EY659660

Overview
NameEY659660
Unique NameEY659660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659660 vs. ExPASy Swiss-Prot
Match: TBA4_DROME (Tubulin alpha-4 chain OS=Drosophila melanogaster GN=alphaTub67C PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.896e-50
Identity = 96/256 (37.50%), Postives = 149/256 (58.20%), Query Frame = 2
Query:   38 VFGQNGAGNTWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQXMWDSKNMMCAADPRHGRYLTAXAMFRGKMSTKGVDEHMINVQNKNSSYFVEWNP 805
            + G+  A N +A+G Y+ G E+ID V   ++K AE CD LQGF I H              + ++  +Y  +  + F+V+PSPKVS  VVEPYNA L+ H  ++++D   ++DNEA+YDIC  +L +  P++ +LN LI+  +S  T  LRF G +N DL +   NL+PFPR+HF +V +APL +     +    I  LT   ++S NMM   DPR G+++    ++RG +  K V+  +  +++K    FV+W P
Sbjct:  104 ISGKEDAANNYARGRYSIGKEVIDRVTSRLQKIAEQCDSLQGFLIFHSLGGGTGSGFTSLLVERLSTDYSKKCKLDFAVYPSPKVSTAVVEPYNALLTTHSTMDHSDCVFMVDNEAIYDICNNSLGVDRPAYRNLNRLIAQIVSSTTASLRFSGSMNVDLNEFQTNLVPFPRIHFPLVAYAPLMSAERSAHEQHAITTLTNACFESSNMMVKCDPRAGKFMACCMLYRGDVVPKDVNAAVSAIKSKRHIQFVDWCP 359          
BLAST of EY659660 vs. ExPASy Swiss-Prot
Match: TBAB_SCHCO (Tubulin alpha-1B chain OS=Schizophyllum commune GN=TUB-1B PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 8.425e-50
Identity = 91/256 (35.55%), Postives = 150/256 (58.59%), Query Frame = 2
Query:   38 VFGQNGAGNTWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQXMWDSKNMMCAADPRHGRYLTAXAMFRGKMSTKGVDEHMINVQNKNSSYFVEWNP 805
            + G+  A N +A+GHYT G ELID V+D +R+ A+NC   QG  + H              + ++  +Y  +  + F V+P+P++S +VVEPYN+ L+ H  +E++D   ++DNEA+YDIC + L +  P F +LN LI+  +S +T  LRF G LN DL +   NL+PFPR+HF +  +APL +   +Q+   ++ E+T   ++S N M   D + G+Y+    ++RG +  K     + +++ K +  FV+W P
Sbjct:   91 ITGKEDAANNYARGHYTVGKELIDPVMDKLRRLADNCSGRQGLFVFHSFGGGTGSGFGALLLERLSTDYGKKAKLEFCVYPAPQLSSSVVEPYNSLLTTHTTLEHSDCSFMVDNEAIYDICKKNLGVAQPGFTNLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNLVPFPRIHFPLASYAPLLSAPRRQHEQNSVEEMTFSCFESGNQMVKCDAKDGKYMACCLLYRGDVVPKDTQAAVASIKTKRTIQFVDWCP 346          
BLAST of EY659660 vs. ExPASy Swiss-Prot
Match: TBAL3_MOUSE (Tubulin alpha chain-like 3 OS=Mus musculus GN=Tubal3 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 4.181e-49
Identity = 95/256 (37.11%), Postives = 149/256 (58.20%), Query Frame = 2
Query:   38 VFGQNGAGNTWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQXMWDSKNMMCAADPRHGRYLTAXAMFRGKMSTKGVDEHMINVQNKNSSYFVEWNP 805
            V G+  A NT+A+G Y+ G+E+I+ VL+ +RK AE C  LQGF I                + ++  EY  ++ + FSV+PSP++S  VVEPYNA L+ H  +E +D   ++DNEALYDIC   L +  PS+  +N LI+   S +T  LRF G LN DL +   NL+P+PR+HF +   AP+ +        L++ ++T   ++  N +   DPR G+Y+    ++RG +  K V+E +  ++++ S  FV+W P
Sbjct:  100 VNGKEDAANTYARGRYSVGSEVIELVLERIRKLAEQCSGLQGFLIYRSFGGGTGSGFTSLLMERLSVEYCKKIKLEFSVYPSPRISTAVVEPYNAILTTHSTIEYSDCAFMVDNEALYDICQHKLGIGRPSYASINRLIAQVSSSITASLRFEGPLNVDLIEFQTNLVPYPRIHFPITALAPIISAEKAYQEQLSVSDVTASCFEVSNQLVKCDPRLGKYMACCLLYRGDVVPKDVNEAIAAMKSRTSVQFVDWCP 355          
BLAST of EY659660 vs. ExPASy Swiss-Prot
Match: TBAA_SCHCO (Tubulin alpha-1A chain OS=Schizophyllum commune GN=TUB-1A PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 5.461e-49
Identity = 91/268 (33.96%), Postives = 152/268 (56.72%), Query Frame = 2
Query:   38 VFGQNGAGNTWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQXMWDSKNMMCAADPRHGRYLTAXAMFRGKMSTKGVDEHMINVQNKNSSYFVEWNPPYVNSRVWDIPP 841
            + G+  A + +A+GHYT G E ID V+D VR+  +NC+ LQGF + H              + ++  +Y  +  + FSV+P+P ++ +VVEPYN+ L+ H  +E++D   ++DNEA+YDIC + L +  P   +LN LI+  +S +T  LRF G LN DL +   NL+PFPR+HF +   AP+ +     + + ++ E+T   ++  N M   DPR G+Y+    ++RG +  K  +  +  ++ K +  FV+W P      + + PP
Sbjct:   92 ITGKEDAASNYARGHYTIGKEQIDVVMDKVRRLVDNCNGLQGFFVFHSFGGGTGSGFGALILERLSTDYGKKSKLEFSVYPAPTLASSVVEPYNSVLTTHTTLEHSDCSFMVDNEAIYDICKKNLNIAQPGLTNLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNLVPFPRIHFPLATLAPIVSVDKAGHESNSVAEMTYSCFEPGNQMVKCDPRDGKYMACALLYRGDVVPKDTNAAVALIKTKRTIQFVDWCPTGFKLGICNEPP 359          
BLAST of EY659660 vs. ExPASy Swiss-Prot
Match: TBAL3_HUMAN (Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBAL3 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 2.075e-48
Identity = 94/266 (35.34%), Postives = 149/266 (56.02%), Query Frame = 2
Query:   44 GQNGAGNTWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQXMWDSKNMMCAADPRHGRYLTAXAMFRGKMSTKGVDEHMINVQNKNSSYFVEWNPPYVNSRVWDIPP 841
            G+  A N +A+G Y+ G+E+ID VL+  RK AE C  LQGF I                + ++  EY  +  + FSV+P+P++S  VVEPYN+ L+ H   E+ D   ++DNEA+YDIC R L +  PS   +N L+   +S +T  LRF G LN DL +   NL+P+PR+HF M  FAP+ +     +   ++ ++T   ++S N +   DPR G+Y+    ++RG +  K V+  +   ++++S  FV+W P      + + PP
Sbjct:  102 GKEDAANNYARGRYSVGSEVIDLVLERTRKLAEQCGGLQGFLIFRSFGGGTGSGFTSLLMERLTGEYSRKTKLEFSVYPAPRISTAVVEPYNSVLTTHSTTEHTDCTFMVDNEAVYDICHRKLGVECPSHASINRLVVQVVSSITASLRFEGPLNVDLIEFQTNLVPYPRIHFPMTAFAPIVSADKAYHEQFSVSDITTACFESSNQLVKCDPRLGKYMACCLLYRGDVVPKEVNAAIAATKSRHSVQFVDWCPTGFKVGINNRPP 367          
BLAST of EY659660 vs. ExPASy Swiss-Prot
Match: TBA1_STYLE (Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 3.540e-48
Identity = 94/256 (36.72%), Postives = 147/256 (57.42%), Query Frame = 2
Query:   38 VFGQNGAGNTWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQXMWDSKNMMCAADPRHGRYLTAXAMFRGKMSTKGVDEHMINVQNKNSSYFVEWNP 805
            + G+  A N +A+GHYT G E++D  LD +RK A+ C  LQGF + +              + ++  +Y  +  + F+V+PSP+VS  VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R L +  P++ +LN LI+  +S +T  LRF G LN D+ +   NL+P+P      V   P T      +  L++ E+T   ++  +MM   DPRHG+Y+    M+RG +  K V+  +  ++ K +  FV+W P
Sbjct:   93 ISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADQCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAVYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYP-----SVIIRPSTPAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 343          
BLAST of EY659660 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.392e-44
Identity = 87/257 (33.85%), Postives = 146/257 (56.81%), Query Frame = 2
Query:   38 VFGQNGAGNTWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTC-CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQXMWDSKNMMCAADPRHGRYLTAXAMFRGKMSTKGVDEHMINVQNKNSSYFVEWNP 805
            + G+  A N +A+GHYT G E+ID  LD VR+ A+NC  LQGF + H              + ++  +Y  +  + F V+P+P+ + +VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PS+ + N L++   S +T   L F   LN DL +   NL+P+PR+HF +  ++P+ + G   + + ++ E+T   ++  N M   DPR+G+Y+    ++RG +  K V      ++ K +  FV+  P
Sbjct:   93 ITGKEDASNNYARGHYTVGKEMIDQCLDKVRRVADNCSGLQGFLVFHSFGGGQGSGFGALLMERLSVDYGKKTKLEFCVYPAPQNATSVVEPYNSILTTHTTLEHSDVQFMVDNEAIYDICRRNLGIERPSYENSNRLMAQGQSPITAIMLLFDCALNVDLNEFQTNLVPYPRIHFPLASYSPVVSAGKASHESNSVMEVTIVCFEPNNQMVKCDPRNGKYMATCLLYRGDVVPKDVHAVAATLKTKRTVQFVDLQP 349          
BLAST of EY659660 vs. ExPASy Swiss-Prot
Match: TBG2_ORYSJ (Tubulin gamma-2 chain OS=Oryza sativa subsp. japonica GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.625e-43
Identity = 91/258 (35.27%), Postives = 147/258 (56.98%), Query Frame = 2
Query:   53 GAGNTWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTA-RGSQQYRALTIPELTQXMWDSKNMMCAADPRH-----GRYLTAXAMFRGKMSTKGVDEHMINVQNKNSSYFVEWNP 805
            GAGN WA G Y +G +++D ++D++ +EA+  D L+GF +CH              +  + + Y  +++ T+SVFP+  + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L L NP+F   N L+ST MS  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT  R     R  T+ ++ + +  +KN+M ++  R+      +Y++   + +G++    V E +  ++ +    F+EW P
Sbjct:   99 GAGNNWASG-YHQGEQVVDDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLANPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGP 355          
BLAST of EY659660 vs. ExPASy Swiss-Prot
Match: TBA4_CHICK (Tubulin alpha-4 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.428e-43
Identity = 83/235 (35.32%), Postives = 135/235 (57.45%), Query Frame = 2
Query:  137 AENCDCLQGFQICHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQXMWDSKNMMCAADPRHGRYLTAXAMFRGKMSTKGVDEHMINVQNKNSSYFVEWNPPYVNSRVWDIPP 841
            A+ C  LQGF I H              + ++  +Y  +  + F+++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P++ +LN LIS  +S +T  LRF G LN DL +   NL+P+PR+HF +V +AP+ +     +  L++ E+T   ++  N M   DPRHG+Y+    ++RG +  K V+  +  ++ K +  FV+W P  V   +   PP
Sbjct:    1 ADACSGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICCRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISSERAYHEQLSVAEITSSCFEPNNQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRNIQFVDWCPTGVKVGINYQPP 235          
BLAST of EY659660 vs. ExPASy Swiss-Prot
Match: TBG2_MAIZE (Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 7.638e-43
Identity = 91/258 (35.27%), Postives = 147/258 (56.98%), Query Frame = 2
Query:   53 GAGNTWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTA-RGSQQYRALTIPELTQXMWDSKNMMCAADPR-----HGRYLTAXAMFRGKMSTKGVDEHMINVQNKNSSYFVEWNP 805
            GAGN WA G Y +G +++D ++D+V +EA+  D L+GF +CH              +  + + Y  +++ T+SVFP+  + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L L+NP+F   N L+ST MS  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT  R     R  T+ ++ + +  +KN+M ++  R       +Y++   + +G++    V E +  ++ +    F++W P
Sbjct:   99 GAGNNWASG-YHQGEQVVDDIMDMVDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNVMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIDWAP 355          
The following BLAST results are available for this feature:
BLAST of EY659660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 424
Match NameE-valueIdentityDescription
TBA4_DROME2.896e-5037.50Tubulin alpha-4 chain OS=Drosophila melanogaster G... [more]
TBAB_SCHCO8.425e-5035.55Tubulin alpha-1B chain OS=Schizophyllum commune GN... [more]
TBAL3_MOUSE4.181e-4937.11Tubulin alpha chain-like 3 OS=Mus musculus GN=Tuba... [more]
TBAA_SCHCO5.461e-4933.96Tubulin alpha-1A chain OS=Schizophyllum commune GN... [more]
TBAL3_HUMAN2.075e-4835.34Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBA... [more]
TBA1_STYLE3.540e-4836.72Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 S... [more]
TBA_AJECA1.392e-4433.85Tubulin alpha chain (Fragment) OS=Ajellomyces caps... [more]
TBG2_ORYSJ2.625e-4335.27Tubulin gamma-2 chain OS=Oryza sativa subsp. japon... [more]
TBA4_CHICK3.428e-4335.32Tubulin alpha-4 chain (Fragment) OS=Gallus gallus ... [more]
TBG2_MAIZE7.638e-4335.27Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-F10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659660 ID=EY659660; Name=EY659660; organism=Citrus sinensis; type=EST; length=922bp
GCCGGNATTCCAAGGCCGACCCACGCGTCCGAATTTTGTTTTTGGCCAAA
ATGGTGCTGGAAACACCTGGGCCAAGGGGCACTACACCGAAGGAGCTGAA
TTGATTGATTCAGTTCTTGATGTTGTTCGTAAAGAAGCTGAGAATTGTGA
CTGCCTACAAGGCTTTCAGATTTGCCACTCACTTGGAGGGGGGACTGGAT
CAGGAATGGGAACTCTACTGATATCAAAGATTAGAGAAGAATATCCTGAT
CGTATGATGATGACCTTTTCCGTTTTCCCATCACCTAAAGTCTCTGACAC
AGTTGTTGAGCCTTACAACGCCACACTCTCTGTGCACCAGCTTGTTGAAA
ATGCCGATGAGTGTATGGTCCTTGACAATGAAGCTCTCTACGATATCTGC
TTTCGAACTCTCAAGCTCACAAATCCCAGCTTTGGTGATCTGAACCATTT
GATCTCAACAACAATGAGTGGAGTAACATGCTGCCTTCGTTTCCCCGGCC
AACTCAACTCTGATCTTCGGAAATTAGCCGTAAACTTGATCCCATTCCCA
CGCCTGCACTTTTTCATGGTTGGTTTTGCGCCCTTAACAGCTCGCGGGTC
ACAGCAGTACCGCGCTCTGACAATTCCTGAGCTTACTCAACANATGTGGG
ATTCTAAAAACATGATGTGCGCTGCTGATCCTCGCCATGGTAGGTATTTG
ACTGCCTNCGCAATGTTCCGAGGCAAAATGAGTACAAAGGGAGTTGACGA
ACATATGATCAATGTACAAAACAAGAATTCTTCATACTTTGTTGAGTGGA
ATCCGCCATATGTTAACTCAAGGGTTTGGGACATTCCCCCACTGGGGTAT
CAATGTCGGCAACGTTTATTGGGGATTCTACCTCCATCCAAGAAAAGTTC
AGGCGTGGTTCAGAACAATTCC
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