EY659671

Overview
NameEY659671
Unique NameEY659671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1972 contig Csv1_Contig1972:218..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659671 vs. ExPASy Swiss-Prot
Match: KHDR1_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Mus musculus GN=Khdrbs1 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.311e-16
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 3
Query:  351 RLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPEDIINXRLDHAVAILENLLKPVDESLDHYKKQQLRGLAMLN 701
            R+ +PV +YP FNFVG+ILGP+GN++KR++  T  ++ + G+GS++D  KEE+L+    P Y HLN  LHV +E   P       + HA+  ++  L P  + +D   ++Q   L+ LN
Sbjct:  159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLN 275          
BLAST of EY659671 vs. ExPASy Swiss-Prot
Match: KHDR1_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Homo sapiens GN=KHDRBS1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.311e-16
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 3
Query:  351 RLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPEDIINXRLDHAVAILENLLKPVDESLDHYKKQQLRGLAMLN 701
            R+ +PV +YP FNFVG+ILGP+GN++KR++  T  ++ + G+GS++D  KEE+L+    P Y HLN  LHV +E   P       + HA+  ++  L P  + +D   ++Q   L+ LN
Sbjct:  159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLN 275          
BLAST of EY659671 vs. ExPASy Swiss-Prot
Match: KHDR1_CHICK (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Gallus gallus GN=KHDRBS1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.311e-16
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 3
Query:  351 RLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPEDIINXRLDHAVAILENLLKPVDESLDHYKKQQLRGLAMLN 701
            R+ +PV +YP FNFVG+ILGP+GN++KR++  T  ++ + G+GS++D  KEE+L+    P Y HLN  LHV +E   P       + HA+  ++  L P  + +D   ++Q   L+ LN
Sbjct:  142 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLN 258          
BLAST of EY659671 vs. ExPASy Swiss-Prot
Match: BBP_ASHGO (Branchpoint-bridging protein OS=Ashbya gossypii GN=BBP PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.814e-16
Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 3
Query:  360 VPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKP-GYEHLNEPLHVLVEAEFPEDIINXRLDHAVAILENLLKPVDESLDHYKKQQLRGLAMLNRTLTE 716
            +P++ YP  NFVG +LGPRGN+LK+++  + C++ IRGRGSVK+    +   D P G  ++NEPLH ++ A+  E I          I++ +  P  E  + +K+ QLR LA+LN TL E
Sbjct:  155 IPINDYPEINFVGLLLGPRGNTLKQLQQQSGCKIVIRGRGSVKEG---KAATDLPKGAMNMNEPLHCVISADTEEKIPLGINAGESIIIKAITFP--EGQNDFKRGQLRELAVLNGTLRE 269          
BLAST of EY659671 vs. ExPASy Swiss-Prot
Match: SF01_HUMAN (Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4)

HSP 1 Score: 82.8037 bits (203), Expect = 2.472e-15
Identity = 54/135 (40.00%), Postives = 74/135 (54.81%), Query Frame = 3
Query:  321 PTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINXRLDHAVAILENLLK---PVDESLDHYKKQQLRGLAMLNRTLTE 716
            P T V  +V+   +P D+YP  NFVG ++GPRGN+LK +E     ++ IRG+GSVK+   +   KD       +EPLH LV A   E++       AV  + N+LK      E  +  +K QLR LA LN TL E
Sbjct:  132 PATRVSDKVM---IPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEG--KVGRKDGQMLPGEDEPLHALVTANTMENV-----KKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLRE 256          
BLAST of EY659671 vs. ExPASy Swiss-Prot
Match: BBP_YEAST (Branchpoint-bridging protein OS=Saccharomyces cerevisiae GN=MSL5 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.229e-15
Identity = 47/122 (38.52%), Postives = 74/122 (60.66%), Query Frame = 3
Query:  360 VPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINXRLDHAVAILENL-LKPV--DESLDHYKKQQLRGLAMLNRTLTE 716
            +PVD+YP+ NFVG +LGPRG +L++++  + C++ IRGRGSVK+      L   PG  +  +PLH L+ A+  +     ++   + + +N+ +K V   E  +  K+ QLR LA LN TL E
Sbjct:  154 IPVDQYPDVNFVGLLLGPRGRTLRKLQEDSNCKIAIRGRGSVKEGKNASDL--PPGAMNFEDPLHCLIIADSED-----KIQKGIKVCQNIVIKAVTSPEGQNDLKRGQLRELAELNGTLRE 268          
BLAST of EY659671 vs. ExPASy Swiss-Prot
Match: SF01_MOUSE (Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=5)

HSP 1 Score: 81.2629 bits (199), Expect = 7.193e-15
Identity = 53/135 (39.26%), Postives = 74/135 (54.81%), Query Frame = 3
Query:  321 PTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINXRLDHAVAILENLLK---PVDESLDHYKKQQLRGLAMLNRTLTE 716
            P T V  +V+   +P D+YP  NFVG ++GPRGN+LK +E     ++ IRG+GSV++   +   KD       +EPLH LV A   E++       AV  + N+LK      E  +  +K QLR LA LN TL E
Sbjct:  132 PATRVSDKVM---IPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVEEG--KVGRKDGQMLPGEDEPLHALVTANTMENV-----KKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLRE 256          
BLAST of EY659671 vs. ExPASy Swiss-Prot
Match: BBP_SCHPO (Branchpoint-bridging protein OS=Schizosaccharomyces pombe GN=bpb1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.193e-15
Identity = 51/123 (41.46%), Postives = 75/123 (60.98%), Query Frame = 3
Query:  360 VPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYE-HLNEPLHVLVEAEFPEDIINXRLDHAVAILENLLK---PVDESLDHYKKQQLRGLAMLNRTLTE 716
            VPV  YP  NF+G ++GPRG++LK +EA +  ++ IRG+GSV    KE K +  P    ++ E LH LV A+  ED IN    HA+ +++N+++    V E  +  K+ QLR LA LN TL +
Sbjct:  192 VPVKDYPEINFIGLLIGPRGHTLKDMEAKSGAKIAIRGKGSV----KEGKGRSDPSVRGNMEEDLHCLVTAD-SEDKIN----HAIKLIDNVIQTAASVPEGQNDLKRNQLRQLATLNGTLRD 305          
BLAST of EY659671 vs. ExPASy Swiss-Prot
Match: BBP_CANGA (Branchpoint-bridging protein OS=Candida glabrata GN=BBP PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.193e-15
Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = 3
Query:  360 VPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINXRLDHAVAILENLLKPVDESLDHYKKQQLRGLAMLNRTLTE 716
            +PV +YP  NFVG +LGPRG +L++++  + C++ IRGRGSVK+      L   PG    ++PLH L+ A+  E I N        +++ +  P  E  +  K+ QLR LA LN TL E
Sbjct:  140 IPVSQYPQINFVGLLLGPRGKTLRKMQEDSGCKIAIRGRGSVKEGKTSSDL--PPGAMDFSDPLHCLIIADNEEKIENGIKACRNIVIKAVTSP--EGQNELKRGQLRELAELNGTLRE 254          
BLAST of EY659671 vs. ExPASy Swiss-Prot
Match: BBP_CANAL (Branchpoint-bridging protein OS=Candida albicans GN=BBP PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.602e-14
Identity = 45/129 (34.88%), Postives = 75/129 (58.14%), Query Frame = 3
Query:  339 KRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINXRLDHAVAILENLLKPV---DESLDHYKKQQLRGLAMLNRTLTE 716
            + V RL VPV  YP+ NFVG ++GPRGN+LK+++  +  R+ IRG+GSVK+    +          + + LHVL+ A+ P      ++  AV ++  ++  +    + ++  K+ QL+ LA+LN TL E
Sbjct:  147 RTVERLYVPVKDYPDINFVGFLIGPRGNTLKKLQEDSGARLQIRGKGSVKEGKSSDGFGSSQTGTDIQDDLHVLITADSP-----LKISKAVKLVNEIIDKLIFSPQGMNFMKRDQLKELAVLNGTLRE 270          
The following BLAST results are available for this feature:
BLAST of EY659671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
KHDR1_MOUSE1.311e-1638.66KH domain-containing, RNA-binding, signal transduc... [more]
KHDR1_HUMAN1.311e-1638.66KH domain-containing, RNA-binding, signal transduc... [more]
KHDR1_CHICK1.311e-1638.66KH domain-containing, RNA-binding, signal transduc... [more]
BBP_ASHGO3.814e-1640.83Branchpoint-bridging protein OS=Ashbya gossypii GN... [more]
SF01_HUMAN2.472e-1540.00Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4[more]
BBP_YEAST3.229e-1538.52Branchpoint-bridging protein OS=Saccharomyces cere... [more]
SF01_MOUSE7.193e-1539.26Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=5[more]
BBP_SCHPO7.193e-1541.46Branchpoint-bridging protein OS=Schizosaccharomyce... [more]
BBP_CANGA7.193e-1539.50Branchpoint-bridging protein OS=Candida glabrata G... [more]
BBP_CANAL1.602e-1434.88Branchpoint-bridging protein OS=Candida albicans G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659671 ID=EY659671; Name=EY659671; organism=Citrus sinensis; type=EST; length=809bp
CTTTGCCTTTTAGATCGTGAAAGTATTTGGCTGACTTATTGGCAGAAAGG
CAAAAGTTAGGACCATTTGTCCAAGTTTTGCCTCTATGCAGCAGGCTTCT
CAGTCAAGAAATCAGACGAATAACGGGTTACAATCCAAGTTTTGTTGATC
ATGAAAGGTTTGAGCATGATAGCCCATTTAGGTCATTAGGTCAGCCAAAT
GGAAGACCAATGGATTTGGAGGGTTTGTCTGCAATGCAAACTGAGGAAAA
TGGGCACCTTCAAAGAATGGCCCCTTTTCAAACTCCTCCTTCAATGGGCT
GGCAAGGTATTCCTGGAATTCCAACCACACCTGTTGTAAAGAGAGTTATT
AGACTTGATGTTCCTGTGGATAAATATCCAAATTTTAATTTTGTCGGCCG
GATTTTGGGACCGCGTGGGAACTCGCTCAAAAGAGTCGAAGCCATGACAG
AATGTAGGGTGTTCATTAGAGGCCGGGGTTCAGTCAAGGATTCAATAAAG
GAAGAAAAACTTAAAGATAAACCTGGATATGAGCATCTTAATGAGCCACT
GCACGTGTTAGTGGAGGCCGAATTTCCAGAGGATATAATAAATTNCCGCT
TGGATCATGCTGTAGCAATACTAGAGAACCTTTTGAAGCCCGTGGATGAA
TCCTTGGATCATTACAAGAAGCAACAACTGCGGGGATTAGCTATGCTGAA
CCGGACTCTAACAGAACACANCCAAGACTGAATCCGAGCCTGACTCCTAA
GCTGGGGGCCCTTAACCATGCTGGAAGAAACGCGGNCAGACCGGAACAAA
CATGNNATC
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