EY659682

Overview
NameEY659682
Unique NameEY659682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig332 contig Csv1_Contig332:238..1151. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659682 vs. ExPASy Swiss-Prot
Match: SC132_CANGA (Protein transport protein SEC13-2 OS=Candida glabrata GN=SEC132 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.430e-26
Identity = 88/282 (31.21%), Postives = 127/282 (45.04%), Query Frame = 1
Query:   13 LAKLSGHKGAVWEVAWAHPKFG-SILASCSFDGTVIIWKE---GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAP--------------------STAPGALXGFW--FS*PSSXALFRWL**YREGVEAVQWN---LEDGLLSSSSNAY*LG*RCCLGSQLGASKIYYCKCIGGWESYYMDCGQGRRSMGR*GVA*LQDPCL*SQLVTDW----NILAVADGNNNVTLWEKTMDGPWPQV 759
            L  L GH+G VW   W HP  G ++LA+C +DG V+IWKE   G   + I  H    H +SVN + WAPHE GL L CGS+DG ISV   +      T  +D AH  GV S+SWAP                    S     L   W       +  +   L  +++ V AV W+   L    ++S SN      +C + +Q  +SK         W+   ++ G+  + +G                   W    N+LAV+D + NVT+W+++ DG W +V
Sbjct:   48 LETLVGHEGPVWYADWCHPSLGENLLATCGYDGKVLIWKESGHGGKMQIIGKHAV--HSASVNCVKWAPHEYGLILLCGSADGKISVVELKDGQIASTKILDNAHKFGVNSISWAPLMKTDSSDDGDETTAVKQFISGGNDNLVKIWKFDDDQETYVVADTLEGHKDAVTAVDWSPTTLLQSYVASVSNDK----QCLVWTQDHSSK------KNDWKKISVNEGKFEQKLGS----------------VSWSLSGNLLAVSDDDKNVTIWKESGDGKWEEV 301          
BLAST of EY659682 vs. ExPASy Swiss-Prot
Match: SEH1_OSMMO (Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.469e-20
Identity = 45/122 (36.89%), Postives = 67/122 (54.92%), Query Frame = 1
Query:   31 HKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPSTA 357
            H G+VW V WAHP+FG +LASCSFD T  +W+E  G SN+       WIK     D ++SV  + +AP  +GL L   S+DG + ++   A    + S+    H +      + +SW PS++
Sbjct:   56 HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSS 175          

HSP 2 Score: 36.1946 bits (82), Expect = 1.469e-20
Identity = 25/94 (26.60%), Postives = 41/94 (43.62%), Query Frame = 2
Query:  431 VKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKV---------LHDFKTPVYRVSWSLTGT 685
            V++++      K      L   TD V D+A+APNLG     +A A++D ++      R+     G                + V+RVSW++T T
Sbjct:  197 VQIYEYVENTRKYAKVETLMTVTDPVHDIAFAPNLGRSFHVLAIATKDVRIFKLIPMRKESSSSGPTKLEVQLQAQFDGHNSQVWRVSWNITST 290          
BLAST of EY659682 vs. ExPASy Swiss-Prot
Match: SEH1_MOUSE (Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.594e-16
Identity = 47/122 (38.52%), Postives = 68/122 (55.74%), Query Frame = 1
Query:   31 HKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVG----VTSVSWAPSTA 357
            H G+VW V WAHP+FG +LASCSFD T  +W+E  G SN+       W+K     D ++SV  + +AP  +GL LA  S+DG + V+   A    + S+    H V      + +SW PS++
Sbjct:   56 HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRVY--EAPDVMNLSQWSLQHEVSCKLCCSCISWNPSSS 175          
BLAST of EY659682 vs. ExPASy Swiss-Prot
Match: SEH1_XENTR (Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.718e-16
Identity = 45/122 (36.89%), Postives = 68/122 (55.74%), Query Frame = 1
Query:   31 HKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPSTA 357
            H G+VW V WAHP+FG +LASCSFD T  +W+E  G SN+       W+K     D ++SV  + +AP  +GL LA  S+DG + ++   A    + S+    H +      + +SW PS++
Sbjct:   56 HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSS 175          
BLAST of EY659682 vs. ExPASy Swiss-Prot
Match: SEH1_PONAB (Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.718e-16
Identity = 45/122 (36.89%), Postives = 68/122 (55.74%), Query Frame = 1
Query:   31 HKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPSTA 357
            H G+VW V WAHP+FG +LASCSFD T  +W+E  G SN+       W+K     D ++SV  + +AP  +GL LA  S+DG + ++   A    + S+    H +      + +SW PS++
Sbjct:   56 HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSS 175          
BLAST of EY659682 vs. ExPASy Swiss-Prot
Match: SEH1_HUMAN (Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 2.718e-16
Identity = 45/122 (36.89%), Postives = 68/122 (55.74%), Query Frame = 1
Query:   31 HKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPSTA 357
            H G+VW V WAHP+FG +LASCSFD T  +W+E  G SN+       W+K     D ++SV  + +AP  +GL LA  S+DG + ++   A    + S+    H +      + +SW PS++
Sbjct:   56 HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSS 175          
BLAST of EY659682 vs. ExPASy Swiss-Prot
Match: SEH1_BOVIN (Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.718e-16
Identity = 45/122 (36.89%), Postives = 68/122 (55.74%), Query Frame = 1
Query:   31 HKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPSTA 357
            H G+VW V WAHP+FG +LASCSFD T  +W+E  G SN+       W+K     D ++SV  + +AP  +GL LA  S+DG + ++   A    + S+    H +      + +SW PS++
Sbjct:   56 HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSS 175          
BLAST of EY659682 vs. ExPASy Swiss-Prot
Match: SEH1B_XENLA (Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.718e-16
Identity = 45/122 (36.89%), Postives = 68/122 (55.74%), Query Frame = 1
Query:   31 HKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPSTA 357
            H G+VW V WAHP+FG +LASCSFD T  +W+E  G SN+       W+K     D ++SV  + +AP  +GL LA  S+DG + ++   A    + S+    H +      + +SW PS++
Sbjct:   56 HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSS 175          
BLAST of EY659682 vs. ExPASy Swiss-Prot
Match: SEH1A_XENLA (Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.718e-16
Identity = 45/122 (36.89%), Postives = 68/122 (55.74%), Query Frame = 1
Query:   31 HKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPSTA 357
            H G+VW V WAHP+FG +LASCSFD T  +W+E  G SN+       W+K     D ++SV  + +AP  +GL LA  S+DG + ++   A    + S+    H +      + +SW PS++
Sbjct:   56 HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSS 175          
BLAST of EY659682 vs. ExPASy Swiss-Prot
Match: SEH1_DANRE (Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 6.056e-16
Identity = 45/122 (36.89%), Postives = 67/122 (54.92%), Query Frame = 1
Query:   31 HKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPSTA 357
            H G+VW V WAHP+FG +LASCSFD T  +W+E  G SN+       WIK     D ++SV  + +AP  +GL L   S+DG + ++   A    + S+    H +      + +SW PS++
Sbjct:   56 HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGQSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIY--EAPDVMNLSQWSLQHEISCKLACSCISWNPSSS 175          
The following BLAST results are available for this feature:
BLAST of EY659682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SC132_CANGA8.430e-2631.21Protein transport protein SEC13-2 OS=Candida glabr... [more]
SEH1_OSMMO1.469e-2036.89Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 S... [more]
SEH1_MOUSE1.594e-1638.52Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=... [more]
SEH1_XENTR2.718e-1636.89Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE... [more]
SEH1_PONAB2.718e-1636.89Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=... [more]
SEH1_HUMAN2.718e-1636.89Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=... [more]
SEH1_BOVIN2.718e-1636.89Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1[more]
SEH1B_XENLA2.718e-1636.89Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE... [more]
SEH1A_XENLA2.718e-1636.89Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE... [more]
SEH1_DANRE6.056e-1636.89Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-H11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659682 ID=EY659682; Name=EY659682; organism=Citrus sinensis; type=EST; length=913bp
CCACGCGTCCGTCTCGCAAAGCTTAGTGGTCATAAAGGTGCTGTTTGGGA
GGTGGCTTGGGCTCACCCAAAATTTGGGTCTATACTTGCATCCTGTTCTT
TTGATGGGACTGTCATAATATGGAAGGAGGGTAACAGTAATGAGTGGATC
AAAGATCATGTTTTTGAGGACCACAAATCGTCAGTCAATTCGATTGATTG
GGCGCCTCATGAGCTCGGTCTATGTTTGGCTTGTGGTTCGTCAGATGGGA
ACATATCAGTTTTTACGGCTAGAGCTGATGGCGGCTGGGATACATCTCGG
ATTGACCAAGCTCATCCGGTTGGTGTGACTTCAGTTTCATGGGCCCCATC
AACAGCTCCCGGTGCACTTNGTGGGTTCTGGTTTTCTTGACCCAGTTCAN
AAGCTTTGTTCAGGTGGTTGTGATAATACCGTGAAGGTGTGGAAGCTGTA
CAATGGAATTTGGAAGATGGACTGCTTTCCAGCTCTTCAAATGCATACTG
ATTGGGTTAGAGATGTTGCTTGGGCTCCCAACTTGGGGCTTCCAAAATCT
ACTATTGCAAGTGCATCGGAGGATGGGAAAGTTATTATATGGACTGTGGC
CAGGGAAGGAGATCAATGGGAAGGTAAGGTGTTGCATGACTTCAAGACCC
CTGTTTATAGAGTCAGCTGGTCACTGACTGGAACATATTGGCTGTGGCTG
ATGGAAACAACAATGTAACACTGTGGGAAAAAACAATGGATGGGCCATGG
CCACAGGTGACTGCAGTTGGGCCGTAAGACTCTTTTAAGTTTTCAATTTT
TTATCATGAAATAACAGATTGCATTTAAGACCTCTTTATAATTTCTTTTT
GAGACCCTAAACCGGAATCCCACTCNTTTTATGTACTGCATAGCTGACAT
CTTTGATGAAAAT
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