EY659660

Overview
NameEY659660
Unique NameEY659660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659660 vs. ExPASy Swiss-Prot
Match: TBD_CANFA (Tubulin delta chain OS=Canis familiaris GN=TUBD1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.773e-15
Identity = 48/201 (23.88%), Postives = 92/201 (45.77%), Query Frame = 2
Query:   47 QNGAGNTWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGV---------TCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALT 622
            + G+GN WA G+   G    +S++++++KE E CD L GF I                   ++++Y + + M   ++P     + +V+ YN+ L++  L  ++D  +V +N+A++ IC + + +   SF D+N +++  +  V         +C  R      + L  L  NL+P P      +   P  +  S  Y   T
Sbjct:   97 KEGSGNNWAYGYSVHGPRHEESIMNLIQKEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQNLQDQYSNSLKMNQIIWPY-GTGEVIVQNYNSVLTLSHLYRSSDALLVHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSVEGSCHYR-----RNPLGDLMENLVPHPEFKMLGIRNIPQMSENSLTYSTFT 291          
BLAST of EY659660 vs. ExPASy Swiss-Prot
Match: TBD_MOUSE (Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.501e-14
Identity = 49/201 (24.38%), Postives = 92/201 (45.77%), Query Frame = 2
Query:   47 QNGAGNTWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSD---------LRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALT 622
            + G+GN WA G+   G +  +S++++++ E E CD L GF I                  K++++Y   + M   ++P     + +V+ YN+ L++  L  ++D  ++ +N+A++ IC + + +   SF DLN +++  +  V     F    + D         L  L  +L+P P      V   P  +  S  Y A T
Sbjct:   97 KQGSGNNWAYGYSVHGPKHEESIMNLIQTEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQKLQDQYSSSLKMNQIIWPYG-TGEVIVQNYNSILTLSHLYRSSDALLIHENDAVHKICAKRMNIKQISFRDLNQVLAHQLGSV-----FQPTYSEDSSFHYRRNPLGDLMEHLVPHPEFKMLGVRNIPQMSAASLAYSAFT 291          
BLAST of EY659660 vs. ExPASy Swiss-Prot
Match: TBD_HUMAN (Tubulin delta chain OS=Homo sapiens GN=TUBD1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.560e-14
Identity = 47/197 (23.86%), Postives = 90/197 (45.69%), Query Frame = 2
Query:   47 QNGAGNTWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGV-----TCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALT 622
            + G+GN WA G+   G    +S+++++RKE E CD   GF I                   + ++Y + + M   ++P     + +V+ YN+ L++  L  ++D  ++ +N+A++ IC + + +   SF D+N +++  +  V     +    F  + N  L  L  +L+P P      V   P  +  S  Y   T
Sbjct:   97 KQGSGNNWAYGYSVHGPRHEESIMNIIRKEVEKCDSFSGFFIIMSMAGGTGSGLGAFVTQNLEDQYSNSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLLHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSAESSFHYRRN-PLGDLMEHLVPHPEFKMLSVRNIPHMSENSLAYTTFT 291          
BLAST of EY659660 vs. ExPASy Swiss-Prot
Match: TBD_XENTR (Tubulin delta chain OS=Xenopus tropicalis GN=tubd1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.729e-14
Identity = 38/143 (26.57%), Postives = 73/143 (51.05%), Query Frame = 2
Query:   47 QNGAGNTWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGV 475
            + G GN WA G+   G +  D V+D+VRK+ E CD L GF                     +R+ YPD +++   ++P     + +V+ YN+ L++  L  ++D  +V +N+ ++ +C + + +   SF D+N +I+  +  +
Sbjct:   97 KQGCGNNWANGYCVHGPKHQDIVMDLVRKQVEKCDRLGGFFTIMSMAGGTGSGMGTFLTRCLRDAYPDSLLLNQVIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLVHENDIIHKVCSQLMNIKQISFRDVNKVIAHQLGSI 238          
The following BLAST results are available for this feature:
BLAST of EY659660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 424
Match NameE-valueIdentityDescription
TBD_CANFA1.773e-1523.88Tubulin delta chain OS=Canis familiaris GN=TUBD1 P... [more]
TBD_MOUSE1.501e-1424.38Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 ... [more]
TBD_HUMAN2.560e-1423.86Tubulin delta chain OS=Homo sapiens GN=TUBD1 PE=1 ... [more]
TBD_XENTR9.729e-1426.57Tubulin delta chain OS=Xenopus tropicalis GN=tubd1... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-F10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659660 ID=EY659660; Name=EY659660; organism=Citrus sinensis; type=EST; length=922bp
GCCGGNATTCCAAGGCCGACCCACGCGTCCGAATTTTGTTTTTGGCCAAA
ATGGTGCTGGAAACACCTGGGCCAAGGGGCACTACACCGAAGGAGCTGAA
TTGATTGATTCAGTTCTTGATGTTGTTCGTAAAGAAGCTGAGAATTGTGA
CTGCCTACAAGGCTTTCAGATTTGCCACTCACTTGGAGGGGGGACTGGAT
CAGGAATGGGAACTCTACTGATATCAAAGATTAGAGAAGAATATCCTGAT
CGTATGATGATGACCTTTTCCGTTTTCCCATCACCTAAAGTCTCTGACAC
AGTTGTTGAGCCTTACAACGCCACACTCTCTGTGCACCAGCTTGTTGAAA
ATGCCGATGAGTGTATGGTCCTTGACAATGAAGCTCTCTACGATATCTGC
TTTCGAACTCTCAAGCTCACAAATCCCAGCTTTGGTGATCTGAACCATTT
GATCTCAACAACAATGAGTGGAGTAACATGCTGCCTTCGTTTCCCCGGCC
AACTCAACTCTGATCTTCGGAAATTAGCCGTAAACTTGATCCCATTCCCA
CGCCTGCACTTTTTCATGGTTGGTTTTGCGCCCTTAACAGCTCGCGGGTC
ACAGCAGTACCGCGCTCTGACAATTCCTGAGCTTACTCAACANATGTGGG
ATTCTAAAAACATGATGTGCGCTGCTGATCCTCGCCATGGTAGGTATTTG
ACTGCCTNCGCAATGTTCCGAGGCAAAATGAGTACAAAGGGAGTTGACGA
ACATATGATCAATGTACAAAACAAGAATTCTTCATACTTTGTTGAGTGGA
ATCCGCCATATGTTAACTCAAGGGTTTGGGACATTCCCCCACTGGGGTAT
CAATGTCGGCAACGTTTATTGGGGATTCTACCTCCATCCAAGAAAAGTTC
AGGCGTGGTTCAGAACAATTCC
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