EY659746

Overview
NameEY659746
Unique NameEY659746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: HNRDL_CHICK (Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus GN=HNRPDL PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.188e-11
Identity = 43/165 (26.06%), Postives = 76/165 (46.06%), Query Frame = 3
Query:  411 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMGE 905
            D K+F+G L +D   + L     + G V    +  +  T RSRGFGFV        EK +E+   + +DG+L+   +A        +A +  EP  +++VG L  +    ++++ F   G++ N  +  D +T   RGF   T   E  +   + +   +I  G+
Sbjct:   29 DGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL-KEHKLDGKLIDPKRA--------KALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGK 184          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: RBPB_ANASP (Putative RNA-binding protein rbpB OS=Anabaena sp. (strain PCC 7120) GN=rbpB PE=3 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.552e-11
Identity = 35/67 (52.24%), Postives = 42/67 (62.69%), Query Frame = 3
Query:  702 IYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMG 902
            IYVGNL ++V    L  VF+E+G V   ++  DRETGR RGFG   M S+ E   AI ALDG  WMG
Sbjct:    3 IYVGNLSYDVTEESLNAVFAEYGSVKRVQLPVDRETGRVRGFGFVEMGSDAEETAAIEALDGAEWMG 69          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.552e-11
Identity = 42/144 (29.17%), Postives = 75/144 (52.08%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSR 821
            +++ NL  ++D ++   +FEK G +  A +  ++E  +SRGFGFV  ST E A+ AVE  +  +I  + L V +A  +  + E   +  E           G  +YV NL  ++D+ +L ++F  +G + +A+V  D    R +
Sbjct:  237 VYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRDTNVERDQ 379          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.552e-11
Identity = 50/161 (31.06%), Postives = 77/161 (47.83%), Query Frame = 3
Query:  414 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRI 893
            A L+VG L   V    L  +F   G+V    V  +  T+ S G+ +V     E   KA+E  +   I G+   +  +       +R P + + G   IY+ NL   +DN  L + FS  G +++ +V  D E G SRGFG     +E++  DAI A+DG +
Sbjct:   38 ASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWS-------QRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATD-ENGVSRGFGFVHFENESDARDAIEAVDGML 190          

HSP 2 Score: 68.5514 bits (166), Expect = 5.897e-11
Identity = 48/172 (27.91%), Postives = 81/172 (47.09%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMGE 905
            ++V N+  +   E+   LF K G +  A V+      + RGFGFV       A KAV+  +  +  G+ L V +A  +  + +   +  E           G  ++V NL   +D+ +L++ F+  G + +A+V  D ETG SRGFG    ++  E   AI   + +I  G+
Sbjct:  221 VYVKNIDQETSQEEFEELFGKYGKITSA-VLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRD-ETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGK 390          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.027e-11
Identity = 40/144 (27.78%), Postives = 77/144 (53.47%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSR 821
            +++ NL  ++  E+   +FEK G +  A +  ++E  +SRGFGFV  ST + A+ AV+  +  ++ G+ L V +A  +  + E   +  E           G  +YV NL  ++D+ +L ++F+ +G + +A+V  D    R++
Sbjct:  231 VYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQE-GKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTITSAKVMRDTNIERTQ 373          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.027e-11
Identity = 44/144 (30.56%), Postives = 75/144 (52.08%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSR 821
            +++ N+  DV  E+   LFEK G +  A +  ++E  +SRGFGFV  ST E A+ AV+  +  +I  + L V +A  +  + E   +  E           G  +YV NL  +VD+ +L ++F  +G + +A+V  D    R++
Sbjct:  232 VYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDTNIERTQ 374          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.027e-11
Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = 3
Query:  696 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGR 890
            +R +VG L W  +N  LEQ F+  G+V++++V  DRETGRSRGFG  T +SE  + DAI  ++G+
Sbjct:    8 YRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGK 72          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: RBPA_ANASP (Putative RNA-binding protein rbpA OS=Anabaena sp. (strain PCC 7120) GN=rbpA PE=3 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.647e-11
Identity = 36/67 (53.73%), Postives = 42/67 (62.69%), Query Frame = 3
Query:  702 IYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMG 902
            IYVGNL +EV    L  VF+E+G V   ++  DRETG+ RGFG   M SE E   AI ALDG  WMG
Sbjct:    3 IYVGNLSYEVTQDTLSAVFAEYGTVKRVQLPTDRETGQPRGFGFVEMGSEAEEAAAIEALDGAEWMG 69          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.647e-11
Identity = 43/140 (30.71%), Postives = 74/140 (52.86%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRET 809
            +++ N+  +V  E+   +FEK G +  A +  ++E  +SRGFGFV  ST + A+ AV+  +  +I G+ L V +A  +  + E   +  E           G  +YV NL  +VD+ +L ++FS  G + +A+V  D  T
Sbjct:  235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVT 373          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.647e-11
Identity = 48/165 (29.09%), Postives = 81/165 (49.09%), Query Frame = 3
Query:  414 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMGE 905
            A L+VG+L   V    L  +F   G V    V  +  T  S G+ +V  +  + A+ A+E  +   I G+L  +          +R P + + G   I++ NL  ++DN  L   FS  G +++++V  D ETG+S+GFG      +   ++AI AL+G +  G+
Sbjct:   35 ASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRI-------MWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATD-ETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQ 191          
The following BLAST results are available for this feature:
BLAST of EY659746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
HNRDL_CHICK1.188e-1126.06Heterogeneous nuclear ribonucleoprotein D-like OS=... [more]
RBPB_ANASP1.552e-1152.24Putative RNA-binding protein rbpB OS=Anabaena sp. ... [more]
PABP_ASPNC1.552e-1129.17Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASHGO1.552e-1131.06Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPTN2.027e-1127.78Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPOR2.027e-1130.56Polyadenylate-binding protein, cytoplasmic and nuc... [more]
GRP2_SORBI2.027e-1147.69Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
RBPA_ANASP2.647e-1153.73Putative RNA-binding protein rbpA OS=Anabaena sp. ... [more]
PABP_NEOFI2.647e-1130.71Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CANGA2.647e-1129.09Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-F05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659746 ID=EY659746; Name=EY659746; organism=Citrus sinensis; type=EST; length=919bp
CCACGCGTCCGTCTATCTTCGCCCGAAACCCATATTTCTCTATCCACCCC
AGACCCAGACCTATCAAGCTTCACCTTTCCGACTCCTCCTTATCTTCGAA
AGGTTTCTCCTTTAAGCTCAAAAAAACTATCCATTTCTCTTCATTCACGA
CTTTCGTTGCCCAAACGTCGGACTGGGCCGACCAAGAAGAAGACAAAGAC
AACACCACCATCACTCTTGAACAAGAACAAGAAGAGAATGGGGAAGAAGA
ACCGAATTGGGAAAATCAAGGAGCCGATGAAACTGAAGGGAATTTATCTG
ATTGGGGGGAACCCGAAGGCGAAGACACAGTTGTTGAGGCTGGTGAAAGG
CAGGAGGAGAGTGGTGAAGAGGGCGTTTTTCAGGAAGAGGAATTTGTGGA
ACCACCTGAGGATGCTAAGTTGTTTGTTGGGAACTTGCCCTATGATGTTG
ATAGTGAAAAGCTTGCTATGCTTTTTGAGAAGGCTGGAACTGTCGAGATT
GCCGAGGTTATTTACAACAGGGAGACTGACCGGAGTCGTGGCTTTGGGTT
CGTGACAATGAGTACTGTTGAGGAAGCTGAAAAGGCTGTGGAAATGTTTC
ACAGATATGACATAGATGGAAGGCTTTTGACGGTAAATAAAGCTGCTCCA
AGAGGAACACAGCCTGAACGCGCCCCTCGTGTGGTTGAGCCTGGTTTTAG
AATCTATGTGGGCAACCTGCCATGGGAAGTGGATAATGCTCGTCTAGAGC
AAGTTTTTAGTGAGCATGGTAAGGTGGTGAATGCCCGGGTTGNTTATGAC
AGGGAGACTGGACGTTCACGAGGNTTTGGGCTTGNTACAATGGCTAGTGA
GACTGAATTGAATGACGCAATTGCTGCTCTTGACGGACGAATCTGGATGG
GAGAGCATCAAAGAAATTT
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