EY659702

Overview
NameEY659702
Unique NameEY659702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_XANCB (Serine hydroxymethyltransferase OS=Xanthomonas campestris pv. campestris (strain B100) GN=glyA PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.667e-55
Identity = 116/260 (44.62%), Postives = 160/260 (61.54%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF----FDAAVKLAVKIKSENSGTKLKNSWP 770
            +PK+++AG SAY++  D+ R R + +   A +  DMAH++GLVAAGV PSP ++A VVT+TTHK+LRGPRG +I   KG  E          D  +K+   VFPG+QGGP  H I   AVA K+A  PE+K YQ+QV+ N    A TL+  GY++VSGGTENHL+LV++  + + G   E  L   HI  NKN+VP D  S  V  G+R+GTPA+T+RG+ E+D   +A +     DA    AV  K  ++ T     +P
Sbjct:  166 KPKMVIAGFSAYSQKIDWARFRAIADSVGAYLFVDMAHVAGLVAAGVYPSPMDHAHVVTSTTHKTLRGPRGGIIL-AKGAGE----------DLVKKLQSIVFPGIQGGPLMHVIAAKAVAFKEALEPEFKTYQQQVVKNAQAMANTLIARGYKIVSGGTENHLMLVDMIGRDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTSGLRLGTPAITTRGYQEQDCVDLANWIADVLDAPADDAVLAKVRDAVTAQCKKYP 414          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_XANC8 (Serine hydroxymethyltransferase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=glyA PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.667e-55
Identity = 116/260 (44.62%), Postives = 160/260 (61.54%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF----FDAAVKLAVKIKSENSGTKLKNSWP 770
            +PK+++AG SAY++  D+ R R + +   A +  DMAH++GLVAAGV PSP ++A VVT+TTHK+LRGPRG +I   KG  E          D  +K+   VFPG+QGGP  H I   AVA K+A  PE+K YQ+QV+ N    A TL+  GY++VSGGTENHL+LV++  + + G   E  L   HI  NKN+VP D  S  V  G+R+GTPA+T+RG+ E+D   +A +     DA    AV  K  ++ T     +P
Sbjct:  166 KPKMVIAGFSAYSQKIDWARFRAIADSVGAYLFVDMAHVAGLVAAGVYPSPMDHAHVVTSTTHKTLRGPRGGIIL-AKGAGE----------DLVKKLQSIVFPGIQGGPLMHVIAAKAVAFKEALEPEFKTYQQQVVKNAQAMANTLIARGYKIVSGGTENHLMLVDMIGRDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTSGLRLGTPAITTRGYQEQDCVDLANWIADVLDAPADDAVLAKVRDAVTAQCKKYP 414          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_XANC5 (Serine hydroxymethyltransferase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=glyA PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.667e-55
Identity = 116/260 (44.62%), Postives = 159/260 (61.15%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF----FDAAVKLAVKIKSENSGTKLKNSWP 770
            +PK++VAG SAY++  D+ R R + +   A +  DMAHI+GLVAAGV PSP E+A VVT+TTHK+LRGPRG +I  +   +E+ K           K+   VFPG+QGGP  H I   AVA K+A  P +K YQ+QV+ N    A TL+  GY++VSGGTENHL+LV++  + + G   E  L   HI  NKN+VP D  S  V  G+R+GTPA+T+RG+ E+D   +A +     DA    AV  K  ++ T     +P
Sbjct:  166 KPKMVVAGFSAYSQKIDWARFRAIADSVGAYLFVDMAHIAGLVAAGVYPSPMEHAHVVTSTTHKTLRGPRGGIIVAKGASEELQK-----------KLQSIVFPGIQGGPLMHVIAAKAVAFKEALEPAFKTYQQQVVKNAQAMANTLIARGYKIVSGGTENHLMLVDMIGRDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTSGLRLGTPAITTRGYQEQDSIDLANWIADVLDAPTDEAVLAKVRDAVTAQCKRYP 414          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_XANAC (Serine hydroxymethyltransferase OS=Xanthomonas axonopodis pv. citri GN=glyA PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.667e-55
Identity = 116/260 (44.62%), Postives = 159/260 (61.15%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF----FDAAVKLAVKIKSENSGTKLKNSWP 770
            +PK++VAG SAY++  D+ R R + +   A +  DMAHI+GLVAAGV PSP E+A VVT+TTHK+LRGPRG +I  +   +E+ K           K+   VFPG+QGGP  H I   AVA K+A  P +K YQ+QV+ N    A TL+  GY++VSGGTENHL+LV++  + + G   E  L   HI  NKN+VP D  S  V  G+R+GTPA+T+RG+ E+D   +A +     DA    AV  K  ++ T     +P
Sbjct:  166 KPKMVVAGFSAYSQKIDWARFRAIADSVGAYLFVDMAHIAGLVAAGVYPSPMEHAHVVTSTTHKTLRGPRGGIIVAKGASEELQK-----------KLQSIVFPGIQGGPLMHVIAAKAVAFKEALEPAFKTYQQQVVKNAQAMANTLIARGYKIVSGGTENHLMLVDMIGRDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTSGLRLGTPAITTRGYQEQDSIDLANWIADVLDAPTDEAVLAKVRDAVTAQCKRYP 414          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_THESQ (Serine hydroxymethyltransferase OS=Thermotoga sp. (strain RQ2) GN=glyA PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.667e-55
Identity = 112/250 (44.80%), Postives = 154/250 (61.60%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGTK 752
            +PK+IVAG SAYAR+ D++R R++ ++  A ++ DMAH +GLVAAG+ P+P EYA VVT+TTHK+LRGPRG +I                  D  + +++ +FPG+QGGP  H I   AV  K+A T E+K YQ QV+ N  K A+   + GY +VSGGT+ HL LV+L  K I G   EK LE+  I  NKNT+P +  S  V  GIR+GTPA+T+RG  EE+  ++A   D  +     +  EN   K
Sbjct:  164 KPKIIVAGGSAYARIIDFKRFREIADEVGAYLMVDMAHFAGLVAAGIHPNPLEYAHVVTSTTHKTLRGPRGGLILTNDP-------------DIAKAVDKTIFPGIQGGPLMHVIAAKAVCFKEAMTEEFKEYQNQVVKNAKKMAEEFQKRGYRIVSGGTDTHLFLVDLTPKDITGKAAEKALESCGITVNKNTIPNEKRSPFVASGIRIGTPAVTTRGMKEEEMEEIAEMIDLVLS---NVTDENGTVK 397          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_SYNWW (Serine hydroxymethyltransferase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=glyA PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.667e-55
Identity = 107/229 (46.72%), Postives = 157/229 (68.56%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            RP++IVAGASAY R+ D+++ R++ ++  A++  DMAHI+GLVAAG+ PSP  YAD V++TTHK+LRGPRG  I  R+              ++  KI++AVFPG+QGGP  H I   AV  K+A TPE+KAYQ+ +++N +  A+ L+E G  +VSGGT+NHL+LV+++ K ++G   E +LE+++I  NKN +P D     V  GIR+GTPA+TSR    +D  ++A
Sbjct:  167 RPQMIVAGASAYPRILDFKKFREIADEAGALLFVDMAHIAGLVAAGLHPSPVPYADFVSSTTHKTLRGPRGGFILCRQ--------------EWANKIDKAVFPGIQGGPLMHVIAAKAVCFKEALTPEFKAYQQDIVNNAAILAKALMEQGLRVVSGGTDNHLMLVDVRPKGLNGRDAEAILESINITVNKNAIPFDPEKPTVTSGIRVGTPAVTSRALKGDDMRELA 381          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_STAES (Serine hydroxymethyltransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=glyA PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.667e-55
Identity = 116/264 (43.94%), Postives = 168/264 (63.64%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNK-RIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGTKLKNSWPQHSPLTS 791
            +PKLIVAGASAY+R  D+++ +++ ++  A ++ DMAHI+GLVAAG+ P+P EYAD VTTTTHK+LRGPRG MI  ++              +Y++ I++ +FPG+QGGP  H I   AVA  +A   ++K YQ QV+ N    AQTL+E G+ +VSGGT+NHLV V++K    + G   E+ L+ V I  NKNT+P D     V  G+R+GTPA T+RGF E  F +VA        +++ + + ++ TKL  +  +   LTS
Sbjct:  163 QPKLIVAGASAYSRTIDFKKFKEIADEVGAKLMVDMAHIAGLVAAGLHPNPVEYADFVTTTTHKTLRGPRGGMILCKE--------------EYKKDIDKTIFPGIQGGPLEHVIAAKAVAFGEALNDDFKDYQNQVIKNAQALAQTLIEEGFRVVSGGTDNHLVAVDVKGSINMTGKLAEETLDKVGITCNKNTIPFDKEKPFVTSGVRLGTPAATTRGFDESAFVEVAKI------ISLALNNYDNDTKLNEAKERVHALTS 406          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_STAEQ (Serine hydroxymethyltransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=glyA PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.667e-55
Identity = 116/264 (43.94%), Postives = 168/264 (63.64%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNK-RIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGTKLKNSWPQHSPLTS 791
            +PKLIVAGASAY+R  D+++ +++ ++  A ++ DMAHI+GLVAAG+ P+P EYAD VTTTTHK+LRGPRG MI  ++              +Y++ I++ +FPG+QGGP  H I   AVA  +A   ++K YQ QV+ N    AQTL+E G+ +VSGGT+NHLV V++K    + G   E+ L+ V I  NKNT+P D     V  G+R+GTPA T+RGF E  F +VA        +++ + + ++ TKL  +  +   LTS
Sbjct:  163 QPKLIVAGASAYSRTIDFKKFKEIADEVGAKLMVDMAHIAGLVAAGLHPNPVEYADFVTTTTHKTLRGPRGGMILCKE--------------EYKKDIDKTIFPGIQGGPLEHVIAAKAVAFGEALNDDFKDYQNQVIKNAQALAQTLIEEGFRVVSGGTDNHLVAVDVKGSINMTGKLAEETLDKVGITCNKNTIPFDKEKPFVTSGVRLGTPAATTRGFDESAFVEVAKI------ISLALNNYDNDTKLNEAKERVHALTS 406          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_DESDG (Serine hydroxymethyltransferase OS=Desulfovibrio desulfuricans (strain G20) GN=glyA PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.667e-55
Identity = 114/229 (49.78%), Postives = 151/229 (65.94%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            RP +IVAGASAY+R+ D+ R R + ++  ++++ DMAHI+GLVAAG+ PSP   A   TTTTHK+LRGPRG MI   +              +  +K+N  +FPG+QGGP  H I   AVA  +A  PE+ AYQ+QV++N +K A TL + G+ELVSGGT+NHL+LV+L NK I G   +  L+   I ANKNTVP +  S  V  GIR+GTPALT+RG  E +  KVA
Sbjct:  163 RPAMIVAGASAYSRIIDFARFRAIADEVGSLLMVDMAHIAGLVAAGLHPSPVGTAHFTTTTTHKTLRGPRGGMILSDE--------------EAAKKLNSQIFPGIQGGPLMHVIAAKAVAFGEALRPEFGAYQKQVVANAAKLAATLTDAGFELVSGGTDNHLMLVDLTNKDITGKDAQHALDLAGITANKNTVPFETRSPFVTSGIRLGTPALTTRGMKEAEMVKVA 377          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA2_PSEPK (Serine hydroxymethyltransferase 2 OS=Pseudomonas putida (strain KT2440) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.667e-55
Identity = 109/229 (47.60%), Postives = 147/229 (64.19%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            +PK+IVAG SAY+++ D+ R R + +K  A +  DMAH++GLVAAGV P+P  +ADVVTTTTHK+LRGPRG +I  R               D E+K+N AVFPG QGGP  H I   A+  K+A  PE+KAYQ+QV+ N    A   +E G+++VSGGT+NHL L++L  + I G   +  L    I  NKN+VP D  S  V  G+R GTPA+T+RGF E +  ++A
Sbjct:  166 KPKMIVAGFSAYSQVLDFARFRAIADKVGAYLFVDMAHVAGLVAAGVYPNPVPFADVVTTTTHKTLRGPRGGLILARANA------------DIEKKLNSAVFPGAQGGPLEHVIAAKAICFKEALQPEFKAYQQQVVKNAQAMASVFIERGFDVVSGGTQNHLFLLSLIKQEISGKDADAALGKAFITVNKNSVPNDPRSPFVTSGLRFGTPAVTTRGFKEAECKELA 382          
The following BLAST results are available for this feature:
BLAST of EY659702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_XANCB1.667e-5544.62Serine hydroxymethyltransferase OS=Xanthomonas cam... [more]
GLYA_XANC81.667e-5544.62Serine hydroxymethyltransferase OS=Xanthomonas cam... [more]
GLYA_XANC51.667e-5544.62Serine hydroxymethyltransferase OS=Xanthomonas cam... [more]
GLYA_XANAC1.667e-5544.62Serine hydroxymethyltransferase OS=Xanthomonas axo... [more]
GLYA_THESQ1.667e-5544.80Serine hydroxymethyltransferase OS=Thermotoga sp. ... [more]
GLYA_SYNWW1.667e-5546.72Serine hydroxymethyltransferase OS=Syntrophomonas ... [more]
GLYA_STAES1.667e-5543.94Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_STAEQ1.667e-5543.94Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_DESDG1.667e-5549.78Serine hydroxymethyltransferase OS=Desulfovibrio d... [more]
GLYA2_PSEPK1.667e-5547.60Serine hydroxymethyltransferase 2 OS=Pseudomonas p... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-B07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659702 ID=EY659702; Name=EY659702; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGAAATTGATTGTTGCTGGTGCTAGTGCTTATGCACGATTG
TACGATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGCTATAAT
GTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTGTCATCC
CTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCACAAATCA
CTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGTGAAAGA
GATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATGAAGAAAAAATAA
ATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACACAACCACACAATT
ACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCCAGAGTATAAAGC
CTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAATTTGCACAGACTCTGC
TCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAGAACCATCTAGTG
TTGGTGAATTTGAAAAACAAGAGAATTGATGGTTCCAGAGTTGAAAAAGT
GTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTGTTCCTGGGGATG
TGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCTCTTACT
TCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGTAGCATATTTCTTTGA
TGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGAAAACTCAGGAACAA
AGTTGAAGAATTCGTGGCCACAACACAGTCCGCTTACTTCAATCCGAGAT
TGCGAACTTCGCCATGATGTGANGAGTATGCAAACAGTCCCCACATTGGG
TTTGAAAAGAAACCATGAGTACAGACTGAGAGAAAACGCACT
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