EY659702

Overview
NameEY659702
Unique NameEY659702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_MYXXD (Serine hydroxymethyltransferase OS=Myxococcus xanthus (strain DK 1622) GN=glyA PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.336e-55
Identity = 111/239 (46.44%), Postives = 150/239 (62.76%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLA 719
            +PK+IV GASAY R  D+ + R++ +   A ML DMAHI+GLVAAGV PSP   AD+VT+TTHK+LRGPRG ++  R+               Y + IN  +FPG+QGGP  H I G AVA K+A +PE+KAYQ Q+++N    A+ L   G  L SGGT+NHL+LV+L+ K++ G   E+VL+   I  NKN +P D    M   G+R+GTPA+T+RG  E + A V      A+  A
Sbjct:  166 KPKVIVVGASAYPRTLDFAKFREIADAVGAAMLVDMAHIAGLVAAGVHPSPVPVADIVTSTTHKTLRGPRGGLVLSRE--------------PYAKAINSQIFPGIQGGPLMHVIAGKAVAFKEALSPEFKAYQRQIVANAKALAEALQRAGLRLTSGGTDNHLMLVDLRPKKLTGKVAEEVLDKAGITVNKNMIPFDPEKPMTTSGVRVGTPAITTRGMREAEMAVVGRLIGEALDAA 390          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_MYCCT (Serine hydroxymethyltransferase OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=glyA PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.336e-55
Identity = 109/238 (45.80%), Postives = 160/238 (67.23%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNK-RIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 713
            +PKLIVAGASAY+R+ D+++ +++ +K  A ++ DMAHI+GLVAAGV P+P EYAD+VTTTTHK+LRG RG +I  ++              ++ +K++ AVFPG QGGP  + I G   AL +A+T E+K Y +Q++ N    A  L E G  LV+GG++NHL+ V++K+  +I G + EK+LE++ I  NKN +P D        GIR+GTPA+T+RGF EE+F +V     +A+K
Sbjct:  161 KPKLIVAGASAYSRIIDFKKFKEIADKVGAYLMVDMAHIAGLVAAGVHPNPMEYADIVTTTTHKTLRGARGGLILCKQ--------------EFAKKVDSAVFPGSQGGPLENLIAGKTQALLEASTDEFKEYGKQIVKNTKALANVLQENGLRLVAGGSDNHLINVDIKSTLQITGKKAEKILESIGIICNKNMIPFDTEKPFYTSGIRLGTPAMTTRGFKEEEFKQVGLIIVSALK 384          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_COXBU (Serine hydroxymethyltransferase OS=Coxiella burnetii GN=glyA PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.336e-55
Identity = 106/231 (45.89%), Postives = 152/231 (65.80%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 695
            +PK+I+AG SA++ + D++R R++ +   A  + D+AH++GLVAAGV PSP + ADV TTTTHK+LRGPR  +I  +               + E+++N AVFPG QGGP  H I   AVA K+A  PE+K Y +Q+L N    A+ + E GY +VSGGT+NHL LV+L +K I G   E  L   +I  NKNTVPG+  S  V  G+R+GTPA+T+RGF E++ +++A++
Sbjct:  166 KPKVILAGFSAFSGIVDWQRFREIADSVNAYFMTDIAHVAGLVAAGVYPSPVQIADVTTTTTHKTLRGPRAGLILAKANP------------ELEKRLNSAVFPGSQGGPLMHIIAAKAVAFKEAMQPEFKTYAQQILKNAKAMAEVMKERGYTIVSGGTQNHLFLVSLLDKNISGKEAEAALGRANITVNKNTVPGETRSPFVTSGLRIGTPAITTRGFKEKEASQLAHW 384          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_COXBR (Serine hydroxymethyltransferase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=glyA PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.336e-55
Identity = 106/231 (45.89%), Postives = 152/231 (65.80%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 695
            +PK+I+AG SA++ + D++R R++ +   A  + D+AH++GLVAAGV PSP + ADV TTTTHK+LRGPR  +I  +               + E+++N AVFPG QGGP  H I   AVA K+A  PE+K Y +Q+L N    A+ + E GY +VSGGT+NHL LV+L +K I G   E  L   +I  NKNTVPG+  S  V  G+R+GTPA+T+RGF E++ +++A++
Sbjct:  166 KPKVILAGFSAFSGIVDWQRFREIADSVNAYFMTDIAHVAGLVAAGVYPSPVQIADVTTTTTHKTLRGPRAGLILAKANP------------ELEKRLNSAVFPGSQGGPLMHIIAAKAVAFKEAMQPEFKTYAQQILKNAKAMAEVMKERGYTIVSGGTQNHLFLVSLLDKNISGKEAEAALGRANITVNKNTVPGETRSPFVTSGLRIGTPAITTRGFKEKEASQLAHW 384          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_COXBN (Serine hydroxymethyltransferase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=glyA PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.336e-55
Identity = 106/231 (45.89%), Postives = 152/231 (65.80%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 695
            +PK+I+AG SA++ + D++R R++ +   A  + D+AH++GLVAAGV PSP + ADV TTTTHK+LRGPR  +I  +               + E+++N AVFPG QGGP  H I   AVA K+A  PE+K Y +Q+L N    A+ + E GY +VSGGT+NHL LV+L +K I G   E  L   +I  NKNTVPG+  S  V  G+R+GTPA+T+RGF E++ +++A++
Sbjct:  166 KPKVILAGFSAFSGIVDWQRFREIADSVNAYFMTDIAHVAGLVAAGVYPSPVQIADVTTTTTHKTLRGPRAGLILAKANP------------ELEKRLNSAVFPGSQGGPLMHIIAAKAVAFKEAMQPEFKTYAQQILKNAKAMAEVMKERGYTIVSGGTQNHLFLVSLLDKNISGKEAEAALGRANITVNKNTVPGETRSPFVTSGLRIGTPAITTRGFKEKEASQLAHW 384          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_COXB1 (Serine hydroxymethyltransferase OS=Coxiella burnetii (strain CbuK_Q154) GN=glyA PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.336e-55
Identity = 106/231 (45.89%), Postives = 152/231 (65.80%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 695
            +PK+I+AG SA++ + D++R R++ +   A  + D+AH++GLVAAGV PSP + ADV TTTTHK+LRGPR  +I  +               + E+++N AVFPG QGGP  H I   AVA K+A  PE+K Y +Q+L N    A+ + E GY +VSGGT+NHL LV+L +K I G   E  L   +I  NKNTVPG+  S  V  G+R+GTPA+T+RGF E++ +++A++
Sbjct:  166 KPKVILAGFSAFSGIVDWQRFREIADSVNAYFMTDIAHVAGLVAAGVYPSPVQIADVTTTTTHKTLRGPRAGLILAKANP------------ELEKRLNSAVFPGSQGGPLMHIIAAKAVAFKEAMQPEFKTYAQQILKNAKAMAEVMKERGYTIVSGGTQNHLFLVSLLDKNISGKEAEAALGRANITVNKNTVPGETRSPFVTSGLRIGTPAITTRGFKEKEASQLAHW 384          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_CLOPE (Serine hydroxymethyltransferase OS=Clostridium perfringens GN=glyA PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.336e-55
Identity = 107/237 (45.15%), Postives = 157/237 (66.24%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 713
            +PKLIVAGASAY+R+ D++ +R++ ++  A ++ D+AHI+GLVA G+ PSP  YAD VT+TTHK+LRGPRG +I  ++   ++              +++ +FPG+QGGP  H I   AV  K+A  P +K Y EQV+ N    A+ L   G++LVS GT+NHL+LV+L NK I G   E +L+++ I  NKNTVP +  S  V  G+R+GTPA+T+RGF EE+  ++A   + A+K
Sbjct:  165 KPKLIVAGASAYSRIIDFKTLREIADEVGAYLMVDIAHIAGLVATGLHPSPVPYADFVTSTTHKTLRGPRGGLILCKEKFAKV--------------LDKNIFPGIQGGPLMHIIAAKAVCFKEALEPSFKTYMEQVVKNAHVLAEALEAYGFKLVSNGTDNHLILVDLTNKDITGKDAEILLDSIGITLNKNTVPNETRSPFVTSGVRIGTPAITTRGFKEEEMKEIASIINDAIK 387          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_AZOVD (Serine hydroxymethyltransferase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=glyA PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.336e-55
Identity = 111/229 (48.47%), Postives = 151/229 (65.94%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            +PK+IVAG SAY+++ D+ R R++ +K  A +  DMAH +GLVAAGV P+P  +ADVVTTTTHK+LRGPRG +I        + K  +E+    E+K+N AVFPG QGGP  H I   AV  K+A  P++K YQ+QV+ N    AQ  +E G+++VSGGTENHL LV+L  + I G   +  L    I  NKN+VP D  S  V  G+R+GTPA+T+RGF E +  ++A
Sbjct:  166 KPKMIVAGYSAYSQVLDFARFREIADKVGAYLFVDMAHFAGLVAAGVYPNPVPFADVVTTTTHKTLRGPRGGLI--------LAKANEEI----EKKLNSAVFPGGQGGPLEHVIAAKAVCFKEALQPDFKEYQQQVVKNAKAMAQVFIERGFDVVSGGTENHLFLVSLIKQEITGKDADAALGRAFITVNKNSVPNDPRSPFVTSGLRIGTPAVTTRGFKETECRELA 382          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA2_PSESM (Serine hydroxymethyltransferase 2 OS=Pseudomonas syringae pv. tomato GN=glyA2 PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.336e-55
Identity = 109/229 (47.60%), Postives = 146/229 (63.76%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            +PK+IVAG SAY+++ D+ R R + +K  A +  DMAH++GLVAAGV P+P  +ADVVTTTTHK+LRGPRG +I  R               D E+K+N AVFPG QGGP  H I   A+  K+A  PE+K YQ+QV+ N    A   +E G+++VSGGTENHL L++L  + I G   +  L    I  NKN+VP D  S  V  G+R GTPA+T+RGF E +  ++A
Sbjct:  166 KPKMIVAGFSAYSQILDFPRFRAIADKVGAYLFVDMAHVAGLVAAGVYPNPVPFADVVTTTTHKTLRGPRGGLILARANA------------DIEKKLNSAVFPGSQGGPLEHVIAAKAICFKEALQPEFKTYQQQVVKNAKAMAGVFIERGFDVVSGGTENHLFLLSLIKQDISGKDADAALGRAFITVNKNSVPNDPRSPFVTSGLRFGTPAVTTRGFKETECKELA 382          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_XANOR (Serine hydroxymethyltransferase OS=Xanthomonas oryzae pv. oryzae GN=glyA PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.276e-55
Identity = 116/259 (44.79%), Postives = 156/259 (60.23%), Query Frame = 3
Query:    9 PKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF----FDAAVKLAVKIKSENSGTKLKNSWP 770
            PK++VAG SAY++  D+ R R + +   A +  DMAHI+GLVAAGV PSP E+A VVT+TTHK+LRGPRG +I  +   +E+ K           K+   VFPG+QGGP  H I   AVA K+A  P +K YQ+QV+ N    A TL+  GY++VSGGTENHL+LV++  + + G   E  L   HI  NKN VP D  S  V  G+R+GTPA+T+RG+ E D   +A +     DA    AV  K  ++ T     +P
Sbjct:  167 PKMVVAGFSAYSQKIDWARFRAIADSVGAYLFVDMAHIAGLVAAGVYPSPMEHAHVVTSTTHKTLRGPRGGIIVAKGASEELQK-----------KLQSIVFPGIQGGPLMHVIAAKAVAFKEALEPAFKTYQQQVVKNAQAMANTLIARGYKIVSGGTENHLMLVDMIGRDVSGKDAEAALGKAHITVNKNAVPNDPRSPFVTSGLRLGTPAITTRGYKEPDSIDLANWIADVLDAPTDEAVLAKVRDAVTAQCKRYP 414          
The following BLAST results are available for this feature:
BLAST of EY659702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_MYXXD6.336e-5546.44Serine hydroxymethyltransferase OS=Myxococcus xant... [more]
GLYA_MYCCT6.336e-5545.80Serine hydroxymethyltransferase OS=Mycoplasma capr... [more]
GLYA_COXBU6.336e-5545.89Serine hydroxymethyltransferase OS=Coxiella burnet... [more]
GLYA_COXBR6.336e-5545.89Serine hydroxymethyltransferase OS=Coxiella burnet... [more]
GLYA_COXBN6.336e-5545.89Serine hydroxymethyltransferase OS=Coxiella burnet... [more]
GLYA_COXB16.336e-5545.89Serine hydroxymethyltransferase OS=Coxiella burnet... [more]
GLYA_CLOPE6.336e-5545.15Serine hydroxymethyltransferase OS=Clostridium per... [more]
GLYA_AZOVD6.336e-5548.47Serine hydroxymethyltransferase OS=Azotobacter vin... [more]
GLYA2_PSESM6.336e-5547.60Serine hydroxymethyltransferase 2 OS=Pseudomonas s... [more]
GLYA_XANOR8.276e-5544.79Serine hydroxymethyltransferase OS=Xanthomonas ory... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-B07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659702 ID=EY659702; Name=EY659702; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGAAATTGATTGTTGCTGGTGCTAGTGCTTATGCACGATTG
TACGATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGCTATAAT
GTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTGTCATCC
CTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCACAAATCA
CTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGTGAAAGA
GATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATGAAGAAAAAATAA
ATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACACAACCACACAATT
ACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCCAGAGTATAAAGC
CTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAATTTGCACAGACTCTGC
TCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAGAACCATCTAGTG
TTGGTGAATTTGAAAAACAAGAGAATTGATGGTTCCAGAGTTGAAAAAGT
GTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTGTTCCTGGGGATG
TGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCTCTTACT
TCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGTAGCATATTTCTTTGA
TGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGAAAACTCAGGAACAA
AGTTGAAGAATTCGTGGCCACAACACAGTCCGCTTACTTCAATCCGAGAT
TGCGAACTTCGCCATGATGTGANGAGTATGCAAACAGTCCCCACATTGGG
TTTGAAAAGAAACCATGAGTACAGACTGAGAGAAAACGCACT
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