EY659702

Overview
NameEY659702
Unique NameEY659702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_POLNS (Serine hydroxymethyltransferase OS=Polynucleobacter necessarius (strain STIR1) GN=glyA PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.155e-56
Identity = 113/231 (48.92%), Postives = 154/231 (66.67%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 695
            +PKLI+AGASAY++  D+ERI K+  +  AI + DMAH +GLVAAGV P+P  +AD+VT+TTHKSLRGPRG +I  +               ++E+ IN AVFPGLQGGP  H I   AVA K+A  P +K YQ+QV++N    A+TL+  G  +VSGGT++H++LV+L+ K + G   E+VL   HI  NKN +P D    MV  GIR+G+PA+T+RGF E +  +V  F
Sbjct:  166 KPKLIIAGASAYSKKIDFERIGKLAKEVGAIFMVDMAHYAGLVAAGVYPNPVPHADIVTSTTHKSLRGPRGGIILMKA--------------EHEKAINFAVFPGLQGGPLMHVIAAKAVAFKEAAEPGFKDYQKQVVANAKALAETLIARGLRIVSGGTDSHVMLVDLRAKSMTGKEAERVLGEAHITCNKNGIPNDPEKPMVTSGIRLGSPAMTTRGFKEAEARQVGNF 382          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_LEGPH (Serine hydroxymethyltransferase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=glyA PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.508e-56
Identity = 111/224 (49.55%), Postives = 152/224 (67.86%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEED 674
            +PKLI+AG SAY+R+ D+ R R++ +K  A ++AD+AH++GLVA G+ PSP  YADVVTTTTHK+LRGPRG +I        + K+ +E+    E+K+N +VFPG+QGGP  H I   AVA  +A  PE+K YQ+QVL+N       L   GY++VSGGT+NHL+LV+L NK I G   +  +   +I  NKN+VP D  S  V  G+R+GTPA T+RGF E +
Sbjct:  167 KPKLIIAGFSAYSRILDWARFREIADKVGAYLMADIAHVAGLVAVGLYPSPVPYADVVTTTTHKTLRGPRGGLI--------LCKENEEI----EKKLNSSVFPGMQGGPLMHVIAAKAVAFAEALLPEFKTYQQQVLANARTMCSVLQSRGYDIVSGGTDNHLLLVDLINKGITGKEADAAVGRANITVNKNSVPNDPRSPFVTSGLRLGTPAATTRGFKERE 378          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_LEGPA (Serine hydroxymethyltransferase OS=Legionella pneumophila (strain Paris) GN=glyA PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.508e-56
Identity = 111/224 (49.55%), Postives = 152/224 (67.86%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEED 674
            +PKLI+AG SAY+R+ D+ R R++ +K  A ++AD+AH++GLVA G+ PSP  YADVVTTTTHK+LRGPRG +I        + K+ +E+    E+K+N +VFPG+QGGP  H I   AVA  +A  PE+K YQ+QVL+N       L   GY++VSGGT+NHL+LV+L NK I G   +  +   +I  NKN+VP D  S  V  G+R+GTPA T+RGF E +
Sbjct:  167 KPKLIIAGFSAYSRILDWARFREIADKVGAYLMADIAHVAGLVAVGLYPSPVPYADVVTTTTHKTLRGPRGGLI--------LCKENEEI----EKKLNSSVFPGMQGGPLMHVIAAKAVAFAEALLPEFKTYQQQVLANARTMCSVLQSRGYDIVSGGTDNHLLLVDLINKGITGKEADAAVGRANITVNKNSVPNDPRSPFVTSGLRLGTPAATTRGFKERE 378          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_HELMI (Serine hydroxymethyltransferase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=glyA PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.508e-56
Identity = 118/251 (47.01%), Postives = 163/251 (64.94%), Query Frame = 3
Query:    3 TRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGTK 752
            T+PKLIVAGASAY R+ D+ R R + ++  A+++ DMAHI+GLVAAG+ PSP  YA+ VTTTTHK+LRGPRG MI  ++              ++  K+++A+FPGLQGGP  H I   AVA ++A  P + AYQ+Q+ +N +  A+ L + G++LVSGGT+NHL+LV+L+NK++ G   EK L+   I  NKN +P D  S  V  GIR+GTPA TSRG  E    +VA     A+ L +   SE +  K
Sbjct:  165 TKPKLIVAGASAYPRVLDFARFRAIADEVGAMLMVDMAHIAGLVAAGLHPSPVPYAEFVTTTTHKTLRGPRGGMILCKQ--------------EWAAKVDKAIFPGLQGGPLMHIIAAKAVAFQEAMAPAFTAYQKQIAANAAALAKGLTDRGFQLVSGGTDNHLMLVDLRNKQLTGKEAEKRLDECRITVNKNAIPFDPQSPFVTSGIRIGTPAATSRGMDEAAMDQVA----EAIHLCLSDGSEGAMQK 397          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_CLONN (Serine hydroxymethyltransferase OS=Clostridium novyi (strain NT) GN=glyA PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.508e-56
Identity = 108/237 (45.57%), Postives = 159/237 (67.09%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 713
            +PK+IVAGASAY+R+ D++R++++C++  A  + DMAHI+GL+AAG  PSP  YAD VTTTTHK+LRGPRG  I  ++               Y +++++A+FPG+QGGP  H I   AV   +A   +YK Y EQV+ N     + L +  ++LVSGGT+NHL+L++L NK I G   EK+L+++ I  NKNT+P +  S  V  GIR+GTPA+T+RGF EE+  ++AY  +  ++
Sbjct:  165 KPKMIVAGASAYSRVIDFKRLKQICDEVGAYFMVDMAHIAGLIAAGYHPSPVPYADFVTTTTHKTLRGPRGGAILCKE--------------KYAKQVDKAIFPGIQGGPLMHVIAAKAVCFGEALKDDYKNYIEQVVKNAKVLEEELKKYDFKLVSGGTDNHLLLIDLTNKDITGKDAEKLLDSIGITVNKNTIPFETKSPFVTSGIRIGTPAVTTRGFKEEEMKEIAYLINYVIE 387          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_DICTD (Serine hydroxymethyltransferase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=glyA PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.970e-56
Identity = 118/253 (46.64%), Postives = 160/253 (63.24%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFAKVA--------YFFDAAVKLAVKIKSE 737
            +PKLIVAGASAY R+ D+E+  ++     A  + DMAHI+GLVAAG+ PSP  YA  VT+TTHK+LRGPRG  I  +K              ++ ++I++AVFPG+QGGP  H I   AVA K+A +PE+K YQ+Q++ N    A+ L+++GY LVSGGT+NHL+LV+L++K I G   EK LE   I  NKN +P D     +  GIR+GTPALT+RG  E++   +A         F D  VK  VK + E
Sbjct:  163 KPKLIVAGASAYPRIIDFEKFAQIAEDVGAYFMVDMAHIAGLVAAGLHPSPVPYAHFVTSTTHKTLRGPRGGFILCKK--------------EFAKEIDKAVFPGIQGGPLMHVIAAKAVAFKEAMSPEFKEYQKQIVLNAKAMAEELIKLGYRLVSGGTDNHLMLVDLRDKGITGKEAEKALEEAGITVNKNAIPFDPQPPTITSGIRIGTPALTTRGMKEDEMRYIARLIHEVLSNFKDERVKEKVKKEVE 401          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_CLOD6 (Serine hydroxymethyltransferase OS=Clostridium difficile (strain 630) GN=glyA PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.970e-56
Identity = 114/256 (44.53%), Postives = 164/256 (64.06%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGTKLKNSWP 770
            +PK+IVAGASAY R  D+++ R++ ++  A+++ DMAHI+GLVAAG+  +P E AD VTTTTHK+LRGPRG +I  ++               Y + I++A+FPG+QGGP  H I   AV  K+A + E+K YQ QV  N    A+ L++  ++L+SGGT+NHL+L++L NK I G   EK L+  +I ANKNT+P D + A+V  GIR+GTPA+T+RG  EED A +A   D  +    + K+      L   +P
Sbjct:  164 KPKMIVAGASAYPREIDFKKFREIADEVGALLMVDMAHIAGLVAAGLHQNPCEVADFVTTTTHKTLRGPRGGVILCKE--------------KYAKDIDKAIFPGIQGGPLEHIIASKAVCFKEALSDEFKEYQVQVAKNAKALAEELIKRDFKLISGGTDNHLILLDLTNKNITGKAAEKRLDDAYITANKNTIPFDPNGALVTSGIRLGTPAVTTRGMKEEDMAIIAEAIDLCLTYDEESKARTLVVGLTEKYP 405          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBA (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=glyA PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.360e-56
Identity = 107/229 (46.72%), Postives = 155/229 (67.69%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            +PKLIVAGASAY+R+ D+++ R++C++  A ++ DMAHI+GLVAAG+ PSP  YAD VT+TTHK+LRGPRG +I  ++               Y + +++ +FPG+QGGP  H I   AV  K+A  P +K Y  +V+ NC +  + L++ G++LVS GT+NHL+LV+L NK I G   EK+L+ V I  NKNTVP +  S  V  G+R+GT A+T+RGF  +D  ++A
Sbjct:  165 KPKLIVAGASAYSRIIDFKKFREICDEIGAYLMVDMAHIAGLVAAGLHPSPVPYADFVTSTTHKTLRGPRGGLILCKE--------------KYAKDLDKNIFPGMQGGPLMHIIAAKAVCFKEALDPSFKEYMARVVENCKELGEQLVKRGFKLVSNGTDNHLILVDLNNKDITGKDAEKLLDEVGITLNKNTVPNETRSPFVTSGVRIGTAAITTRGFERKDMEEIA 379          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_THEPX (Serine hydroxymethyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=glyA PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.388e-56
Identity = 117/252 (46.43%), Postives = 162/252 (64.29%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGTKLK 758
            +PKLIVAGASAY R+ D++R R++ +K  A ++ DMAHI+GLVAAG+ P+P  YADVVTTTTHK+LRGPRG  I  ++              +Y + I++A+FPG QGGP  H I   AV  K+A T E+K YQ++++ N    A  L+E G  LVSGGT+NHL+L++L+N  I G  +E  L+ V+I  NKN +P D +   V  G+R+GTPA+T+RG   ED  ++A   D  V +   I+ EN   K K
Sbjct:  165 KPKLIVAGASAYPRIIDFKRFREIADKVGAYLMVDMAHIAGLVAAGLHPNPVPYADVVTTTTHKTLRGPRGGAILCKE--------------EYAKAIDKALFPGTQGGPLMHIIAAKAVCFKEALTDEFKEYQKRIVENAKALANALMERGINLVSGGTDNHLMLLDLRNTGITGKELETRLDEVNITCNKNAIPFDPLGPNVTSGVRLGTPAVTTRGMKPEDMVEIA---DIIVNV---IRDENYKEKAK 396          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_THEP3 (Serine hydroxymethyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=glyA PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.388e-56
Identity = 117/252 (46.43%), Postives = 162/252 (64.29%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGTKLK 758
            +PKLIVAGASAY R+ D++R R++ +K  A ++ DMAHI+GLVAAG+ P+P  YADVVTTTTHK+LRGPRG  I  ++              +Y + I++A+FPG QGGP  H I   AV  K+A T E+K YQ++++ N    A  L+E G  LVSGGT+NHL+L++L+N  I G  +E  L+ V+I  NKN +P D +   V  G+R+GTPA+T+RG   ED  ++A   D  V +   I+ EN   K K
Sbjct:  165 KPKLIVAGASAYPRIIDFKRFREIADKVGAYLMVDMAHIAGLVAAGLHPNPVPYADVVTTTTHKTLRGPRGGAILCKE--------------EYAKAIDKALFPGTQGGPLMHIIAAKAVCFKEALTDEFKEYQKRIVENAKALANALMERGINLVSGGTDNHLMLLDLRNTGITGKELETRLDEVNITCNKNAIPFDPLGPNVTSGVRLGTPAVTTRGMKPEDMVEIA---DIIVNV---IRDENYKEKAK 396          
The following BLAST results are available for this feature:
BLAST of EY659702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_POLNS1.155e-5648.92Serine hydroxymethyltransferase OS=Polynucleobacte... [more]
GLYA_LEGPH1.508e-5649.55Serine hydroxymethyltransferase OS=Legionella pneu... [more]
GLYA_LEGPA1.508e-5649.55Serine hydroxymethyltransferase OS=Legionella pneu... [more]
GLYA_HELMI1.508e-5647.01Serine hydroxymethyltransferase OS=Heliobacterium ... [more]
GLYA_CLONN1.508e-5645.57Serine hydroxymethyltransferase OS=Clostridium nov... [more]
GLYA_DICTD1.970e-5646.64Serine hydroxymethyltransferase OS=Dictyoglomus tu... [more]
GLYA_CLOD61.970e-5644.53Serine hydroxymethyltransferase OS=Clostridium dif... [more]
GLYA_CLOBA3.360e-5646.72Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_THEPX4.388e-5646.43Serine hydroxymethyltransferase OS=Thermoanaerobac... [more]
GLYA_THEP34.388e-5646.43Serine hydroxymethyltransferase OS=Thermoanaerobac... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-B07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659702 ID=EY659702; Name=EY659702; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGAAATTGATTGTTGCTGGTGCTAGTGCTTATGCACGATTG
TACGATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGCTATAAT
GTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTGTCATCC
CTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCACAAATCA
CTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGTGAAAGA
GATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATGAAGAAAAAATAA
ATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACACAACCACACAATT
ACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCCAGAGTATAAAGC
CTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAATTTGCACAGACTCTGC
TCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAGAACCATCTAGTG
TTGGTGAATTTGAAAAACAAGAGAATTGATGGTTCCAGAGTTGAAAAAGT
GTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTGTTCCTGGGGATG
TGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCTCTTACT
TCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGTAGCATATTTCTTTGA
TGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGAAAACTCAGGAACAA
AGTTGAAGAATTCGTGGCCACAACACAGTCCGCTTACTTCAATCCGAGAT
TGCGAACTTCGCCATGATGTGANGAGTATGCAAACAGTCCCCACATTGGG
TTTGAAAAGAAACCATGAGTACAGACTGAGAGAAAACGCACT
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