EY659656

Overview
NameEY659656
Unique NameEY659656
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length923
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659656_ssr88 microsatellite EY659656_ssr88:88..97. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY659656 vs. ExPASy Swiss-Prot
Match: ARR2_ARATH (Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.029e-11
Identity = 46/127 (36.22%), Postives = 64/127 (50.39%), Query Frame = 3 
Query:  252 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA---KDLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN 623
            FP  LRVL++D D +    L+  L    Y V+       ALS        F + I +V   + DG FK LE      DLP I+ S     S ++K +  GAV++L KP+  + L+N+WQHVV K  N
Sbjct:   24 FPANLRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLLRKNKNGFDIVISDVHMPDMDG-FKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRIEALKNIWQHVVRKKRN 149
The following BLAST results are available for this feature:
BLAST of EY659656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ARR2_ARATH2.029e-1136.22Two-component response regulator ARR2 OS=Arabidops... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-F05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659656 ID=EY659656; Name=EY659656; organism=Citrus sinensis; type=EST; length=923bp
TGCAGCTAAAGAGCAAGTGAGAGAAACCTCTTGAGGAAAATACAAGAGCT
TTTCAAGCTTCACCAAACTCAAGAAGGAAAAGAAAAAATATATATATTAA
ACTCTTGTGTACACTTAGCTCATTGTTGCATGTACCAATTGATTTGGATG
ATGATCATAAGCAGTGATCTGCAACAATTGTTTGTGGCCTGAGAAAGGAT
GCCAAACCAGCTATGGTTTGCACTGCTAATGATTTATCAGCATGGAAGGA
TTTTCCAAAGGGCCTCAGGGTCCTCTTACTTGATCAGGACAGCAGTGCGG
CTGCCGAGTTAAAATTCAAGCTTGAAGCTATGGACTACATTGTTTCCACA
TTCTACAATGAGAATGAAGCTCTGTCAGCATTTTCGGACAAACCTGAGAA
CTTCCATGTTGCCATTGTAGAGGTAACCACAAGCAACACTGATGGAAGTT
TTAAGTTTCTTGAAACTGCAAAGGATTTGCCTACTATTATAACTTCAAAT
ATTCATTGCTTGAGCACCATGATGAAGTGCATAGCGCTAGGTGCAGTTGA
ATTCCTCCGGAAACCACTTTCAGAGGATAAACTCAGGAACTTATGGCAGC
ATGTGGTTCATAAGGCATTCAATGCTGGGGGAAGCGCCCTCTCTGATTCA
CTAAAGCCTGTGAAAGAATCCGTGGTTTCCATGCTGCATCTTTAATTGGA
AATGGAGATNCAAGAACGAGAAAGTCGAGATACAGATATGTTTTGGTGCC
TCACAGAGTGACAATGACAGTCAGTACAAATGATAAAATCCTGCTGCCTC
ACTCCCACATTGAACAGGGGAGACGATTACTGAGACATAGATTGCCAGAT
ATACTACTTCTCACTGAAAAGAAAGTGCGGAGCAGATGGAGATCAAATTC
TCGAACTACTTGGGCATTTCATT
back to top