EY659660
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY659660 vs. ExPASy Swiss-Prot
Match: TBD_CANFA (Tubulin delta chain OS=Canis familiaris GN=TUBD1 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.773e-15 Identity = 48/201 (23.88%), Postives = 92/201 (45.77%), Query Frame = 2 Query: 47 QNGAGNTWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGV---------TCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALT 622 + G+GN WA G+ G +S++++++KE E CD L GF I ++++Y + + M ++P + +V+ YN+ L++ L ++D +V +N+A++ IC + + + SF D+N +++ + V +C R + L L NL+P P + P + S Y T Sbjct: 97 KEGSGNNWAYGYSVHGPRHEESIMNLIQKEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQNLQDQYSNSLKMNQIIWPY-GTGEVIVQNYNSVLTLSHLYRSSDALLVHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSVEGSCHYR-----RNPLGDLMENLVPHPEFKMLGIRNIPQMSENSLTYSTFT 291
BLAST of EY659660 vs. ExPASy Swiss-Prot
Match: TBD_MOUSE (Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.501e-14 Identity = 49/201 (24.38%), Postives = 92/201 (45.77%), Query Frame = 2 Query: 47 QNGAGNTWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSD---------LRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALT 622 + G+GN WA G+ G + +S++++++ E E CD L GF I K++++Y + M ++P + +V+ YN+ L++ L ++D ++ +N+A++ IC + + + SF DLN +++ + V F + D L L +L+P P V P + S Y A T Sbjct: 97 KQGSGNNWAYGYSVHGPKHEESIMNLIQTEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQKLQDQYSSSLKMNQIIWPYG-TGEVIVQNYNSILTLSHLYRSSDALLIHENDAVHKICAKRMNIKQISFRDLNQVLAHQLGSV-----FQPTYSEDSSFHYRRNPLGDLMEHLVPHPEFKMLGVRNIPQMSAASLAYSAFT 291
BLAST of EY659660 vs. ExPASy Swiss-Prot
Match: TBD_HUMAN (Tubulin delta chain OS=Homo sapiens GN=TUBD1 PE=1 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 2.560e-14 Identity = 47/197 (23.86%), Postives = 90/197 (45.69%), Query Frame = 2 Query: 47 QNGAGNTWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGV-----TCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALT 622 + G+GN WA G+ G +S+++++RKE E CD GF I + ++Y + + M ++P + +V+ YN+ L++ L ++D ++ +N+A++ IC + + + SF D+N +++ + V + F + N L L +L+P P V P + S Y T Sbjct: 97 KQGSGNNWAYGYSVHGPRHEESIMNIIRKEVEKCDSFSGFFIIMSMAGGTGSGLGAFVTQNLEDQYSNSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLLHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSAESSFHYRRN-PLGDLMEHLVPHPEFKMLSVRNIPHMSENSLAYTTFT 291
BLAST of EY659660 vs. ExPASy Swiss-Prot
Match: TBD_XENTR (Tubulin delta chain OS=Xenopus tropicalis GN=tubd1 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 9.729e-14 Identity = 38/143 (26.57%), Postives = 73/143 (51.05%), Query Frame = 2 Query: 47 QNGAGNTWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGV 475 + G GN WA G+ G + D V+D+VRK+ E CD L GF +R+ YPD +++ ++P + +V+ YN+ L++ L ++D +V +N+ ++ +C + + + SF D+N +I+ + + Sbjct: 97 KQGCGNNWANGYCVHGPKHQDIVMDLVRKQVEKCDRLGGFFTIMSMAGGTGSGMGTFLTRCLRDAYPDSLLLNQVIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLVHENDIIHKVCSQLMNIKQISFRDVNKVIAHQLGSI 238 The following BLAST results are available for this feature:
BLAST of EY659660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 424
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Sequences
The
following sequences are available for this feature:
EST sequence >EY659660 ID=EY659660; Name=EY659660; organism=Citrus sinensis; type=EST; length=922bpback to top |