EY659671

Overview
NameEY659671
Unique NameEY659671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1972 contig Csv1_Contig1972:218..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659671 vs. ExPASy Swiss-Prot
Match: KHDR2_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Rattus norvegicus GN=Khdrbs2 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.496e-20
Identity = 75/230 (32.61%), Postives = 113/230 (49.13%), Query Frame = 3
Query:   21 KYLADLLAERQKLGP-FVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPEDIINXRLDHAVAILENLLKPVDESLDHYKKQQLRGLAMLN 701
            KYL +L+AE+  L P FV      SRLL++EI +  G                       +GR  D         EE  +L                   + +   +K   R+ +PV +YP FNFVG++LGPRGNSLKR++  T  ++ I G+GS++D  KEE+L+   +  Y HL++ LHVL+E   P      R+ HA+  ++  L P  +  D  +++QLR L+ LN
Sbjct:    5 KYLPELMAEKDSLDPSFVHA----SRLLAEEIEKFQG----------------------SDGRKED---------EEKKYLD------------------VISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLN 179          
BLAST of EY659671 vs. ExPASy Swiss-Prot
Match: KHDR2_XENTR (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Xenopus tropicalis GN=khdrbs2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.954e-20
Identity = 53/124 (42.74%), Postives = 82/124 (66.13%), Query Frame = 3
Query:  336 VKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPEDIINXRLDHAVAILENLLKPVDESLDHYKKQQLRGLAMLN 701
            +K   R+ +PV +YP FNFVG++LGPRGNSLKR++  T  ++ I G+GS++D IKEE+L+  D+  + HL++ LHVL+E   P      R+ HA+  ++  L P  +  D  +++QLR L+ LN
Sbjct:   58 IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKIKEEELRKSDEAKHAHLSDELHVLLEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLN 179          
BLAST of EY659671 vs. ExPASy Swiss-Prot
Match: KHDR2_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Mus musculus GN=Khdrbs2 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.334e-20
Identity = 74/230 (32.17%), Postives = 113/230 (49.13%), Query Frame = 3
Query:   21 KYLADLLAERQKLGP-FVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPEDIINXRLDHAVAILENLLKPVDESLDHYKKQQLRGLAMLN 701
            KYL +L+AE+  L P FV      SRLL++EI +  G                       +G+  D         EE  +L                   + +   +K   R+ +PV +YP FNFVG++LGPRGNSLKR++  T  ++ I G+GS++D  KEE+L+   +  Y HL++ LHVL+E   P      R+ HA+  ++  L P  +  D  +++QLR L+ LN
Sbjct:    5 KYLPELMAEKDSLDPSFVHA----SRLLAEEIEKFQG----------------------SDGKKED---------EEKKYLD------------------VISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLN 179          
BLAST of EY659671 vs. ExPASy Swiss-Prot
Match: KHDR2_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Homo sapiens GN=KHDRBS2 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.334e-20
Identity = 74/230 (32.17%), Postives = 113/230 (49.13%), Query Frame = 3
Query:   21 KYLADLLAERQKLGP-FVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPEDIINXRLDHAVAILENLLKPVDESLDHYKKQQLRGLAMLN 701
            KYL +L+AE+  L P FV      SRLL++EI +  G                       +G+  D         EE  +L                   + +   +K   R+ +PV +YP FNFVG++LGPRGNSLKR++  T  ++ I G+GS++D  KEE+L+   +  Y HL++ LHVL+E   P      R+ HA+  ++  L P  +  D  +++QLR L+ LN
Sbjct:    5 KYLPELMAEKDSLDPSFVHA----SRLLAEEIEKFQG----------------------SDGKKED---------EEKKYLD------------------VISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLN 179          
BLAST of EY659671 vs. ExPASy Swiss-Prot
Match: KHDR2_DANRE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Danio rerio GN=khdrbs2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.686e-19
Identity = 51/124 (41.13%), Postives = 79/124 (63.71%), Query Frame = 3
Query:  336 VKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPEDIINXRLDHAVAILENLLKPVDESLDHYKKQQLRGLAMLN 701
            +K   R+ +PV +YP FNFVG++LGPRGNS+KR++  T  ++ I G+GS++D  KEE+L+   +  Y HL+  LHVL+E   P      R+ HA+  ++  L P  +  D  +++QLR L+ LN
Sbjct:   58 IKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLN 179          
BLAST of EY659671 vs. ExPASy Swiss-Prot
Match: KHDR3_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Rattus norvegicus GN=Khdrbs3 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.951e-18
Identity = 49/116 (42.24%), Postives = 74/116 (63.79%), Query Frame = 3
Query:  360 VPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPEDIINXRLDHAVAILENLLKPVDESLDHYKKQQLRGLAMLN 701
            +PV ++P FNFVG++LGPRGNSLKR++  T  ++ I G+GS++D  KEE+L+   +  Y HLN+ LHVL+E   P      R+ HA+  ++  L P  +  D  ++ QL+ L  LN
Sbjct:   62 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEDIKKFLIP--DYNDEIRQAQLQELTYLN 175          
BLAST of EY659671 vs. ExPASy Swiss-Prot
Match: KHDR3_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Mus musculus GN=Khdrbs3 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.951e-18
Identity = 49/116 (42.24%), Postives = 74/116 (63.79%), Query Frame = 3
Query:  360 VPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPEDIINXRLDHAVAILENLLKPVDESLDHYKKQQLRGLAMLN 701
            +PV ++P FNFVG++LGPRGNSLKR++  T  ++ I G+GS++D  KEE+L+   +  Y HLN+ LHVL+E   P      R+ HA+  ++  L P  +  D  ++ QL+ L  LN
Sbjct:   62 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLN 175          
BLAST of EY659671 vs. ExPASy Swiss-Prot
Match: KHDR3_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Homo sapiens GN=KHDRBS3 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.951e-18
Identity = 49/116 (42.24%), Postives = 74/116 (63.79%), Query Frame = 3
Query:  360 VPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPEDIINXRLDHAVAILENLLKPVDESLDHYKKQQLRGLAMLN 701
            +PV ++P FNFVG++LGPRGNSLKR++  T  ++ I G+GS++D  KEE+L+   +  Y HLN+ LHVL+E   P      R+ HA+  ++  L P  +  D  ++ QL+ L  LN
Sbjct:   62 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLN 175          
BLAST of EY659671 vs. ExPASy Swiss-Prot
Match: BBP_DICDI (Branchpoint-bridging protein OS=Dictyostelium discoideum GN=sf1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.549e-17
Identity = 69/221 (31.22%), Postives = 110/221 (49.77%), Query Frame = 3
Query:   72 QVLPLCSRLLSQEIRRITGYNP-SFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGH-----LQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINXRLDHAVAILENLLKPVDESLDHYKKQQLRGLAMLNRTLTE 716
            Q+  L  RL   EI +     P  F + +R    SP  +      R    E     + ++  H      Q++ P   PPS  +Q        P  K+  ++ +P+  +P +NF+G I+GPRGN+ KR+E  +  ++ IRG+GS +D  K  KL+ +      N+ LHVL+ A+  +     +LD A  ++   L PV+E  + +K+QQLR LA +N TL E
Sbjct:   91 QIAALILRLRVDEITKKITIGPIEFTERDRERSPSPPPTYDNNGKRSNTREQRIKEKLQKERHQLVVTAQQINPTYKPPS-DYQ-------PPNEKKTRKIYIPIKNHPEYNFIGLIIGPRGNTQKRMEKESGAKIAIRGKGSSRDG-KPTKLQFQE-----NDELHVLLTADTVD-----QLDKAEVLVREFLIPVEEGKNEHKRQQLRELAEMNGTLRE 292          
BLAST of EY659671 vs. ExPASy Swiss-Prot
Match: KHDR1_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Rattus norvegicus GN=Khdrbs1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.311e-16
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 3
Query:  351 RLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPEDIINXRLDHAVAILENLLKPVDESLDHYKKQQLRGLAMLN 701
            R+ +PV +YP FNFVG+ILGP+GN++KR++  T  ++ + G+GS++D  KEE+L+    P Y HLN  LHV +E   P       + HA+  ++  L P  + +D   ++Q   L+ LN
Sbjct:  159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLN 275          
The following BLAST results are available for this feature:
BLAST of EY659671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
KHDR2_RAT1.496e-2032.61KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_XENTR1.954e-2042.74KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_MOUSE3.334e-2032.17KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_HUMAN3.334e-2032.17KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_DANRE3.686e-1941.13KH domain-containing, RNA-binding, signal transduc... [more]
KHDR3_RAT6.951e-1842.24KH domain-containing, RNA-binding, signal transduc... [more]
KHDR3_MOUSE6.951e-1842.24KH domain-containing, RNA-binding, signal transduc... [more]
KHDR3_HUMAN6.951e-1842.24KH domain-containing, RNA-binding, signal transduc... [more]
BBP_DICDI1.549e-1731.22Branchpoint-bridging protein OS=Dictyostelium disc... [more]
KHDR1_RAT1.311e-1638.66KH domain-containing, RNA-binding, signal transduc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659671 ID=EY659671; Name=EY659671; organism=Citrus sinensis; type=EST; length=809bp
CTTTGCCTTTTAGATCGTGAAAGTATTTGGCTGACTTATTGGCAGAAAGG
CAAAAGTTAGGACCATTTGTCCAAGTTTTGCCTCTATGCAGCAGGCTTCT
CAGTCAAGAAATCAGACGAATAACGGGTTACAATCCAAGTTTTGTTGATC
ATGAAAGGTTTGAGCATGATAGCCCATTTAGGTCATTAGGTCAGCCAAAT
GGAAGACCAATGGATTTGGAGGGTTTGTCTGCAATGCAAACTGAGGAAAA
TGGGCACCTTCAAAGAATGGCCCCTTTTCAAACTCCTCCTTCAATGGGCT
GGCAAGGTATTCCTGGAATTCCAACCACACCTGTTGTAAAGAGAGTTATT
AGACTTGATGTTCCTGTGGATAAATATCCAAATTTTAATTTTGTCGGCCG
GATTTTGGGACCGCGTGGGAACTCGCTCAAAAGAGTCGAAGCCATGACAG
AATGTAGGGTGTTCATTAGAGGCCGGGGTTCAGTCAAGGATTCAATAAAG
GAAGAAAAACTTAAAGATAAACCTGGATATGAGCATCTTAATGAGCCACT
GCACGTGTTAGTGGAGGCCGAATTTCCAGAGGATATAATAAATTNCCGCT
TGGATCATGCTGTAGCAATACTAGAGAACCTTTTGAAGCCCGTGGATGAA
TCCTTGGATCATTACAAGAAGCAACAACTGCGGGGATTAGCTATGCTGAA
CCGGACTCTAACAGAACACANCCAAGACTGAATCCGAGCCTGACTCCTAA
GCTGGGGGCCCTTAACCATGCTGGAAGAAACGCGGNCAGACCGGAACAAA
CATGNNATC
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