EY659702

Overview
NameEY659702
Unique NameEY659702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBB (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=glyA PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.715e-55
Identity = 106/229 (46.29%), Postives = 153/229 (66.81%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            +PKLIVAGASAY+R+ D+++ R++C++  A ++ DMAHI+GLVAA + PSP  YAD VT+TTHK+LRGPRG +I  ++               Y + +++ +FPG+QGGP  H I   AV  K+A  P +K Y  +V+ NC +  + L++ G++LVS GT+NHL+LV+L NK I G   EK+L+ V I  NKNTVP +  S  V  G+R+GT A+T+RGF   D  ++A
Sbjct:  165 KPKLIVAGASAYSRIIDFKKFREICDEIGAYLMVDMAHIAGLVAAELHPSPVPYADFVTSTTHKTLRGPRGGLILCKE--------------KYAKDLDKNIFPGMQGGPLMHIIAAKAVCFKEALDPSFKEYMARVVENCKELGEQLVKRGFKLVSNGTDNHLILVDLNNKDITGKDAEKLLDEVGITLNKNTVPNETRSPFVTSGVRIGTAAITTRGFERRDMEEIA 379          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_ALKMQ (Serine hydroxymethyltransferase OS=Alkaliphilus metalliredigens (strain QYMF) GN=glyA PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.715e-55
Identity = 110/229 (48.03%), Postives = 151/229 (65.94%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            +PK+IVAGASAY R  D+++ R++ +   A ++ DMAHI+GLVA G+  +P EYAD VTTTTHK+LRGPRG  I  ++               Y + I++A+FPGLQGGP  H I   AVA K+A  P +KAYQEQV+ N     + L + G++LVS GT+ HL+L++L+NK I G   E++ + V I  NKNT+P D  S  V  GIR+GTPA+T+RG  EE+  K+A
Sbjct:  165 KPKMIVAGASAYPRAIDFKKFREIADAVGAYLMVDMAHIAGLVAVGLHQNPCEYADFVTTTTHKTLRGPRGGAILCKE--------------KYAKIIDKAIFPGLQGGPLMHVIAAKAVAFKEALEPGFKAYQEQVIKNAKALGEELKKQGFDLVSDGTDTHLLLIDLRNKNITGKDAERLFDEVGITVNKNTIPFDPQSPFVTSGIRIGTPAVTTRGMKEEEMKKIA 379          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_ACIRA (Serine hydroxymethyltransferase OS=Acinetobacter radioresistens GN=glyA PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.715e-55
Identity = 117/253 (46.25%), Postives = 160/253 (63.24%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF--------DAAVKLAVKIKSE 737
            +P++IVAG SAY+++ D++R R + +K  A +  DMAH++GLVAAGV P+P + ADV TTTTHK+LRGPR  +I        + K  +E+    E+K+  AVFPG QGGP  H +   A+  K+A  PEYKAYQ+QV+ N    A+ L+E GY++VSGGT+NHL L++L  + I G   +  L A HI  NKN+VP D  S  V  GIR+GTPA+T+RGF E +   +A +         D AV   VK K E
Sbjct:  166 KPRMIVAGFSAYSQIVDWQRFRDIADKIGAYLFVDMAHVAGLVAAGVYPNPVQIADVTTTTTHKTLRGPRSGLI--------LAKANEEI----EKKLQSAVFPGNQGGPLVHAVAAKAICFKEAMAPEYKAYQQQVVKNAQAMAEVLIERGYDVVSGGTKNHLFLLSLIKQDITGKDADAWLGAAHITVNKNSVPNDPRSPFVTSGIRIGTPAVTTRGFGEAEVRDLASWIADILDSKGDEAVINTVKAKVE 406          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_THEMA (Serine hydroxymethyltransferase OS=Thermotoga maritima GN=glyA PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.852e-55
Identity = 111/233 (47.64%), Postives = 151/233 (64.81%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 701
            +PK+IVAG SAYAR+ D++R R++ ++  A ++ DMAH +GLVAAG+ P+P EYA VVT+TTHK+LRGPRG +I       EI K            +++ +FPG+QGGP  H I   AV  K+A T E+K YQ+QV+ N  K A+   + GY +VSGGT+ HL LV+L  K I G   EK LE+  I  NKNT+P +  S  V  GIR+GTPA+T+RG  EE+  ++A   D
Sbjct:  164 KPKIIVAGGSAYARIIDFKRFREIADEVGAYLMVDMAHFAGLVAAGIHPNPLEYAHVVTSTTHKTLRGPRGGLILTND--PEIAKA-----------VDKTIFPGIQGGPLMHVIAAKAVCFKEAMTEEFKEYQKQVVKNAKKMAEEFQKRGYRIVSGGTDTHLFLVDLTPKDITGKAAEKALESCGITVNKNTIPNEKRSPFVASGIRIGTPAVTTRGMKEEEMEEIAEMID 383          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_GLUOX (Serine hydroxymethyltransferase OS=Gluconobacter oxydans GN=glyA PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.852e-55
Identity = 109/241 (45.23%), Postives = 155/241 (64.32%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVK 725
            +PK+IVAG+SAY R+ D+ R RK+ ++  A ++ DMAH +GLVAAG+ P+P   AD+ T+TTHK+LRGPRG +I                  D  +K+N AVFPGLQGGP  H I G AVA  +A + E+KAYQ++VL+N    A  L   G+++V+GGT++HL+LV+L+ K++ G   E +LE   I ANKN +P D     V  GIR+G+PA T+RGF E +F +V    D  +  A++
Sbjct:  177 KPKIIVAGSSAYPRVIDFARFRKIADEVGAYLMVDMAHFAGLVAAGLYPNPVPMADITTSTTHKTLRGPRGGIILTNNP-------------DLAKKVNSAVFPGLQGGPLMHVIAGKAVAFGEALSDEFKAYQKRVLANARALADELQNRGFDIVTGGTDSHLILVDLRPKKVTGKLAEAILERAGITANKNAIPFDPEKPFVTSGIRLGSPAATARGFGEAEFREVGRMIDEVLTAALE 404          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_GEOSL (Serine hydroxymethyltransferase OS=Geobacter sulfurreducens GN=glyA PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.852e-55
Identity = 113/236 (47.88%), Postives = 148/236 (62.71%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 710
            +PK+IV GASAY R  D+   R + +K  A+++ DMAHI+GLVAAG+ PSP  YA+ VTTTTHK+LRGPRG MI  R+              +Y + +N  +FPG+QGGP  H I   AVALK+A  PE+KAYQ Q++ N    A  L++ G+ LVSGGT+NHL+LVNL    + G   E+ L+   I  NKNTVP +  S  V  G R+GTPA T+ G  E + A VA F   A+
Sbjct:  163 KPKMIVVGASAYPRTIDFAAFRIIADKVGAVIMVDMAHIAGLVAAGLHPSPVPYAEFVTTTTHKTLRGPRGGMILCRE--------------EYAKTLNSNIFPGIQGGPLMHVIAAKAVALKEALQPEFKAYQAQIVKNAKALADELVKRGFRLVSGGTDNHLMLVNLTGTELTGKVAEESLDKAGITVNKNTVPFETRSPFVTSGFRIGTPAATTHGLKEAEMADVAGFIAEAL 384          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_GEOBB (Serine hydroxymethyltransferase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=glyA PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.852e-55
Identity = 109/231 (47.19%), Postives = 148/231 (64.07%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 695
            +PK+IV GASAY R+ D+E  R++ +K  A+++ DMAHI+GLVAAG+ PSP  YA+ VTTTTHK+LRGPRG MI  R+              D+ + +N  +FPG+QGGP  H I   AVA K+A TPE+K YQ Q++ N    A+ L + G++L SGGT+NHL+LV+L    + G   E+ L+   I  NKN +P D  S  +  GIR+GTPA TS G  E +  +VA F
Sbjct:  163 KPKMIVVGASAYPRIIDFEAFRRIADKVGAVVMVDMAHIAGLVAAGLHPSPVPYAEFVTTTTHKTLRGPRGGMIMCRE--------------DWAKTLNSNIFPGIQGGPLMHVIAAKAVAFKEALTPEFKQYQGQIVKNAKALAEGLTKRGFKLTSGGTDNHLMLVDLSQTELTGKVAEEALDRAGITVNKNGIPFDTRSPFITSGIRIGTPAATSHGLKEAEMEQVAGF 379          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_CLOPS (Serine hydroxymethyltransferase OS=Clostridium perfringens (strain SM101 / Type A) GN=glyA PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.852e-55
Identity = 107/237 (45.15%), Postives = 157/237 (66.24%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 713
            +PKLIVAGASAY+R+ D++ +R++ ++  A ++ D+AHI+GLVA G+ PSP  YAD VT+TTHK+LRGPRG +I  ++   ++              +++ +FPG+QGGP  H I   AV  K+A  P +K Y EQV+ N    A+ L   G++LVS GT+NHL+LV+L NK I G   E +L+++ I  NKNTVP +  S  V  G+R+GTPA+T+RGF EE+  ++A   + A+K
Sbjct:  165 KPKLIVAGASAYSRIIDFKTLREIADEVGAYLMVDIAHIAGLVATGLHPSPVPYADFVTSTTHKTLRGPRGGLILCKEKFAKV--------------LDKNIFPGIQGGPLMHIIAAKAVCFKEALEPSFKTYMEQVVKNAHVLAEALESYGFKLVSNGTDNHLILVDLTNKDITGKDAEILLDSIGITLNKNTVPNETRSPFVTSGVRIGTPAITTRGFKEEEMKEIASIINDAIK 387          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_VEREI (Serine hydroxymethyltransferase OS=Verminephrobacter eiseniae (strain EF01-2) GN=glyA PE=3 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 6.336e-55
Identity = 112/230 (48.70%), Postives = 146/230 (63.48%), Query Frame = 3
Query:    3 TRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            TRP+LI+AGASAY+   D+ R  +V     AI + DMAH +GL+AAG+ P+P  +ADVVT+TTHKSLRGPRG +I  R                +E+ I+ A+FPGLQGGP  H I   AVA ++A  P ++ YQEQVL N    AQTL   G  +VSGGT++H++LV+L+ K I G   E VL A H+  NKN +P D    MV  G+R+GTPA+T+RGF EE     A
Sbjct:  165 TRPRLIIAGASAYSLHIDFARFAQVAKDVGAIFMVDMAHYAGLIAAGLYPNPVPHADVVTSTTHKSLRGPRGGIILMRAA--------------HEKAIHSAIFPGLQGGPLMHVIAAKAVAFQEALQPGFRLYQEQVLKNAKVLAQTLAARGLRIVSGGTQSHMMLVDLRAKGITGKEAEAVLGAAHMTINKNAIPNDPEKPMVTSGVRIGTPAMTTRGFKEEQARSTA 380          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_SULNB (Serine hydroxymethyltransferase OS=Sulfurovum sp. (strain NBC37-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.336e-55
Identity = 115/229 (50.22%), Postives = 147/229 (64.19%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            +PK+IV GASAYAR  D+++ R++ ++  AI+ AD+AHI+GLV AG  PSPF YADVVTTTTHK+L GPRG MI                  D  +KIN A+FPGLQGGP  H I   AV  K   + E+K Y +QV +N S  A  L++ GY++VSGGT+NHLVLV+  +K   G   +  L A  I  NKNTVPG+  S  V  GIR+G+PALTSRG  E +F  +A
Sbjct:  163 QPKIIVCGASAYAREIDFKKFREIADEVGAILFADIAHIAGLVCAGEHPSPFPYADVVTTTTHKTLAGPRGGMIMTNDE-------------DIAKKINSAIFPGLQGGPLVHVIAAKAVGFKHNLSDEWKVYAKQVKANASILADVLIKRGYDVVSGGTDNHLVLVSFLDKEFSGKDADAALGAAGITVNKNTVPGETRSPFVTSGIRIGSPALTSRGMKEIEFEIIA 378          
The following BLAST results are available for this feature:
BLAST of EY659702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CLOBB3.715e-5546.29Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_ALKMQ3.715e-5548.03Serine hydroxymethyltransferase OS=Alkaliphilus me... [more]
GLYA_ACIRA3.715e-5546.25Serine hydroxymethyltransferase OS=Acinetobacter r... [more]
GLYA_THEMA4.852e-5547.64Serine hydroxymethyltransferase OS=Thermotoga mari... [more]
GLYA_GLUOX4.852e-5545.23Serine hydroxymethyltransferase OS=Gluconobacter o... [more]
GLYA_GEOSL4.852e-5547.88Serine hydroxymethyltransferase OS=Geobacter sulfu... [more]
GLYA_GEOBB4.852e-5547.19Serine hydroxymethyltransferase OS=Geobacter bemid... [more]
GLYA_CLOPS4.852e-5545.15Serine hydroxymethyltransferase OS=Clostridium per... [more]
GLYA_VEREI6.336e-5548.70Serine hydroxymethyltransferase OS=Verminephrobact... [more]
GLYA_SULNB6.336e-5550.22Serine hydroxymethyltransferase OS=Sulfurovum sp. ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-B07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659702 ID=EY659702; Name=EY659702; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGAAATTGATTGTTGCTGGTGCTAGTGCTTATGCACGATTG
TACGATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGCTATAAT
GTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTGTCATCC
CTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCACAAATCA
CTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGTGAAAGA
GATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATGAAGAAAAAATAA
ATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACACAACCACACAATT
ACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCCAGAGTATAAAGC
CTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAATTTGCACAGACTCTGC
TCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAGAACCATCTAGTG
TTGGTGAATTTGAAAAACAAGAGAATTGATGGTTCCAGAGTTGAAAAAGT
GTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTGTTCCTGGGGATG
TGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCTCTTACT
TCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGTAGCATATTTCTTTGA
TGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGAAAACTCAGGAACAA
AGTTGAAGAATTCGTGGCCACAACACAGTCCGCTTACTTCAATCCGAGAT
TGCGAACTTCGCCATGATGTGANGAGTATGCAAACAGTCCCCACATTGGG
TTTGAAAAGAAACCATGAGTACAGACTGAGAGAAAACGCACT
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