EY659702

Overview
NameEY659702
Unique NameEY659702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_GEOSM (Serine hydroxymethyltransferase OS=Geobacter sp. (strain M21) GN=glyA PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.178e-55
Identity = 109/231 (47.19%), Postives = 149/231 (64.50%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 695
            +PK+IV GASAY R+ D+E  R++ +K  A+++ DMAHI+GLVAAG+ PSP  YA+ VTTTTHK+LRGPRG MI  R+              ++ + +N  +FPG+QGGP  H I   AVA K+A TPE+K YQEQ++ N    A+ L + G++L SGGT+NHL+LV+L    + G   E+ L+   I  NKN +P D  S  +  GIR+GTPA TS G  E +  +VA F
Sbjct:  163 KPKMIVVGASAYPRIIDFEAFRRIADKVGAVVMVDMAHIAGLVAAGLHPSPVPYAEFVTTTTHKTLRGPRGGMIMCRE--------------EWAKTLNSNIFPGIQGGPLMHVIAAKAVAFKEALTPEFKKYQEQIVKNAKALAEGLTKRGFKLTSGGTDNHLMLVDLSQTELTGKVAEEALDRAGITVNKNGIPFDTRSPFITSGIRIGTPAATSHGLKEAEMEQVAGF 379          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_GEOMG (Serine hydroxymethyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=glyA PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.178e-55
Identity = 112/236 (47.46%), Postives = 148/236 (62.71%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 710
            +PKLIV GASAY R+ D+   R + +K  A+++ DMAHI+GLVAAG+ PSP  YA+ VTTTTHK+LRGPRG MI  R+              ++ + +N  +FPG+QGGP  H I   AVA K+A  PE+K YQEQ++ N    A  L++ G+ LVSGGT+NHL+LVNL    + G   E+ L+   I  NKNTVP +  S  V  G R+GTPA TS G  E +  +VA F   A+
Sbjct:  163 KPKLIVVGASAYPRVLDFAAFRAIADKVGALVMVDMAHIAGLVAAGLHPSPVPYAEFVTTTTHKTLRGPRGGMILCRE--------------EFAKTLNSNIFPGIQGGPLMHVIAAKAVAFKEALAPEFKLYQEQIVKNARTLADELMKRGFRLVSGGTDNHLMLVNLTGTELTGKVAEEALDKAGITVNKNTVPFETRSPFVTSGFRIGTPAATSHGLKEAEMVEVAAFIAEAL 384          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_DICNV (Serine hydroxymethyltransferase OS=Dichelobacter nodosus (strain VCS1703A) GN=glyA PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.178e-55
Identity = 108/229 (47.16%), Postives = 149/229 (65.07%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            RPK+I+AG SAY+++ D++R R++ +   A ++ DMAH++GLVAAG+ P+P  +ADVVT+TTHK+LRGPRG +I  +                 E+K+N A+FPG QGGP  H I   AVA K+A  P ++ YQEQV+ N    A+  +  GY++VSGGT+NHL+LV+L NK + G      L   HI  NKN+VP D  S  V  GIR+GTPA+T+RGF   +  KVA
Sbjct:  166 RPKMIIAGFSAYSQVLDFQRFREIADSVGAYLMVDMAHVAGLVAAGLYPNPVPFADVVTSTTHKTLRGPRGGIILAKANPT------------IEKKLNSAIFPGSQGGPLMHVIAAKAVAFKEALEPSFQKYQEQVVENAKTMAKVFIARGYDIVSGGTQNHLMLVSLINKGLTGKAANDALSRAHITVNKNSVPNDPQSPFVTSGIRIGTPAITTRGFGVNEVKKVA 382          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_BAUCH (Serine hydroxymethyltransferase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=glyA PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.178e-55
Identity = 111/229 (48.47%), Postives = 148/229 (64.63%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            +PK+I+ G SAY+R+ D++ +R+V +  KA +  DMAHI+GLVAAGV P+P  YADVVTTTTHK+L GPRG +I  + G KE+ K           K++ AVFPG QGGP  H I G A+ALK+A  PE+K YQ QV+ N        L   + +VSGGT+NHL L++L +K I G   +  L   +I  NKN +P D  S+ V  GIR+GTPA+T RGF E D  ++A
Sbjct:  166 KPKMIIGGFSAYSRVVDWDIMRQVADSIKAFLFVDMAHIAGLVAAGVYPNPVPYADVVTTTTHKTLAGPRGGLILAQGGSKEMYK-----------KLDSAVFPGAQGGPLMHVIAGKAIALKEAMEPEFKIYQHQVVKNAKTMVNVFLNRNFNVVSGGTDNHLFLLDLVDKNITGQEADAALSYTNITVNKNIIPNDPQSSFVTSGIRIGTPAITRRGFNETDAYQLA 383          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA3_PSEPF (Serine hydroxymethyltransferase 3 OS=Pseudomonas fluorescens (strain Pf0-1) GN=glyA3 PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.178e-55
Identity = 109/220 (49.55%), Postives = 147/220 (66.82%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGF 662
            +PK+IVAG SAY++  D+ R R++ +K  A++  DMAH++GLVAAG+ P+P  YADVVTTTTHK+LRGPRG +I        + K  +E+    E+K+N AVFPG QGGP  H I G AV  K+A  P +KAYQ+QV+ N    A   ++ GY++VSGGT+NHL LV+L  + + G   +  L   HI  NKN VP D  S  V  G+R+GTPA+T+RGF
Sbjct:  167 KPKMIVAGFSAYSKTLDFPRFRQIADKVGALLFVDMAHVAGLVAAGLYPNPLPYADVVTTTTHKTLRGPRGGLI--------LAKANEEI----EKKLNAAVFPGAQGGPLMHVIAGKAVCFKEALEPGFKAYQQQVIDNAQAMASVFIKRGYDVVSGGTDNHLFLVSLIRQGLTGKDADAALGRAHITVNKNAVPNDPQSPFVTSGLRIGTPAVTTRGF 374          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA2_PSEPF (Serine hydroxymethyltransferase 2 OS=Pseudomonas fluorescens (strain Pf0-1) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.178e-55
Identity = 109/229 (47.60%), Postives = 147/229 (64.19%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            +PK+IVAG SAY+++ D+ R R + +K  A +  DMAH++GLVAAGV P+P  +ADVVTTTTHK+LRGPRG +I  +               D E+K+N AVFPG QGGP  H I   A+  K+A  PE+KAYQ+QV+ N    A   +E G+++VSGGTENHL L++L  + I G   +  L    I  NKN+VP D  S  V  G+R GTPA+T+RGF E +  ++A
Sbjct:  166 KPKMIVAGFSAYSQILDFPRFRAIADKVGAYLFVDMAHVAGLVAAGVYPNPVPFADVVTTTTHKTLRGPRGGLILAKANA------------DIEKKLNSAVFPGAQGGPLEHVIAAKAICFKEALQPEFKAYQQQVVKNAQAMAGVFIERGFDVVSGGTENHLFLLSLIKQEISGKDADAALGKAFITVNKNSVPNDPRSPFVTSGLRFGTPAVTTRGFKEAECKELA 382          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA1_PSEF5 (Serine hydroxymethyltransferase 1 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.178e-55
Identity = 109/229 (47.60%), Postives = 148/229 (64.63%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            +PK+IVAG SAY+++ D+ R R++ +K  A +  DMAH++GLVAAGV P+P  +ADVVTTTTHK+LRGPRG +I  R               D E+K+N AVFPG QGGP  H I   A+  K+A  PE+KAYQEQV+ N    A+  +  G+++VSGGT+NHL L++L  + I G   +  L    I  NKN+VP D  S  V  G+R GTPA+T+RGF E +  ++A
Sbjct:  166 KPKMIVAGFSAYSQILDFPRFREIADKVGAYLFVDMAHVAGLVAAGVYPNPVPFADVVTTTTHKTLRGPRGGLILARANA------------DIEKKLNSAVFPGAQGGPLEHVIAAKAICFKEALQPEFKAYQEQVVKNAQAMAEVFIARGFDVVSGGTKNHLFLLSLIKQDISGKDADAALGKAFITVNKNSVPNDPRSPFVTSGLRFGTPAVTTRGFKEAECKELA 382          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_LEPCP (Serine hydroxymethyltransferase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=glyA PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.844e-55
Identity = 112/223 (50.22%), Postives = 145/223 (65.02%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEE 671
            +PKLI+AGASA+A   D+ER  KV     A  + DMAH +GL+AAGV P+P  +ADVVTTTTHK+LRGPRG +I     V +              +IN A+FPG+QGGP  H I G AVA ++A  PE+KAYQEQV+ N +  A+TL   G  +VSG TE+H++LV+L+ K I G   E +L   HI  NKN +P D    MV  GIR+G+PA+T+RGF EE
Sbjct:  167 KPKLIIAGASAFALRIDFERFAKVAKAVGAYFMVDMAHYAGLIAAGVYPNPVPFADVVTTTTHKTLRGPRGGLILMTDAVAK--------------QINSAIFPGIQGGPLMHVIAGKAVAFQEALQPEFKAYQEQVVKNATAMAETLTARGLRIVSGRTESHVMLVDLRPKGITGKEAEALLGRAHITCNKNGIPNDPQKPMVTSGIRLGSPAMTTRGFKEE 375          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_THETN (Serine hydroxymethyltransferase OS=Thermoanaerobacter tengcongensis GN=glyA PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.715e-55
Identity = 114/252 (45.24%), Postives = 161/252 (63.89%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGTKLK 758
            +PKLIVAGASAY R+ D+++ R++ +K  A ++ DMAHI+GLVAAG+ P+P  YADVVTTTTHK+LRGPRG  I  ++              ++ + I++A+FPG QGGP  H I   AV  K+A + E+K YQ++++ N    A  L+E G  LVSGGT+NHL+L++L+N  I G  +E  L+ V+I  NKN +P D +   V  G+R+GTPA+T+RG   ED  ++A        +A  IK EN   K K
Sbjct:  165 KPKLIVAGASAYPRIIDFKKFREIADKVGAYLMVDMAHIAGLVAAGLHPNPVPYADVVTTTTHKTLRGPRGGAILCKQ--------------EHAKAIDKALFPGTQGGPLMHIIAAKAVCFKEALSDEFKEYQKRIVENAKALANALMERGINLVSGGTDNHLMLLDLRNTGITGKELETRLDEVNITCNKNAIPFDPLGPNVTSGVRLGTPAVTTRGMKPEDMVEIADI------IANMIKDENYKEKAK 396          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_CLOP1 (Serine hydroxymethyltransferase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=glyA PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.715e-55
Identity = 107/237 (45.15%), Postives = 157/237 (66.24%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 713
            +PKLIVAGASAY+R+ D++ +R++ ++  A ++ D+AHI+GLVA G+ PSP  YAD VT+TTHK+LRGPRG +I  ++               + + +++ +FPG+QGGP  H I   AV  K+A  P +K Y EQV+ N    A+ L   G++LVS GT+NHL+LV+L NK I G   E +L+++ I  NKNTVP +  S  V  G+R+GTPA+T+RGF EE+  ++A   + A+K
Sbjct:  165 KPKLIVAGASAYSRIIDFKTLREIADEVGAYLMVDIAHIAGLVATGLHPSPVPYADFVTSTTHKTLRGPRGGLILCKE--------------KFAKALDKNIFPGIQGGPLMHIIAAKAVCFKEALEPSFKTYMEQVVKNAHVLAEALESYGFKLVSNGTDNHLILVDLTNKDITGKDAEILLDSIGITLNKNTVPNETRSPFVTSGVRIGTPAITTRGFKEEEMKEIASIINDAIK 387          
The following BLAST results are available for this feature:
BLAST of EY659702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_GEOSM2.178e-5547.19Serine hydroxymethyltransferase OS=Geobacter sp. (... [more]
GLYA_GEOMG2.178e-5547.46Serine hydroxymethyltransferase OS=Geobacter metal... [more]
GLYA_DICNV2.178e-5547.16Serine hydroxymethyltransferase OS=Dichelobacter n... [more]
GLYA_BAUCH2.178e-5548.47Serine hydroxymethyltransferase OS=Baumannia cicad... [more]
GLYA3_PSEPF2.178e-5549.55Serine hydroxymethyltransferase 3 OS=Pseudomonas f... [more]
GLYA2_PSEPF2.178e-5547.60Serine hydroxymethyltransferase 2 OS=Pseudomonas f... [more]
GLYA1_PSEF52.178e-5547.60Serine hydroxymethyltransferase 1 OS=Pseudomonas f... [more]
GLYA_LEPCP2.844e-5550.22Serine hydroxymethyltransferase OS=Leptothrix chol... [more]
GLYA_THETN3.715e-5545.24Serine hydroxymethyltransferase OS=Thermoanaerobac... [more]
GLYA_CLOP13.715e-5545.15Serine hydroxymethyltransferase OS=Clostridium per... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-B07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659702 ID=EY659702; Name=EY659702; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGAAATTGATTGTTGCTGGTGCTAGTGCTTATGCACGATTG
TACGATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGCTATAAT
GTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTGTCATCC
CTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCACAAATCA
CTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGTGAAAGA
GATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATGAAGAAAAAATAA
ATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACACAACCACACAATT
ACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCCAGAGTATAAAGC
CTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAATTTGCACAGACTCTGC
TCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAGAACCATCTAGTG
TTGGTGAATTTGAAAAACAAGAGAATTGATGGTTCCAGAGTTGAAAAAGT
GTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTGTTCCTGGGGATG
TGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCTCTTACT
TCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGTAGCATATTTCTTTGA
TGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGAAAACTCAGGAACAA
AGTTGAAGAATTCGTGGCCACAACACAGTCCGCTTACTTCAATCCGAGAT
TGCGAACTTCGCCATGATGTGANGAGTATGCAAACAGTCCCCACATTGGG
TTTGAAAAGAAACCATGAGTACAGACTGAGAGAAAACGCACT
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