EY659702

Overview
NameEY659702
Unique NameEY659702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_GRABC (Serine hydroxymethyltransferase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=glyA PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.412e-54
Identity = 112/237 (47.26%), Postives = 145/237 (61.18%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 713
            +PK+I+AG SAY R  D+ RIRKV ++  A  + DMAH +GLVAAG+ PSP  +A VVTTTTHK+LRGPRG MI                  +  +K N AVFPGLQGGP  H I   AVA  +A  P++K YQ+ V +N    A TL+E G  +VSGGT+ HL+LV+L+ K + G   ++ L   HI  NKN +P D     V  GIR+GTPA TSRGF E +F ++    D  V+
Sbjct:  173 KPKIIIAGGSAYPRFIDFPRIRKVADEVGAYFMVDMAHFAGLVAAGIYPSPLPHAHVVTTTTHKTLRGPRGGMILTND-------------LELGKKFNTAVFPGLQGGPLMHVIAAKAVAFGEALKPDFKTYQQSVANNAKVLASTLVERGLAIVSGGTDTHLMLVDLRPKNVTGKATDESLGRAHITTNKNAIPFDPQKPAVTSGIRLGTPAGTSRGFGEAEFREIGLMIDRVVE 396          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA2_RHIME (Serine hydroxymethyltransferase 2 OS=Rhizobium meliloti GN=glyA2 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.412e-54
Identity = 113/229 (49.34%), Postives = 145/229 (63.32%), Query Frame = 3
Query:    3 TRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKV 686
            TRPKLI+ G SAY RL D++RIR + +   A M+ DMAH +GLVA GV P+P E AD+VTTTTHK+LRGPRG MI         N Q      D  +K+N AVFPGLQGGP  H I   AVAL +A    ++ Y  Q+++N    A  L E GY++VSGGT+ HL+LV+L++K + G   E+ L    +  NKN +P D     V  GIR+GTPA TSRGF E +F +V
Sbjct:  166 TRPKLIITGGSAYPRLIDFKRIRAIADSVGAAMMVDMAHFAGLVAGGVHPNPVEIADIVTTTTHKTLRGPRGGMIL-------TNNQ------DVAKKVNSAVFPGLQGGPLMHVIAAKAVALGEALEDNFRQYARQMVANARALASALTERGYDIVSGGTDTHLILVDLRSKGVSGKDAEEALGRAGLTCNKNGIPFDPAPPAVTSGIRLGTPAATSRGFREAEFNEV 381          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA1_PSEU2 (Serine hydroxymethyltransferase 1 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.412e-54
Identity = 109/229 (47.60%), Postives = 146/229 (63.76%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            +PK+IVAG SAY+++ D+ R R + +K  A +  DMAH++GLVAAGV P+P  +ADVVTTTTHK+LRGPRG +I  R               + E+K+N AVFPG QGGP  H I   AV  K+A  PE+K YQ+QV+ N    A   +E G+++VSGGTENHL L++L  + I G   +  L    I  NKN+VP D  S  V  G+R GTPA+T+RGF E +  ++A
Sbjct:  166 KPKMIVAGFSAYSQILDFPRFRAIADKVGAYLFVDMAHVAGLVAAGVYPNPVPFADVVTTTTHKTLRGPRGGLILARANA------------EIEKKLNSAVFPGSQGGPLEHVIAAKAVCFKEALQPEFKTYQQQVVKNAKAMAGVFIERGFDVVSGGTENHLFLLSLIKQDISGKDADAALGRAFITVNKNSVPNDPRSPFVTSGLRFGTPAVTTRGFKEAECKELA 382          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA1_PSE14 (Serine hydroxymethyltransferase 1 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.412e-54
Identity = 109/229 (47.60%), Postives = 146/229 (63.76%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            +PK+IVAG SAY+++ D+ R R + +K  A +  DMAH++GLVAAGV P+P  +ADVVTTTTHK+LRGPRG +I  R               + E+K+N AVFPG QGGP  H I   AV  K+A  PE+K YQ+QV+ N    A   +E G+++VSGGTENHL L++L  + I G   +  L    I  NKN+VP D  S  V  G+R GTPA+T+RGF E +  ++A
Sbjct:  166 KPKMIVAGFSAYSQILDFPRFRAIADKVGAYLFVDMAHVAGLVAAGVYPNPVPFADVVTTTTHKTLRGPRGGLILARANA------------EIEKKLNSAVFPGSQGGPLEHVIAAKAVCFKEALQPEFKTYQQQVVKNAKAMAGVFIERGFDVVSGGTENHLFLLSLIKQDISGKDADAALGRAFITVNKNSVPNDPRSPFVTSGLRFGTPAVTTRGFKEAECKELA 382          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_SHISS (Serine hydroxymethyltransferase OS=Shigella sonnei (strain Ss046) GN=glyA PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.844e-54
Identity = 109/229 (47.60%), Postives = 149/229 (65.07%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            +PK+I+ G SAY+ + D+ ++R++ +   A +  DMAH++GLVAAGV P+P  +A VVTTTTHK+L GPRG +I  + G +E+ K           K+N AVFPG QGGP  H I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  166 KPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEELYK-----------KLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_SHIFL (Serine hydroxymethyltransferase OS=Shigella flexneri GN=glyA PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.844e-54
Identity = 109/229 (47.60%), Postives = 149/229 (65.07%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            +PK+I+ G SAY+ + D+ ++R++ +   A +  DMAH++GLVAAGV P+P  +A VVTTTTHK+L GPRG +I  + G +E+ K           K+N AVFPG QGGP  H I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  166 KPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEELYK-----------KLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_SHIF8 (Serine hydroxymethyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=glyA PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.844e-54
Identity = 109/229 (47.60%), Postives = 149/229 (65.07%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            +PK+I+ G SAY+ + D+ ++R++ +   A +  DMAH++GLVAAGV P+P  +A VVTTTTHK+L GPRG +I  + G +E+ K           K+N AVFPG QGGP  H I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  166 KPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEELYK-----------KLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_SHIDS (Serine hydroxymethyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=glyA PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.844e-54
Identity = 109/229 (47.60%), Postives = 149/229 (65.07%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            +PK+I+ G SAY+ + D+ ++R++ +   A +  DMAH++GLVAAGV P+P  +A VVTTTTHK+L GPRG +I  + G +E+ K           K+N AVFPG QGGP  H I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  166 KPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEELYK-----------KLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_SHIBS (Serine hydroxymethyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=glyA PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.844e-54
Identity = 109/229 (47.60%), Postives = 149/229 (65.07%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            +PK+I+ G SAY+ + D+ ++R++ +   A +  DMAH++GLVAAGV P+P  +A VVTTTTHK+L GPRG +I  + G +E+ K           K+N AVFPG QGGP  H I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  166 KPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEELYK-----------KLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_SHIB3 (Serine hydroxymethyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=glyA PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.844e-54
Identity = 109/229 (47.60%), Postives = 149/229 (65.07%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            +PK+I+ G SAY+ + D+ ++R++ +   A +  DMAH++GLVAAGV P+P  +A VVTTTTHK+L GPRG +I  + G +E+ K           K+N AVFPG QGGP  H I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  166 KPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEELYK-----------KLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383          
The following BLAST results are available for this feature:
BLAST of EY659702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_GRABC1.412e-5447.26Serine hydroxymethyltransferase OS=Granulibacter b... [more]
GLYA2_RHIME1.412e-5449.34Serine hydroxymethyltransferase 2 OS=Rhizobium mel... [more]
GLYA1_PSEU21.412e-5447.60Serine hydroxymethyltransferase 1 OS=Pseudomonas s... [more]
GLYA1_PSE141.412e-5447.60Serine hydroxymethyltransferase 1 OS=Pseudomonas s... [more]
GLYA_SHISS1.844e-5447.60Serine hydroxymethyltransferase OS=Shigella sonnei... [more]
GLYA_SHIFL1.844e-5447.60Serine hydroxymethyltransferase OS=Shigella flexne... [more]
GLYA_SHIF81.844e-5447.60Serine hydroxymethyltransferase OS=Shigella flexne... [more]
GLYA_SHIDS1.844e-5447.60Serine hydroxymethyltransferase OS=Shigella dysent... [more]
GLYA_SHIBS1.844e-5447.60Serine hydroxymethyltransferase OS=Shigella boydii... [more]
GLYA_SHIB31.844e-5447.60Serine hydroxymethyltransferase OS=Shigella boydii... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-B07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659702 ID=EY659702; Name=EY659702; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGAAATTGATTGTTGCTGGTGCTAGTGCTTATGCACGATTG
TACGATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGCTATAAT
GTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTGTCATCC
CTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCACAAATCA
CTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGTGAAAGA
GATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATGAAGAAAAAATAA
ATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACACAACCACACAATT
ACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCCAGAGTATAAAGC
CTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAATTTGCACAGACTCTGC
TCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAGAACCATCTAGTG
TTGGTGAATTTGAAAAACAAGAGAATTGATGGTTCCAGAGTTGAAAAAGT
GTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTGTTCCTGGGGATG
TGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCTCTTACT
TCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGTAGCATATTTCTTTGA
TGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGAAAACTCAGGAACAA
AGTTGAAGAATTCGTGGCCACAACACAGTCCGCTTACTTCAATCCGAGAT
TGCGAACTTCGCCATGATGTGANGAGTATGCAAACAGTCCCCACATTGGG
TTTGAAAAGAAACCATGAGTACAGACTGAGAGAAAACGCACT
back to top