EY659711

Overview
NameEY659711
Unique NameEY659711
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659711 vs. ExPASy Swiss-Prot
Match: RL2_THEAC (50S ribosomal protein L2P OS=Thermoplasma acidophilum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.394e-36
Identity = 94/243 (38.68%), Postives = 131/243 (53.91%), Query Frame = 3
Query:   15 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTGRRDAPPDQKVGLIAAXR 740
            MG+ I  QR+G GS V++S +H      + + +D G        V+ +IIH PGR APL  +          +K   IA  G + GQ +  G   ++  G    + +IP+G+ V N+E   GD G   R++G +A+++SH        +KLPSG  +     CRA +G VA  G  + P+LKAG   H  R K      VRGVAMN V HPHGGGNHQH+G  ST  R+APP +KVG ++  R
Sbjct:    1 MGKHIIPQRRGHGSLVYRSPSHRHI--TEVKHVDQGTY------VIKDIIHAPGRNAPLLELMGSDG-----KKAYQIAFTGAFVGQNIVAGNVDSVSPGTTTVLANIPDGSYVYNIESSPGDGGEFCRSAGTFALVVSHGQH---VTLKLPSGRMRDFDPRCRATLGVVAASGIKDPPILKAGTHVHYLRSKAKRPYTVRGVAMNAVNHPHGGGNHQHVGRPSTVGRNAPPGRKVGRLSPKR 227          
BLAST of EY659711 vs. ExPASy Swiss-Prot
Match: RL2_PICTO (50S ribosomal protein L2P OS=Picrophilus torridus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.377e-36
Identity = 94/243 (38.68%), Postives = 130/243 (53.50%), Query Frame = 3
Query:   15 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTGRRDAPPDQKVGLIAAXR 740
            MG+ I AQR+G GS V++S +H   G  ++       R+G  K  + +II  PGR  P+  +          +K   IA  G Y  Q ++ G   +  +G+V  + +IP+G+ V N+E   GD G   RA+G  A++ISH        +KLPSG  K     CRA +G +AG G  + P+LKAG      + K      VRGVAMN V HPHGGGNHQH+G  ST  R  PP +KVG ++  R
Sbjct:    1 MGKHIVAQRRGHGSLVYRSPSHRHLGDIKY------PRDGTYK--IEDIIQAPGRNTPVLLIR-----NEKNEKNYMIAFNGAYVNQEIHVGDIDSPAIGDVTYLANIPDGSYVYNIESIPGDGGKFCRAAGTAALVISHGA---YVSLKLPSGVNKEFHPRCRATVGFIAGSGARDIPILKAGTHIKYLQSKAKRPYTVRGVAMNAVNHPHGGGNHQHVGRPSTVGRGTPPGRKVGRLSPKR 227          
BLAST of EY659711 vs. ExPASy Swiss-Prot
Match: RL2_BORRA (50S ribosomal protein L2 OS=Borrelia recurrentis (strain A1) GN=rplB PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.824e-28
Identity = 85/233 (36.48%), Postives = 125/233 (53.65%), Query Frame = 3
Query:   18 GRVIRAQRKGAG--SVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTGRRDAPP 707
            G+V RA R  +G  SV +    H++   ++R +DF  R+ + +   VA I +DP R   +A + +R        K   IA +G+  G  +  G  A + +GN LP+ +IP G +V N+E ++G  G L R +G YA+II+   D D   VKLPSG  ++I   C A +G+V         + KAG +  ++  +R   PKVRGVAMNP++HPHGGG     G  S GR    P
Sbjct:   37 GKVSRAGRDSSGRISVRRRGGGHKR---RYREIDFARRDKFGIPARVAAIEYDPNRSPNIALLVYRDG-----DKRYIIAPKGVKVGDILESGPNAPIKIGNALPLENIPVGKMVHNIELNIGKGGQLVRGAGGYAMIIA--SDGDYVTVKLPSGEMRMIFKKCIATLGEVGNEDYMNVSIGKAGKS--RWLGRR---PKVRGVAMNPIDHPHGGGE----GKTSGGRHPVSP 250          
BLAST of EY659711 vs. ExPASy Swiss-Prot
Match: RL2_BORDL (50S ribosomal protein L2 OS=Borrelia duttonii (strain Ly) GN=rplB PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.824e-28
Identity = 85/233 (36.48%), Postives = 125/233 (53.65%), Query Frame = 3
Query:   18 GRVIRAQRKGAG--SVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTGRRDAPP 707
            G+V RA R  +G  SV +    H++   ++R +DF  R+ + +   VA I +DP R   +A + +R        K   IA +G+  G  +  G  A + +GN LP+ +IP G +V N+E ++G  G L R +G YA+II+   D D   VKLPSG  ++I   C A +G+V         + KAG +  ++  +R   PKVRGVAMNP++HPHGGG     G  S GR    P
Sbjct:   37 GKVSRAGRDSSGRISVRRRGGGHKR---RYREIDFARRDKFGIPARVAAIEYDPNRSPNIALLVYRDG-----DKRYIIAPKGVKVGDILESGPNAPIKIGNALPLENIPVGKMVHNIELNIGKGGQLVRGAGGYAMIIA--SDGDYVTVKLPSGEMRMIFKKCIATLGEVGNEDYMNVSIGKAGKS--RWLGRR---PKVRGVAMNPIDHPHGGGE----GKTSGGRHPVSP 250          
BLAST of EY659711 vs. ExPASy Swiss-Prot
Match: RL2_DESAP (50S ribosomal protein L2 OS=Desulforudis audaxviator (strain MP104C) GN=rplB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.665e-27
Identity = 85/245 (34.69%), Postives = 120/245 (48.98%), Query Frame = 3
Query:    3 TRPEMGRVIRAQRKGAGSVFKSHT--HHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTGRRDAPPDQKVGL 725
            T PE   ++   RK AG  F+      HR G  +  +R +DF      + G VA I +DP R A +A V +        +K   +A  G+  GQ +  G +A + VGN LP+R+IP G ++ N+E + G    + R++G  A +++   + D   V+LPSG  ++ P  CRA IGQV         + KAG A           P VRGV MNPV+HPHGGG     G +  GR    P  K  L
Sbjct:   27 TEPEKS-LVEPLRKKAGRNFQGRVTVRHRGGGHKRLYRVIDFKRNKDGVPGKVATIEYDPNRSANIALVNYADG-----EKRYIVAPAGLKVGQEIMSGPQADIKVGNALPLRNIPPGVLIHNIELYPGHGARVVRSAGGSAQLMA--KEGDYAHVRLPSGEVRLFPLDCRATIGQVGNVEHENIVIGKAGRARW-----LGIRPTVRGVVMNPVDHPHGGGE----GRSPIGRPPVTPWGKPAL 254          
BLAST of EY659711 vs. ExPASy Swiss-Prot
Match: RL2_GEOLS (50S ribosomal protein L2 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rplB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.708e-26
Identity = 82/238 (34.45%), Postives = 122/238 (51.26%), Query Frame = 3
Query:    3 TRPEMGRVIRAQRKGAGSVFKSHTHHRKGPA---QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTGRRDAPP 707
            T PE   +++ ++ G  + F   T   +G     ++R +DF      +   VA I +DP R A +A + +        +K   +A   +  G  V  G +A +  GN LP+RSIP G ++ N+E  +G    LAR++G +A ++S   +   ++VKLPSG  +++   C A IGQV         L KAG +  ++  KR   PKVRGVAMNPV+HPHGGG     G  S GR    P
Sbjct:   27 TTPEKSLLVKIKKTGGRNHFGRVTARHQGGGHKQKYRMIDFRRDKRGIPAKVATIEYDPNRSARIALLHYTDG-----EKRYILAPLDLKVGDTVLSGPEADIKPGNSLPLRSIPLGTIIHNIELKIGKGAQLARSAGTFAQLMS--KEGKYSQVKLPSGEVRLVLQDCYATIGQVGNIDHENVCLGKAGRS--RWLGKR---PKVRGVAMNPVDHPHGGGE----GRTSGGRHPVTP 248          
BLAST of EY659711 vs. ExPASy Swiss-Prot
Match: RL2_THEPX (50S ribosomal protein L2 OS=Thermoanaerobacter sp. (strain X514) GN=rplB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.230e-26
Identity = 81/232 (34.91%), Postives = 120/232 (51.72%), Query Frame = 3
Query:    6 RPEMGRVIRAQRKGAGSVFKSHT-HHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQ-HIGH 677
            +PE   V+   + G  +V+   T  HR G    ++R +DF      + G VA I +DP R A +A + +        +K   IA  G+  G  +  G+   + VGN LP+R+IP G ++ N+E   G  G L RA+G  A +++   + D  +V++PSG  ++I + CRA IGQV+        + KAG         R+ W    P VRG AMNPV+HPHGGG  +  IGH
Sbjct:   28 KPEKSLVVTLTKTGGRNVYGRITVRHRGGGHKRKYRIIDFKRDKDGIPGKVAAIEYDPNRTAYIALIHYLDG-----EKRYIIAPYGLKVGDIIESGENVDIKVGNALPLRNIPVGTIIHNIELIPGKGGQLVRAAGTAAQLMA--KEGDYVQVRMPSGEIRLIKADCRATIGQVSNLDHENVKIGKAG---------RSRWLGIRPTVRGSAMNPVDHPHGGGEGKAPIGH 243          
BLAST of EY659711 vs. ExPASy Swiss-Prot
Match: RL2_THEP3 (50S ribosomal protein L2 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.230e-26
Identity = 81/232 (34.91%), Postives = 120/232 (51.72%), Query Frame = 3
Query:    6 RPEMGRVIRAQRKGAGSVFKSHT-HHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQ-HIGH 677
            +PE   V+   + G  +V+   T  HR G    ++R +DF      + G VA I +DP R A +A + +        +K   IA  G+  G  +  G+   + VGN LP+R+IP G ++ N+E   G  G L RA+G  A +++   + D  +V++PSG  ++I + CRA IGQV+        + KAG         R+ W    P VRG AMNPV+HPHGGG  +  IGH
Sbjct:   28 KPEKSLVVTLTKTGGRNVYGRITVRHRGGGHKRKYRIIDFKRDKDGIPGKVAAIEYDPNRTAYIALIHYLDG-----EKRYIIAPYGLKVGDIIESGENVDIKVGNALPLRNIPVGTIIHNIELIPGKGGQLVRAAGTAAQLMA--KEGDYVQVRMPSGEIRLIKADCRATIGQVSNLDHENVKIGKAG---------RSRWLGIRPTVRGSAMNPVDHPHGGGEGKAPIGH 243          
BLAST of EY659711 vs. ExPASy Swiss-Prot
Match: RL2_EDWI9 (50S ribosomal protein L2 OS=Edwardsiella ictaluri (strain 93-146) GN=rplB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.230e-26
Identity = 71/193 (36.79%), Postives = 103/193 (53.37%), Query Frame = 3
Query:   96 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 674
            Q+R +DF      +  VV  + +DP R A +A V ++       ++   +AA+G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + IP+ CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:   61 QYRLIDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAAKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGAYVTLRLRSGEMRKIPADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of EY659711 vs. ExPASy Swiss-Prot
Match: RL2_BORGA (50S ribosomal protein L2 OS=Borrelia garinii GN=rplB PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.913e-26
Identity = 83/235 (35.32%), Postives = 123/235 (52.34%), Query Frame = 3
Query:    6 RPEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTGRRDAPP 707
            R   GR I  +R+G G       H RK    +R +DF  R+ + +   VA I +DP R A +A + ++       +K   I+ +G+  G  +  G  A + +GN LP+ +IP G  + N+E +VG  G L R++G YA+I++   D +   VKL SG  ++I   C A IG++         + KAG +  ++  +R   PKVRGVAMNPV+HPHGGG     G  S GR    P
Sbjct:   44 RDSSGR-ISIRRRGGG-------HKRK----YRLIDFNRRDKFSIPARVASIEYDPNRSANIALLVYKDG-----EKRYIISPKGIKVGDVLESGPNAPIKIGNALPLENIPIGRTIHNIELNVGKGGQLVRSAGGYAMILA--SDGNYVTVKLSSGEMRLIFKKCIATIGEIGNEDYANVSIGKAGKS--RWLGRR---PKVRGVAMNPVDHPHGGGE----GKTSGGRHPVSP 250          
The following BLAST results are available for this feature:
BLAST of EY659711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_THEAC1.394e-3638.6850S ribosomal protein L2P OS=Thermoplasma acidophi... [more]
RL2_PICTO2.377e-3638.6850S ribosomal protein L2P OS=Picrophilus torridus ... [more]
RL2_BORRA1.824e-2836.4850S ribosomal protein L2 OS=Borrelia recurrentis (... [more]
RL2_BORDL1.824e-2836.4850S ribosomal protein L2 OS=Borrelia duttonii (str... [more]
RL2_DESAP7.665e-2734.6950S ribosomal protein L2 OS=Desulforudis audaxviat... [more]
RL2_GEOLS1.708e-2634.4550S ribosomal protein L2 OS=Geobacter lovleyi (str... [more]
RL2_THEPX2.230e-2634.9150S ribosomal protein L2 OS=Thermoanaerobacter sp.... [more]
RL2_THEP32.230e-2634.9150S ribosomal protein L2 OS=Thermoanaerobacter pse... [more]
RL2_EDWI92.230e-2636.7950S ribosomal protein L2 OS=Edwardsiella ictaluri ... [more]
RL2_BORGA2.913e-2635.3250S ribosomal protein L2 OS=Borrelia garinii GN=rp... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-C04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659711 ID=EY659711; Name=EY659711; organism=Citrus sinensis; type=EST; length=918bp
CCACGCGTCCGGAAATGGGTCGTGTGATTCGCGCACAGCGTAAGGGTGCA
GGTTCGGTCTTCAAGTCCCACACCCACCACCGTAAGGGTCCGGCCCAGTT
CCGCAGCCTCGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCGTCG
CAGAGATTATTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTTACC
TTTCGTCACCCTTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGCCGC
CGAGGGTATGTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCACTC
TGATGGTTGGTAATGTGTTGCCCGTTAGATCTATCCCTGAAGGAGCTGTC
GTTTGCAACGTTGAGCATCATGTTGGTGATCGCGGTGTTCTCGCTAGAGC
TTCTGGTGATTATGCCGTTATCATCAGTCATAACCCCGATAATGACACCA
CCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGC
AGAGCTATGATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCT
TCTCAAAGCTGGTAATGCATACCACAAATTCAGAGTGAAGCGAAACTGCT
GGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGTGGAGCATCCTCATGGA
GGAGGTAACCACCAGCACATTGGTCATGCTAGCACTGGTAGGCGTGATGC
TCCCCCTGACCAGAAGGTTGGTCTTATTGCAGCCAGNAGGACTGGTCGGC
TCAAAGGACAGCTGCTGCCACTGCAGCCAGGNNCGACAGCTTNAATCCNT
TGTGGTACACAATCGTCTCTCTATCGGATCTGTCATTTACTTTCCTGCTG
CATCATACTTGGAAAATTTGTCAGATTTGATCTCGGGATGATCTGATGGT
AAATTGNTGGCTTAAGTT
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