EY659687

Overview
NameEY659687
Unique NameEY659687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659687_ssr530 microsatellite EY659687_ssr530:530..547. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2046 contig Csv1_Contig2046:26..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659687 vs. ExPASy Swiss-Prot
Match: GLRX2_PONAB (Glutaredoxin-2, mitochondrial OS=Pongo abelii GN=GLRX2 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.639e-18
Identity = 47/101 (46.53%), Postives = 65/101 (64.36%), Query Frame = 1
Query:   64 SKEELEIA-LNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 363
            S E LE A +N+ +E +S N VV+FSKT C YCT  K+L + +  ++KVVELD+   G++ Q AL + TG RTVP +F+ G  IGG       H+ GKL+P
Sbjct:   45 SLENLETAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFRDMNVNYKVVELDLLEYGNQFQDALYKMTGGRTVPRIFVNGTFIGGATDTHRLHKEGKLLP 145          
BLAST of EY659687 vs. ExPASy Swiss-Prot
Match: GLRX2_BOVIN (Glutaredoxin-2, mitochondrial OS=Bos taurus GN=GLRX2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.769e-18
Identity = 43/92 (46.74%), Postives = 60/92 (65.22%), Query Frame = 1
Query:   88 LNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 363
            +N+ +E +S+N VV+FSKT C YCT  K L   +  ++KVVELD+   GS+ Q AL + TG+RTVP +F+ G  IGG       H+ GKL+P
Sbjct:   51 VNQIQETISNNCVVIFSKTSCSYCTMAKNLFHDMNVNYKVVELDMLEYGSQFQDALHKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLP 142          
BLAST of EY659687 vs. ExPASy Swiss-Prot
Match: TRXR3_HUMAN (Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 6.229e-18
Identity = 47/118 (39.83%), Postives = 70/118 (59.32%), Query Frame = 1
Query:    4 VDPRVRKLKSRQMGLFQSKISKEELEIALNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 357
            + P  R+ +    G  +S  ++EEL   L     ++  + VV+FSK+YC + TRVKEL   LG    V+ELD   DG+++Q  L+E T Q+TVPN+F+   H+GGCD   + +Q G L
Sbjct:  142 LSPPGRRARLSSPGPSRSSEAREELRRHL---VGLIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLL 256          
BLAST of EY659687 vs. ExPASy Swiss-Prot
Match: GRXC4_ARATH (Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 6.229e-18
Identity = 45/103 (43.69%), Postives = 63/103 (61.17%), Query Frame = 1
Query:   49 FQSKISKEELEIALNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 357
            F S +S        +  K+ +SS+ +V+FSK+YC YC + K + ++L     VVELD   DG  IQ AL E  G+RTVP VFI GKH+GG D  V+ ++ G+L
Sbjct:   19 FISMVSSAASSPEADFVKKTISSHKIVIFSKSYCPYCKKAKSVFRELDQVPYVVELDEREDGWSIQTALGEIVGRRTVPQVFINGKHLGGSDDTVDAYESGEL 121          
BLAST of EY659687 vs. ExPASy Swiss-Prot
Match: GLRX2_HUMAN (Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=GLRX2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.229e-18
Identity = 46/101 (45.54%), Postives = 64/101 (63.37%), Query Frame = 1
Query:   64 SKEELEIA-LNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 363
            S E L  A +N+ +E +S N VV+FSKT C YCT  K+L   +  ++KVVELD+   G++ Q AL + TG+RTVP +F+ G  IGG       H+ GKL+P
Sbjct:   48 SLENLATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLP 148          
BLAST of EY659687 vs. ExPASy Swiss-Prot
Match: GRS10_ORYSJ (Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. japonica GN=GRXS10 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 8.135e-18
Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   91 NKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELD-IESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 357
            +  K  ++ NPVV++SK++C Y   VK L K++G    V+ELD + + G ++Q  L   TGQ TVPNVFIGGKHIGGC   V+ H+ G+L
Sbjct:   61 DSVKRTLADNPVVIYSKSWCSYSMEVKALFKRIGVQPHVIELDQLGAQGPQLQKVLERLTGQSTVPNVFIGGKHIGGCTDTVKLHRKGEL 150          
BLAST of EY659687 vs. ExPASy Swiss-Prot
Match: GRXC5_ARATH (Glutaredoxin-C5, chloroplastic OS=Arabidopsis thaliana GN=GRXC5 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.037e-17
Identity = 44/87 (50.57%), Postives = 58/87 (66.67%), Query Frame = 1
Query:  100 KEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELD-IESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 357
            ++ V+ N VV++SKT+C YCT VK L K+LG    VVELD +   G ++Q  L   TGQ TVPNVF+ GKHIGGC   V+ ++ G L
Sbjct:   74 RKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDL 160          
BLAST of EY659687 vs. ExPASy Swiss-Prot
Match: GRXC8_ORYSJ (Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 5.273e-17
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 1
Query:  100 KEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFK--VVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 357
            K  V ++ VV+FSK+YC YC R K + K+L    +  VVELD   DG +IQ AL++  G+RTVP VF+ GKH+GG D  VE ++ GKL
Sbjct:   37 KSTVKAHDVVIFSKSYCPYCRRAKAVFKELELKKEPYVVELDQREDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAYESGKL 124          
BLAST of EY659687 vs. ExPASy Swiss-Prot
Match: GLRX2_RAT (Glutaredoxin-2, mitochondrial OS=Rattus norvegicus GN=Glrx2 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 5.273e-17
Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = 1
Query:   40 MGLFQSKISKEELEIALNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 363
            MG   S    +     +N+ +E +S+N VV+FSK+ C YC+  K++   +  ++KVVELD+   GS+ Q AL + TG+RTVP +F+ G  IGG       H+ GKL+P
Sbjct:   34 MGNSTSSFWGKSATTPVNQIQETISNNCVVIFSKSSCSYCSMAKKIFHDMNVNYKVVELDMVEYGSQFQEALYKMTGERTVPRIFVNGIFIGGAADTHRLHKEGKLLP 141          
BLAST of EY659687 vs. ExPASy Swiss-Prot
Match: GLRX2_MOUSE (Glutaredoxin-2, mitochondrial OS=Mus musculus GN=Glrx2 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.273e-17
Identity = 42/108 (38.89%), Postives = 65/108 (60.19%), Query Frame = 1
Query:   40 MGLFQSKISKEELEIALNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 363
            MG   S    +     +N+ +E +S+N VV+FSKT C YC+  K++   +  ++K VELD+   G++ Q AL + TG+RTVP +F+ G+ IGG       H+ GKL+P
Sbjct:   34 MGNSTSSFWGKSTTTPVNQIQETISNNCVVIFSKTSCSYCSMAKKIFHDMNVNYKAVELDMLEYGNQFQDALHKMTGERTVPRIFVNGRFIGGAADTHRLHKEGKLLP 141          
The following BLAST results are available for this feature:
BLAST of EY659687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
GLRX2_PONAB1.639e-1846.53Glutaredoxin-2, mitochondrial OS=Pongo abelii GN=G... [more]
GLRX2_BOVIN4.769e-1846.74Glutaredoxin-2, mitochondrial OS=Bos taurus GN=GLR... [more]
TRXR3_HUMAN6.229e-1839.83Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 ... [more]
GRXC4_ARATH6.229e-1843.69Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 P... [more]
GLRX2_HUMAN6.229e-1845.54Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=G... [more]
GRS10_ORYSJ8.135e-1847.78Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. ... [more]
GRXC5_ARATH4.037e-1750.57Glutaredoxin-C5, chloroplastic OS=Arabidopsis thal... [more]
GRXC8_ORYSJ5.273e-1750.00Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN... [more]
GLRX2_RAT5.273e-1739.81Glutaredoxin-2, mitochondrial OS=Rattus norvegicus... [more]
GLRX2_MOUSE5.273e-1738.89Glutaredoxin-2, mitochondrial OS=Mus musculus GN=G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-A04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659687 ID=EY659687; Name=EY659687; organism=Citrus sinensis; type=EST; length=891bp
TGCGTAGACCCACGCGTCCGAAAACTAAAATCACGTCAAATGGGTTTATT
TCAAAGCAAAATAAGCAAAGAAGAGCTTGAAATCGCGCTTAACAAGGCCA
AGGAAATCGTCTCCTCCAATCCCGTCGTCGTCTTCAGCAAAACCTACTGT
GGTTATTGTACAAGGGTGAAGGAGTTGCTTAAACAGCTTGGAACGAGTTT
CAAAGTCGTAGAATTGGATATTGAAAGTGATGGAAGTAAAATTCAAGCAG
CTCTGGCAGAGTGGACTGGGCAGAGAACCGTACCCAATGTGTTCATTGGG
GGAAAACACATCGGTGGCTGCGACACTGTAGTAGAGAAGCACCAAGGAGG
AAAGCTGGTCCCCCTTCTTCGTGATGCCGGTGCCCTCGCCCTTGCTGACA
AATGATAATTTTGCTCCGTTAAGATCAGAACCACAAGTTCGTGTACATGG
GCTGAAGTGAAGAAATGCAACAATATTAAAGTGACCAATTATATGGTGTG
TAAAAGTAACAATCGATGTCCACTTTATTTGTGTGTGTGTGTGTGTGTTT
TATAGACATTTCTCTGCTTGATTGTAAAGTAAAATGAGAGATATGCATGC
GTTGCTGCTCTCTGTATAAGGAGGGAAGCATTCGACCGGGAAGCGGCTTC
AGAGGTTTGTATTGNTGGTGAGACACCAACTAGCGCCTCTGGTTCATTCA
CATTTTATCGCAACCGGCAACGCTGGCTTTCAAGTCAACTAGCATGCGGT
AGAAAAAGTAAAGTGCATATTTATATATCAGGAAAAGAAAGAGCATGATC
AAATTCTTCTCTGNAGTTNACTTTCTATAACTTTGGAATACATCTCCTTT
CATTGNTTAAAAAAAAAAAAAAAAAAAAGGGCGNCGCTCTA
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