EY659702

Overview
NameEY659702
Unique NameEY659702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_POLNA (Serine hydroxymethyltransferase OS=Polaromonas naphthalenivorans (strain CJ2) GN=glyA PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.485e-56
Identity = 109/225 (48.44%), Postives = 149/225 (66.22%), Query Frame = 3
Query:    3 TRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEED 674
            T+PKLI+AGASAY+   D+ER  +V     AI + DMAH +GL+AAG+ P+P  +AD+VT+TTHKSLRGPRG +I  +                +E+ IN A+FPGLQGGP  H I   A+A K+A +PE+K YQ+QVL N    A+TL + G  +VSG TE+H++LV+L+ K I G   E VL + H+  NKN +P D    MV  G+R+GTPA+T+RGF +E+
Sbjct:  165 TKPKLIIAGASAYSLAIDFERFARVAKDVGAIFMVDMAHYAGLIAAGIYPNPVPHADIVTSTTHKSLRGPRGGIILMKA--------------QHEKIINSAIFPGLQGGPLMHVIAAKAIAFKEALSPEFKIYQQQVLKNAQIVAETLTQRGLRIVSGRTESHVMLVDLRAKGITGKEAEAVLGSAHMTINKNAIPNDPEKPMVTSGVRIGTPAMTTRGFGDEE 375          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_CLOPH (Serine hydroxymethyltransferase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=glyA PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.485e-56
Identity = 116/245 (47.35%), Postives = 151/245 (61.63%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE 737
            +PKLIVAGASAYAR  D++R R++ +   A ++ DMAHI+GLVAAG   SP  YA V TTTTHK+LRGPRG MI   +   E            E K+N+++FPG QGGP  H I   A+  K+A    +K Y  +++SN    A  L   G+ LVSGGT+NHL+L++L+N  I G   E +L+  +I  NKNTVP D  S  V  GIR+GTPA+T+RGF E+D A VA      VK   K K +
Sbjct:  165 KPKLIVAGASAYARKIDFKRFREIADLVGAYLMVDMAHIAGLVAAGYHQSPIPYAHVTTTTTHKTLRGPRGGMILSSEEFAE------------EHKLNKSIFPGTQGGPLMHVIAAKAICFKEALDDSFKDYAGKIISNAGALANELTARGFNLVSGGTDNHLMLIDLQNMNITGKEAEHILDEANITCNKNTVPNDPASPFVTSGIRLGTPAITTRGFNEKDMAVVAEAISLVVKDVDKNKEQ 397          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_PSEU5 (Serine hydroxymethyltransferase OS=Pseudomonas stutzeri (strain A1501) GN=glyA PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.776e-56
Identity = 109/229 (47.60%), Postives = 151/229 (65.94%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            +PK+IVAG SAY++  D+ R R++ +K  A +  DMAH++GLVAAGV P+P  +ADVVTTTTHK+LRGPRG +I  +K              + E+K+N AVFPG QGGP  H I   AV  K+A  PE+KAYQ+QV+ N    A+  ++ G+++VSGGT+NHL L++L  + I G   +  L   HI  NKN+VP D  S  V  G+R+GTPA+T+RGF E +  ++A
Sbjct:  166 KPKMIVAGFSAYSQKLDFARFREIADKVGAYLFVDMAHVAGLVAAGVYPNPVPFADVVTTTTHKTLRGPRGGLILAKKNE------------EIEKKLNSAVFPGAQGGPLEHVIAAKAVCFKEALQPEFKAYQQQVVKNAQAMAEVFIQRGFDVVSGGTQNHLFLLSLIKQDITGKDADAALGRAHITVNKNSVPNDPRSPFVTSGLRIGTPAVTTRGFGEAECRELA 382          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_CELJU (Serine hydroxymethyltransferase OS=Cellvibrio japonicus (strain Ueda107) GN=glyA PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.776e-56
Identity = 111/224 (49.55%), Postives = 151/224 (67.41%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEED 674
            +PK+IVAG SAY+++ D++R R + +K  A ++ DMAH++GLVAAG+ P+P + ADV T+TTHK+LRGPRG +I        + K  +E+    E+K+N AVFPG QGGP  H I   A++ K+A TPEYK YQ+QV+ N    A T +E G ++VSGGTENHL+LV+L  K   G   ++ L   HI  NKN VP D  S  V  GIR+GTPA+T+RGF E +
Sbjct:  167 KPKMIVAGFSAYSQVLDWQRFRDIADKVGAYLMVDMAHVAGLVAAGLYPNPVQIADVTTSTTHKTLRGPRGGII--------LAKANEEI----EKKLNSAVFPGGQGGPLMHVIAAKAISFKEAMTPEYKDYQQQVVKNAKAMAATFIERGIKIVSGGTENHLMLVDLIGKPYSGKDADEALGKAHITVNKNAVPNDPRSPFVTSGIRVGTPAITTRGFKEAE 378          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_CARHZ (Serine hydroxymethyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=glyA PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.776e-56
Identity = 109/237 (45.99%), Postives = 160/237 (67.51%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 713
            +PK+IVAGASAY R+ D++ ++++ ++  A ++ DMAHI+GLVAAG+ PSP  YADVVTTTTHK+LRGPRG +IF +               ++  KI++ VFPG+QGGP  H I   AVA K+A +PE++ YQ+QV++N    A+ L + G  LVSGGT+NHL+LV+++   + G R E++L+ + +  NKN +P D  S  V  GIR+GTPA+T+RG  E + A++A      +K
Sbjct:  167 KPKMIVAGASAYPRVIDFKHLKEIADEVGAYLMVDMAHIAGLVAAGLHPSPIPYADVVTTTTHKTLRGPRGGVIFCKA--------------EHAAKIDKTVFPGVQGGPLMHVIAAKAVAFKEALSPEFREYQQQVVNNAKALAEELKKQGLRLVSGGTDNHLMLVDVRPVGLTGKRAEQLLDEIGVTVNKNAIPYDPESPNVTSGIRIGTPAVTTRGMKEGEMAEIAEIIALVLK 389          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_BART1 (Serine hydroxymethyltransferase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=glyA PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.776e-56
Identity = 119/278 (42.81%), Postives = 170/278 (61.15%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF---------------DAAVKLAVKIKSENSGTKLKNSWPQHSPLTS 791
            +PKLI+AG S+Y R +D+ER R++ ++  A +L DM+HI+GLVA GV PSP  +A +VTTTTHKSLRGPRG +I                     +KIN A+FPGLQGGP  H I   AVA  +A  P +K+Y   V++N    A+TL   G+ +VSGGT+NHL+LV+L++K + G R E  L   HI  NKN +P D  +  +  GIR+G+PA T+RGF+E++F +VA+                 + AV++AVK K E+    + N +P +S L++
Sbjct:  176 KPKLIIAGGSSYPRFWDWERFREIADEIGAHLLVDMSHIAGLVAGGVHPSPVPHAHIVTTTTHKSLRGPRGGLILTNDEA-------------LSKKINSAIFPGLQGGPLMHVIAAKAVAFGEALHPSFKSYSVNVVANAKTLAKTLQSNGFNIVSGGTDNHLLLVDLRSKNLTGKRAELALGRAHITCNKNGIPFDPETPSITSGIRLGSPAATTRGFLEKEFVQVAHLIAEVLDGLRNAKSDEDNHAVEMAVKKKVED----ITNQFPLYSYLST 436          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_BARHE (Serine hydroxymethyltransferase OS=Bartonella henselae GN=glyA PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.776e-56
Identity = 115/276 (41.67%), Postives = 172/276 (62.32%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF---------------DAAVKLAVKIKSENSGTKLKNSWPQHSPL 785
            +PKLI+AG SAY+RL+D+++ R++ ++  A +L DM+HI+GLVA GV PSP  +A +VTTTTHKSLRGPRG +I     +               +KIN A+FPGLQGGP  H I   AVA ++A  P +K Y   V++N    A+TL   G+++VSGGT+NHL+LV+L++K++ G   E  L   HI  NKN++P D+ +  +  GIR+G+PA T+RGF E +F ++A+                 ++AV++ V+ K E+    + N +P +S L
Sbjct:  176 KPKLIIAGGSAYSRLWDWKKFREIADEIGAYLLVDMSHIAGLVAGGVHPSPVPHAHIVTTTTHKSLRGPRGGLILTNDEI-------------LAKKINSAIFPGLQGGPLMHVIAAKAVAFEEALQPVFKDYSANVVANAKTLAKTLQSNGFDIVSGGTDNHLLLVDLRSKKVTGKCAELALGRAHITCNKNSIPFDLETPFITSGIRLGSPAATTRGFAENEFIEIAHMISEILDNLGMAKSDEDNSAVEMVVRKKVED----MTNKFPLYSYL 434          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_THEP1 (Serine hydroxymethyltransferase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=glyA PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.277e-55
Identity = 112/250 (44.80%), Postives = 155/250 (62.00%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGTK 752
            +PK+IVAG SAYAR+ D++R R++ ++  A ++ DMAH +GLVAAG+ P+P EYA VVT+TTHK+LRGPRG +I                  D  + +++ +FPG+QGGP  H I   AV  K+A T E+K YQ+QV+ N  K A+   + GY +VSGGT+ HL LV+L  K I G   EK LE+  I  NKNT+P +  S  V  GIR+GTPA+T+RG  EE+  ++A   D  +     +  EN   K
Sbjct:  164 KPKIIVAGGSAYARIIDFKRFREIADEVGAYLMVDMAHFAGLVAAGIHPNPLEYAHVVTSTTHKTLRGPRGGLILTNDP-------------DIAKAVDKTIFPGIQGGPLMHVIAAKAVCFKEAMTEEFKEYQKQVVKNAKKMAEEFQKRGYRIVSGGTDTHLFLVDLTPKDITGKAAEKALESCGITVNKNTIPNEKRSPFVASGIRIGTPAVTTRGMKEEEMEEIAEMIDLVLS---NVTDENGTVK 397          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_ACICJ (Serine hydroxymethyltransferase OS=Acidiphilium cryptum (strain JF-5) GN=glyA PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.277e-55
Identity = 117/248 (47.18%), Postives = 153/248 (61.69%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSG 746
            +PKLI+AG SAY R  D+ RIRKV ++  A  + DMAH +GLVAAG+ PSP  +A VVTTTTHK+LRGPRG MI                  D  +KIN AVFPGLQGGP  H I   AVA  +A  PE++AYQ+ +  N    A+TL+E G ++V+GGT+ HL+LV+L+ K + G   E  LE  H+ ANKN +P D     V  GIR+GTPA T+RGF  ++F  V  F    V++   + + N G
Sbjct:  177 KPKLIIAGGSAYPRFIDFARIRKVADEVGAYFMVDMAHFAGLVAAGIFPSPVPHAHVVTTTTHKTLRGPRGGMILSND-------------LDLGKKINSAVFPGLQGGPLMHVIAAKAVAFGEALRPEFRAYQKALAENAKVLAETLVEGGLDIVTGGTDCHLMLVDLRPKNVTGKAAEASLERAHMTANKNAIPFDPAKPAVTSGIRLGTPAATTRGFGPDEFRMVGRFI---VEVLDGLSASNDG 408          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_XANCP (Serine hydroxymethyltransferase OS=Xanthomonas campestris pv. campestris GN=glyA PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.667e-55
Identity = 116/260 (44.62%), Postives = 160/260 (61.54%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF----FDAAVKLAVKIKSENSGTKLKNSWP 770
            +PK+++AG SAY++  D+ R R + +   A +  DMAH++GLVAAGV PSP ++A VVT+TTHK+LRGPRG +I   KG  E          D  +K+   VFPG+QGGP  H I   AVA K+A  PE+K YQ+QV+ N    A TL+  GY++VSGGTENHL+LV++  + + G   E  L   HI  NKN+VP D  S  V  G+R+GTPA+T+RG+ E+D   +A +     DA    AV  K  ++ T     +P
Sbjct:  166 KPKMVIAGFSAYSQKIDWARFRAIADSVGAYLFVDMAHVAGLVAAGVYPSPMDHAHVVTSTTHKTLRGPRGGIIL-AKGAGE----------DLVKKLQSIVFPGIQGGPLMHVIAAKAVAFKEALEPEFKTYQQQVVKNAQAMANTLIARGYKIVSGGTENHLMLVDMIGRDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTSGLRLGTPAITTRGYQEQDCVDLANWIADVLDAPADDAVLAKVRDAVTAQCKKYP 414          
The following BLAST results are available for this feature:
BLAST of EY659702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_POLNA7.485e-5648.44Serine hydroxymethyltransferase OS=Polaromonas nap... [more]
GLYA_CLOPH7.485e-5647.35Serine hydroxymethyltransferase OS=Clostridium phy... [more]
GLYA_PSEU59.776e-5647.60Serine hydroxymethyltransferase OS=Pseudomonas stu... [more]
GLYA_CELJU9.776e-5649.55Serine hydroxymethyltransferase OS=Cellvibrio japo... [more]
GLYA_CARHZ9.776e-5645.99Serine hydroxymethyltransferase OS=Carboxydothermu... [more]
GLYA_BART19.776e-5642.81Serine hydroxymethyltransferase OS=Bartonella trib... [more]
GLYA_BARHE9.776e-5641.67Serine hydroxymethyltransferase OS=Bartonella hens... [more]
GLYA_THEP11.277e-5544.80Serine hydroxymethyltransferase OS=Thermotoga petr... [more]
GLYA_ACICJ1.277e-5547.18Serine hydroxymethyltransferase OS=Acidiphilium cr... [more]
GLYA_XANCP1.667e-5544.62Serine hydroxymethyltransferase OS=Xanthomonas cam... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-B07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659702 ID=EY659702; Name=EY659702; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGAAATTGATTGTTGCTGGTGCTAGTGCTTATGCACGATTG
TACGATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGCTATAAT
GTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTGTCATCC
CTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCACAAATCA
CTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGTGAAAGA
GATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATGAAGAAAAAATAA
ATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACACAACCACACAATT
ACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCCAGAGTATAAAGC
CTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAATTTGCACAGACTCTGC
TCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAGAACCATCTAGTG
TTGGTGAATTTGAAAAACAAGAGAATTGATGGTTCCAGAGTTGAAAAAGT
GTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTGTTCCTGGGGATG
TGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCTCTTACT
TCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGTAGCATATTTCTTTGA
TGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGAAAACTCAGGAACAA
AGTTGAAGAATTCGTGGCCACAACACAGTCCGCTTACTTCAATCCGAGAT
TGCGAACTTCGCCATGATGTGANGAGTATGCAAACAGTCCCCACATTGGG
TTTGAAAAGAAACCATGAGTACAGACTGAGAGAAAACGCACT
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