EY659746
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: HNRDL_CHICK (Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus GN=HNRPDL PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.188e-11 Identity = 43/165 (26.06%), Postives = 76/165 (46.06%), Query Frame = 3 Query: 411 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMGE 905 D K+F+G L +D + L + G V + + T RSRGFGFV EK +E+ + +DG+L+ +A +A + EP +++VG L + ++++ F G++ N + D +T RGF T E + + + +I G+ Sbjct: 29 DGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL-KEHKLDGKLIDPKRA--------KALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGK 184
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: RBPB_ANASP (Putative RNA-binding protein rbpB OS=Anabaena sp. (strain PCC 7120) GN=rbpB PE=3 SV=3) HSP 1 Score: 70.4774 bits (171), Expect = 1.552e-11 Identity = 35/67 (52.24%), Postives = 42/67 (62.69%), Query Frame = 3 Query: 702 IYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMG 902 IYVGNL ++V L VF+E+G V ++ DRETGR RGFG M S+ E AI ALDG WMG Sbjct: 3 IYVGNLSYDVTEESLNAVFAEYGSVKRVQLPVDRETGRVRGFGFVEMGSDAEETAAIEALDGAEWMG 69
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.552e-11 Identity = 42/144 (29.17%), Postives = 75/144 (52.08%), Query Frame = 3 Query: 420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSR 821 +++ NL ++D ++ +FEK G + A + ++E +SRGFGFV ST E A+ AVE + +I + L V +A + + E + E G +YV NL ++D+ +L ++F +G + +A+V D R + Sbjct: 237 VYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRDTNVERDQ 379
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.552e-11 Identity = 50/161 (31.06%), Postives = 77/161 (47.83%), Query Frame = 3 Query: 414 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRI 893 A L+VG L V L +F G+V V + T+ S G+ +V E KA+E + I G+ + + +R P + + G IY+ NL +DN L + FS G +++ +V D E G SRGFG +E++ DAI A+DG + Sbjct: 38 ASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWS-------QRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATD-ENGVSRGFGFVHFENESDARDAIEAVDGML 190 HSP 2 Score: 68.5514 bits (166), Expect = 5.897e-11 Identity = 48/172 (27.91%), Postives = 81/172 (47.09%), Query Frame = 3 Query: 420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMGE 905 ++V N+ + E+ LF K G + A V+ + RGFGFV A KAV+ + + G+ L V +A + + + + E G ++V NL +D+ +L++ F+ G + +A+V D ETG SRGFG ++ E AI + +I G+ Sbjct: 221 VYVKNIDQETSQEEFEELFGKYGKITSA-VLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRD-ETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGK 390
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 2.027e-11 Identity = 40/144 (27.78%), Postives = 77/144 (53.47%), Query Frame = 3 Query: 420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSR 821 +++ NL ++ E+ +FEK G + A + ++E +SRGFGFV ST + A+ AV+ + ++ G+ L V +A + + E + E G +YV NL ++D+ +L ++F+ +G + +A+V D R++ Sbjct: 231 VYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQE-GKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTITSAKVMRDTNIERTQ 373
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 2.027e-11 Identity = 44/144 (30.56%), Postives = 75/144 (52.08%), Query Frame = 3 Query: 420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSR 821 +++ N+ DV E+ LFEK G + A + ++E +SRGFGFV ST E A+ AV+ + +I + L V +A + + E + E G +YV NL +VD+ +L ++F +G + +A+V D R++ Sbjct: 232 VYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDTNIERTQ 374
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 2.027e-11 Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = 3 Query: 696 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGR 890 +R +VG L W +N LEQ F+ G+V++++V DRETGRSRGFG T +SE + DAI ++G+ Sbjct: 8 YRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGK 72
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: RBPA_ANASP (Putative RNA-binding protein rbpA OS=Anabaena sp. (strain PCC 7120) GN=rbpA PE=3 SV=3) HSP 1 Score: 69.707 bits (169), Expect = 2.647e-11 Identity = 36/67 (53.73%), Postives = 42/67 (62.69%), Query Frame = 3 Query: 702 IYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMG 902 IYVGNL +EV L VF+E+G V ++ DRETG+ RGFG M SE E AI ALDG WMG Sbjct: 3 IYVGNLSYEVTQDTLSAVFAEYGTVKRVQLPTDRETGQPRGFGFVEMGSEAEEAAAIEALDGAEWMG 69
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.647e-11 Identity = 43/140 (30.71%), Postives = 74/140 (52.86%), Query Frame = 3 Query: 420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRET 809 +++ N+ +V E+ +FEK G + A + ++E +SRGFGFV ST + A+ AV+ + +I G+ L V +A + + E + E G +YV NL +VD+ +L ++FS G + +A+V D T Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVT 373
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.647e-11 Identity = 48/165 (29.09%), Postives = 81/165 (49.09%), Query Frame = 3 Query: 414 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMGE 905 A L+VG+L V L +F G V V + T S G+ +V + + A+ A+E + I G+L + +R P + + G I++ NL ++DN L FS G +++++V D ETG+S+GFG + ++AI AL+G + G+ Sbjct: 35 ASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRI-------MWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATD-ETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQ 191 The following BLAST results are available for this feature:
BLAST of EY659746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 151
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Sequences
The
following sequences are available for this feature:
EST sequence >EY659746 ID=EY659746; Name=EY659746; organism=Citrus sinensis; type=EST; length=919bpback to top |