EY659749

Overview
NameEY659749
Unique NameEY659749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659749 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.446e-38
Identity = 85/228 (37.28%), Postives = 131/228 (57.46%), Query Frame = 1
Query:  181 QHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLK-------EELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMGRELFCMGREHAPSII 843
            + + +L  + ++    L  LE Q   +    + LK       EE++ +Q     +G+ ++ + +N  +V       Y V            P+  VAL   S  L  +LP + D  + ++  ++ PD  Y  IGG+D Q +E++E +ELP+ H EL++ +GI  P+GVL+YGPPG GKT+LA+AVAHHT   FIRV GSE VQKY+GEG RM R++F + +E+AP+II
Sbjct:   35 EDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAII 262          
BLAST of EY659749 vs. ExPASy Swiss-Prot
Match: PRS6B_YEAST (26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae GN=RPT3 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.194e-38
Identity = 86/219 (39.27%), Postives = 130/219 (59.36%), Query Frame = 1
Query:  187 IHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMGRELFCMGREHAPSII 843
            + +L+ +    T   + ++ ++  L   ++  +EE++ +Q     +G+ ++ + +N  +V       YVV            PS  VAL   S  L  ILP   D  +++M   + PD TY  +GGLD Q +EI+E +ELP+   +L+E +GI  P+GVLLYGPPGTGKT+L +AVA+ T   FIRV+GSE V KY+GEG RM R++F + RE+APSII
Sbjct:   51 LKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQNTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSII 269          
BLAST of EY659749 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.194e-38
Identity = 85/228 (37.28%), Postives = 130/228 (57.02%), Query Frame = 1
Query:  181 QHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLK-------EELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMGRELFCMGREHAPSII 843
            + + +L  + ++    L  LE Q   +    + LK       EE++ +Q     +G+ ++ + +N  +V       Y V            P+  VAL   S  L  +LP   D  + ++  ++ PD  Y  IGG+D Q +E++E +ELP+ H EL++ +GI  P+GVL+YGPPG GKT+LA+AVAHHT   FIRV GSE VQKY+GEG RM R++F + +E+AP+II
Sbjct:   35 EDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVASTTGSNYYVRMVSTIDRELLKPNASVALHKHSNALVDVLPPAADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAII 262          
BLAST of EY659749 vs. ExPASy Swiss-Prot
Match: PSMR_SULTO (Proteasome-activating nucleotidase OS=Sulfolobus tokodaii GN=pan PE=3 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 7.116e-38
Identity = 90/227 (39.65%), Postives = 128/227 (56.39%), Query Frame = 1
Query:  163 LRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMGRELFCMGREHAPSII 843
            L  Y  +H +     VR     +  L  +  +L   +   K EL+ L  P      V+ ++   KV+V+       +V            P + VAL      +  +LP + D  V   +V + P+  Y  IGGL++QI EI+EVIELP+K+PELF+ +GI  PKGVLLYGPPGTGKTLLA+AVA  ++ TFI+V  SE  QK++GEG+R+ RE+F + R  APSI+
Sbjct:    5 LDSYRAKHYNSDDPIVRLLEEKIESLTKELEKLRQDLNWYKGELEKLLAPPYIEAIVLDILPDGKVIVRSSSGPNLIVNVSSNIDIKKLKPGSLVALTQRGSTIVEVLPEREDAYVKSFEVIEKPNVHYSDIGGLNEQINEIREVIELPLKNPELFKEIGIDPPKGVLLYGPPGTGKTLLAKAVATESNATFIQVVASEFAQKFVGEGARIVREVFELARRKAPSIV 231          
BLAST of EY659749 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 7.116e-38
Identity = 89/226 (39.38%), Postives = 131/226 (57.96%), Query Frame = 1
Query:  193 ELQLQVRQKT--HNLNRLEAQRNELNSRVRMLK-------EELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMGRELFCMGREHAPSII 843
            E+ L  R K     L  L+ Q   +    + LK       EE++ +Q     +G+ ++ + +N  +V       YVV            PS  VAL+  S  L  ILP + D  +++++ ++ PD +Y  +GGLD Q +E++E +ELP+   +L+  +GI  P+GVLLYGPPGTGKT+L +AVA+ T   FIRV GSE VQKY+GEG RM R++F M RE+AP+II
Sbjct:    6 EIDLYNRWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAII 231          
BLAST of EY659749 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 7.116e-38
Identity = 78/187 (41.71%), Postives = 120/187 (64.17%), Query Frame = 1
Query:  283 KEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMGRELFCMGREHAPSII 843
            K++L+ ++     +G + +++  +  +V       Y V            P   V L + +  +  +L    DP+V++MK++K P  +Y  IGGL+ QI+EIKE +ELP+ HPEL+E +GI  PKGV+LYG PGTGKTLLA+AVA+ T  TF+R+ GSEL+QKY+G+G R+ R++F +  E+APSI+
Sbjct:   93 KKQLEEIRGNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIV 279          
BLAST of EY659749 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.214e-37
Identity = 85/224 (37.95%), Postives = 132/224 (58.93%), Query Frame = 1
Query:  178 LQHIHELQLQVRQKTHNLNR--LEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMGRELFCMGREHAPSII 843
            L H+  ++  ++ +T NL +  L AQ            EE++ +Q     +G+ ++ + +N  +V       Y V            P   VAL   S  L  +LP + D  + +++ ++ PD +Y  IGGLD Q +E++E +ELP+ H EL++ +GI  P+GVL+YGPPG GKT+LA+AVA +T  +FIRV GSE VQKY+GEG RM R++F + +E++PSII
Sbjct:   47 LAHLQVMEDYIKLETRNLEKELLHAQ------------EEVKRIQSVPLVIGQFLEAVDQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGKTMLAKAVAANTAASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPSII 258          
BLAST of EY659749 vs. ExPASy Swiss-Prot
Match: PSMR2_HALSA (Proteasome-activating nucleotidase 2 OS=Halobacterium salinarium GN=pan2 PE=3 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 3.532e-37
Identity = 83/229 (36.24%), Postives = 138/229 (60.26%), Query Frame = 1
Query:  166 RQYYLQHIHELQLQVRQKTHNLNRL---EAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMGRELFCMGREHAPSII 843
            +Q  L+ + E    + ++    +RL    A+ N+   ++  L  E + L++   ++  V ++  +  V +K H   +  +            P +RVA+ N   V+   L  + D    +M+V+  PD  Y+ IGGLD Q++E++E +ELP+K P LFE++GI  P GVLL+GPPGTGKTL+A+AVA  TD +FI+++GSELV K+IGEG+++ R+LF + R+H P+++
Sbjct:   20 QQDKLEALEEQLSTLEEENEERDRLLDANAENNKYQQKLERLSHENKKLKQSPLFIATVQELTDEGAV-IKQHGNNQEALTEVTDELRATLEPGSRVAVNNSLSVVRQ-LDDEADVRARVMEVDDSPDVGYEDIGGLDDQLREVRETVELPMKDPGLFETVGINPPSGVLLHGPPGTGKTLMAKAVASQTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARDHEPAVV 246          
BLAST of EY659749 vs. ExPASy Swiss-Prot
Match: PRS4_ENCCU (26S protease regulatory subunit 4 homolog OS=Encephalitozoon cuniculi GN=RPT2 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.532e-37
Identity = 72/121 (59.50%), Postives = 98/121 (80.99%), Query Frame = 1
Query:  481 ILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMGRELFCMGREHAPSII 843
            +L  ++DP+VN+MK+EK P  TY  IGGL++QI+EIKE +ELP+ +PEL++ +GI  PKGV+LYG PGTGKTLLA+AVA+ T  TF+RV G+EL+Q+Y+GEG ++ RELF +   HAPSII
Sbjct:  146 VLEGEMDPMVNVMKLEKAPSETYADIGGLEEQIQEIKESVELPLTNPELYQEMGIKPPKGVILYGLPGTGKTLLAKAVANQTSATFLRVVGTELIQEYLGEGPKLVRELFRVADMHAPSII 266          
BLAST of EY659749 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.024e-37
Identity = 85/230 (36.96%), Postives = 131/230 (56.96%), Query Frame = 1
Query:  157 EGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXX-PSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMGRELFCMGREHAPSII 843
            E  ++  LQ+  +  ++ +     LN+      +L    +  ++ ++ +Q  G  +GEV++ + + + +VK     +YVV             P  RV L   +  +  ILP +VDP++  M  E     +Y  IGGL  QI+E++EV+ELP+  PELF  +GI  PKGVLLYGPPGTGKTLLARA+A + +  F++V  S +V KYIGE +R+ RE+F   R+H P +I
Sbjct:    5 ETKKEQALQNYRDRLIEHKNAELRLNKAHELIKKLKKDFQKTEDHIKTIQYIGEIIGEVLRSLDEERFIVKACNGPRYVVRCANYQDKAHLLVPGARVTLDLTTLTILKILPREVDPIIFNMTAESPGSVSYGEIGGLSNQIRELREVVELPLMIPELFIRVGIKAPKGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYARDHQPCVI 234          
The following BLAST results are available for this feature:
BLAST of EY659749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
PRS6B_BOVIN2.446e-3837.2826S protease regulatory subunit 6B OS=Bos taurus G... [more]
PRS6B_YEAST3.194e-3839.2726S protease regulatory subunit 6B homolog OS=Sacc... [more]
PRS6B_MOUSE3.194e-3837.2826S protease regulatory subunit 6B OS=Mus musculus... [more]
PSMR_SULTO7.116e-3839.65Proteasome-activating nucleotidase OS=Sulfolobus t... [more]
PRS6B_SCHPO7.116e-3839.3826S protease regulatory subunit 6B homolog OS=Schi... [more]
PRS4_YEAST7.116e-3841.7126S protease regulatory subunit 4 homolog OS=Sacch... [more]
PRS6B_CAEEL1.214e-3737.95Probable 26S protease regulatory subunit 6B OS=Cae... [more]
PSMR2_HALSA3.532e-3736.24Proteasome-activating nucleotidase 2 OS=Halobacter... [more]
PRS4_ENCCU3.532e-3759.5026S protease regulatory subunit 4 homolog OS=Encep... [more]
PRS10_DICDI6.024e-3736.9626S protease regulatory subunit S10B OS=Dictyostel... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-F08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659749 ID=EY659749; Name=EY659749; organism=Citrus sinensis; type=EST; length=894bp
CCACGCGTCCGAGACTTGATCCGAAAGACAATTAGATTCGAACAAATCGA
ACTCGTTCACTCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGC
CGGAATCGGCGGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAA
CAAGGAGAGGGATTGAGGCAATACTACCTCCAACACATTCACGAACTCCA
GCTCCAAGTCCGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGC
GTAACGAACTCAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTT
CTTCAAGAGCCTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAA
AAATAAGGTTCTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATA
TTGATAAAAGTATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCA
CTTCGTAATGACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGA
TCCCCTGGTCAACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATG
ACATGATTGGTGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATT
GAGCTTCCTATCAAACATCCCGAATTGTTCGAGTCTCTTGGAATAGCTCA
ACCCAAGGGTGTATTGCTATATGGACCACCTGGTACTGGCAAAACACTGT
TGGCTAGAGCTGTGGCTCATCATACTGATTGTACTTTCATCAGGGTTTCT
GGTTCTGAATTAGTCCAGAAATACATTGGAGAAGGCTCCAGAATGGGTAG
AGAACTTTTTTGTATGGGCAGGGAACATGCTCCGTCTATCATTTTATGGA
TGAAATGACAGTATCGGATCTGCCCGAATGGATCTGGCAGCGAA
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