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLIEV------PMVGT--TIPHEIIGRFGAGNILLKPASEGTGVIAGGPVRAVLELAGVSDILSKSLGSNTPI-NMIRATVQGL 146          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_STAAW (30S ribosomal protein S5 OS=Staphylococcus aureus (strain MW2) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.556e-14
Identity = 52/144 (36.11%), Postives = 77/144 (53.47%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            + ++ V+    V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+A  + L
Sbjct:   10 EFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATIDGL 144          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_STAAT (30S ribosomal protein S5 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.556e-14
Identity = 52/144 (36.11%), Postives = 77/144 (53.47%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            + ++ V+    V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+A  + L
Sbjct:   10 EFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATIDGL 144          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_STAAS (30S ribosomal protein S5 OS=Staphylococcus aureus (strain MSSA476) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.556e-14
Identity = 52/144 (36.11%), Postives = 77/144 (53.47%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            + ++ V+    V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+A  + L
Sbjct:   10 EFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATIDGL 144          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_STAAR (30S ribosomal protein S5 OS=Staphylococcus aureus (strain MRSA252) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.556e-14
Identity = 52/144 (36.11%), Postives = 77/144 (53.47%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            + ++ V+    V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+A  + L
Sbjct:   10 EFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATIDGL 144          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_STAAN (30S ribosomal protein S5 OS=Staphylococcus aureus (strain N315) GN=rpsE PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.556e-14
Identity = 52/144 (36.11%), Postives = 77/144 (53.47%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            + ++ V+    V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+A  + L
Sbjct:   10 EFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATIDGL 144          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_STAAM (30S ribosomal protein S5 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rpsE PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.556e-14
Identity = 52/144 (36.11%), Postives = 77/144 (53.47%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            + ++ V+    V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+A  + L
Sbjct:   10 EFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATIDGL 144          
The following BLAST results are available for this feature:
BLAST of EY659785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
RS5_GEOLS9.124e-1535.2930S ribosomal protein S5 OS=Geobacter lovleyi (str... [more]
RS5_BACSK9.124e-1537.4130S ribosomal protein S5 OS=Bacillus clausii (stra... [more]
RS5_ANATD9.124e-1538.3630S ribosomal protein S5 OS=Anaerocellum thermophi... [more]
RS5_BACLD1.192e-1434.0330S ribosomal protein S5 OS=Bacillus licheniformis... [more]
RS5_STAAW1.556e-1436.1130S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAAT1.556e-1436.1130S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAAS1.556e-1436.1130S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAAR1.556e-1436.1130S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAAN1.556e-1436.1130S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAAM1.556e-1436.1130S ribosomal protein S5 OS=Staphylococcus aureus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-A08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659785 ID=EY659785; Name=EY659785; organism=Citrus sinensis; type=EST; length=944bp
CCATTGATGATCGTTTAAACGGNNCGGAATTTTTCAACAAGGGGGCGGGN
GNGNNTTTTTCCCAACACGAAGGGGAAAGGNTAGCTTCAAACCCTAAACA
CACAAGAACAAAACTTTGGCCCAAAAAAGAGTGGAGCGCGGTGCATTCGG
ACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTGGCC
GTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTCACG
AAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCAAAT
CTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCTTA
TCGGCCACAAATTGAAGGACGAGGTCATGAAGAGCATGCCGGTGCAGAAA
CAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGTCGG
TGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGGTTT
CCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATTCCG
GTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGTGCC
GTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTCCGG
CCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTTCAAAGAAGGTGCTG
CAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGACCAA
GACTCTTGGAAACTTTGTCAAGGCAAACTTTGAGTGTTTGTTGAAGACAT
ATGGCTTCCTTACACCTGATTTCTGGAGGGAGACTCGTTTGTGAAATCTC
CATACCAAGAGTACACAGATCTTTTGACGCCAAAGCCCATCAGCAAGGCA
GTCATCACAGAAGTTGATCAAGGTGAACCTTAAGCTACTAAAGG
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