EY659646

Overview
NameEY659646
Unique NameEY659646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1053 contig Csv1_Contig1053:241..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659646 vs. ExPASy Swiss-Prot
Match: NACB_SCHPO (Nascent polypeptide-associated complex subunit beta OS=Schizosaccharomyces pombe GN=btf3 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.898e-14
Identity = 43/110 (39.09%), Postives = 66/110 (60.00%), Query Frame = 1
Query:    1 QKVSEHLEEIGLNAIPAIEEVNIFKDDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 327
            +KV   L+++ +  +  I+EVN+FK+D  VI F  P V +S+   T  + G  + K L +ILPGI+N LGP++L  LR++AEQ +      G  A    + DD E+P+LV
Sbjct:   39 KKVQGALKKLNMQNLAGIQEVNMFKEDGGVINFRAPTVHSSLPNETTAIYGKAEEKTLSEILPGILNNLGPESLTALRQMAEQLKVSEGEKGADA----QADDGEIPDLV 144          
BLAST of EY659646 vs. ExPASy Swiss-Prot
Match: NACB_YARLI (Nascent polypeptide-associated complex subunit beta OS=Yarrowia lipolytica GN=EGD1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.704e-14
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 1
Query:    1 QKVSEHLEEIGLNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF---QKQAPNAGTGAPTTQEDDDDEVPELV 327
            +K+S  L++     I  I EVN+FK+D  V+ F    V+ S+A+NT+ +SG  Q K + +++P I+ Q+G D L  L++ A QF   Q+QA     G    +E  DDE+P LV
Sbjct:   42 KKLSATLKKFNAQEITGISEVNMFKEDGTVLHFPKVHVEGSVASNTFAISGPSQQKDIAELIPDILPQMGQDALLQLQQAAVQFSKLQEQAKKTAGGPDAAKEAGDDEIPNLV 154          
BLAST of EY659646 vs. ExPASy Swiss-Prot
Match: NACB1_YEAST (Nascent polypeptide-associated complex subunit beta-1 OS=Saccharomyces cerevisiae GN=EGD1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.112e-12
Identity = 45/110 (40.91%), Postives = 59/110 (53.64%), Query Frame = 1
Query:    4 KVSEHLEEIGLNAIPAIEEVNIFKDDVVIQFLNPKVQASIAA--NTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 327
            K+   L ++    I  + E N FKDD  +   N KV   +AA  NT V  G PQ K LQD+ PGII+QLGP+ +  L +LA Q +K        AP   E  D+ +PELV
Sbjct:   43 KLQSQLAKLHAVTIDNVAEANFFKDDGKVMHFN-KVGVQVAAQHNTSVFYGLPQEKNLQDLFPGIISQLGPEAIQALSQLAAQMEKHEAK----APADAEKKDEAIPELV 147          
BLAST of EY659646 vs. ExPASy Swiss-Prot
Match: NACB1_YEAS7 (Nascent polypeptide-associated complex subunit beta-1 OS=Saccharomyces cerevisiae (strain YJM789) GN=EGD1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.112e-12
Identity = 45/110 (40.91%), Postives = 59/110 (53.64%), Query Frame = 1
Query:    4 KVSEHLEEIGLNAIPAIEEVNIFKDDVVIQFLNPKVQASIAA--NTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 327
            K+   L ++    I  + E N FKDD  +   N KV   +AA  NT V  G PQ K LQD+ PGII+QLGP+ +  L +LA Q +K        AP   E  D+ +PELV
Sbjct:   43 KLQSQLAKLHAVTIDNVAEANFFKDDGKVMHFN-KVGVQVAAQHNTSVFYGLPQEKNLQDLFPGIISQLGPEAIQALSQLAAQMEKHEAK----APADAEKKDEAIPELV 147          
BLAST of EY659646 vs. ExPASy Swiss-Prot
Match: NACB_LODEL (Nascent polypeptide-associated complex subunit beta OS=Lodderomyces elongisporus GN=EGD1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.453e-12
Identity = 44/112 (39.29%), Postives = 66/112 (58.93%), Query Frame = 1
Query:    4 KVSEHLEEIGLNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ--KQAPNAG-TGAPTTQEDDDDEVPELV 327
            K+ E L ++    I  +EE N FKDD  V+ F    VQ + AANT+  +G PQ K +  ++P I+ QLG +NL+ LR+LAEQ Q  K   + G  G     E+ ++++P+LV
Sbjct:   38 KLIETLGKLKATKIEGVEEANFFKDDGKVLHFNRVGVQGAPAANTFAFTGYPQEKNITQLIPQILPQLGAENLEILRQLAEQIQAGKNPKDFGAAGEAGATEEANEDIPDLV 149          
BLAST of EY659646 vs. ExPASy Swiss-Prot
Match: NACB_ASHGO (Nascent polypeptide-associated complex subunit beta OS=Ashbya gossypii GN=EGD1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.237e-12
Identity = 45/114 (39.47%), Postives = 62/114 (54.39%), Query Frame = 1
Query:    4 KVSEHLEEIGLNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQ-----EDDDDEVPELV 327
            K+   L ++    +  +EE N FKDD  V+ F    VQ +   NT V  G PQ K LQD+ P II QLG +++D L +LA Q Q    NA   AP T+     E  D+++PEL+
Sbjct:   42 KLQAQLAKLKAVTMDQVEEANFFKDDGSVLHFNKVGVQVAPQHNTSVFYGIPQEKSLQDLFPSIIPQLGSESIDALTQLATQLQ----NAQAAAPATEGHEAGEKKDNDIPELI 151          
BLAST of EY659646 vs. ExPASy Swiss-Prot
Match: NACB_PICST (Nascent polypeptide-associated complex subunit beta OS=Pichia stipitis GN=EGD1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.740e-11
Identity = 41/111 (36.94%), Postives = 63/111 (56.76%), Query Frame = 1
Query:    4 KVSEHLEEIGLNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ--KQAPNAGTGAPTTQEDDDDEVPELV 327
            K+ E L ++    I  +EE N F++D  V+ F    VQ + A+NT+  +G PQ K +  ++P I+ QLG +NL+ LR+LAEQ Q  K       GAP      D+ +P+L+
Sbjct:   38 KLIEALGKLKATKIENVEEANFFREDGKVLHFNRVGVQGAAASNTFAFTGYPQEKNVTQLIPQILPQLGAENLEILRQLAEQLQAGKAPTELNAGAPA---GGDEGIPDLI 145          
BLAST of EY659646 vs. ExPASy Swiss-Prot
Match: NACB_DEBHA (Nascent polypeptide-associated complex subunit beta OS=Debaryomyces hansenii GN=EGD1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.740e-11
Identity = 42/110 (38.18%), Postives = 62/110 (56.36%), Query Frame = 1
Query:    4 KVSEHLEEIGLNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQK-QAPNAGTGAPTTQEDDDDEVPELV 327
            K+ E L ++    I  IEE N FK+D  V+ F    VQ +   NT+ ++G PQ K +  ++P I+ QLG +NL+ LRKLAEQ Q  + P    G     E+D   +P+L+
Sbjct:   39 KLIEALGKLKAQKIEGIEEANFFKEDGKVLHFNRVGVQGAAQHNTFALTGYPQEKDVTQLIPQILPQLGAENLEILRKLAEQIQAGKNPELNAGGAEGAEED---IPDLI 145          
BLAST of EY659646 vs. ExPASy Swiss-Prot
Match: NACB_CANAL (Nascent polypeptide-associated complex subunit beta OS=Candida albicans GN=EGD1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.740e-11
Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = 1
Query:    4 KVSEHLEEIGLNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ--KQAPNAGTGAPTTQED-DDDEVPELV 327
            K+ E L ++    I  +EE N F++D  V+ F    VQ + A+NT+  +G PQ K +  ++P I+ QLG +NL+ LR+LAEQ Q  K   +  TG+     D   +++P+LV
Sbjct:   38 KLIEALGKLKATKIEGVEEANFFREDGKVLHFNRVGVQGAPASNTFAFTGYPQEKNITQLIPQILPQLGAENLEILRQLAEQIQAGKTPKDFNTGSANAAADAGGEDIPDLV 149          
The following BLAST results are available for this feature:
BLAST of EY659646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
NACB_SCHPO5.898e-1439.09Nascent polypeptide-associated complex subunit bet... [more]
NACB_YARLI7.704e-1438.05Nascent polypeptide-associated complex subunit bet... [more]
NACB1_YEAST1.112e-1240.91Nascent polypeptide-associated complex subunit bet... [more]
NACB1_YEAS71.112e-1240.91Nascent polypeptide-associated complex subunit bet... [more]
NACB_LODEL1.453e-1239.29Nascent polypeptide-associated complex subunit bet... [more]
NACB_ASHGO3.237e-1239.47Nascent polypeptide-associated complex subunit bet... [more]
NACB_PICST2.740e-1136.94Nascent polypeptide-associated complex subunit bet... [more]
NACB_DEBHA2.740e-1138.18Nascent polypeptide-associated complex subunit bet... [more]
NACB_CANAL2.740e-1136.61Nascent polypeptide-associated complex subunit bet... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-E07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659646 ID=EY659646; Name=EY659646; organism=Citrus sinensis; type=EST; length=593bp
CAGAAGGTTTCAGAGCACCTTGAAGAGATAGGACTGAATGCTATTCCTGC
AATTGAGGAAGTTAACATTTTCAAGGATGACGTCGTTATTCAGTTCTTAA
ATCCCAAAGTACAAGCTTCAATTGCTGCCAACACATGGGTAGTTAGTGGT
GCCCCACAAACCAAGAAGTTGCAGGATATTCTCCCTGGAATTATCAATCA
ATTGGGGCCAGATAATTTGGACAACCTGAGGAAGTTGGCGGAGCAGTTTC
AGAAGCAAGCACCTAATGCAGGAACTGGTGCACCCACGACTCAAGAGGAC
GACGACGATGAGGTCCCAGAGCTTGTGGCAGGCGAGACGTTTGAAGCTGC
CGCAGAGGAGAAAACAGAGAAACCTGACGCTGCTTCTTAGAGAGTTTTAT
CTAGAGGGACTTTGTGTTATTCTATATATTTTCTATGTTTTTTGAGCTTT
TATTTTACTTTTCCGAGTCAACTTTCTCTTGTTTTATCTGATTCTCCCTG
TGACACTAGATATTGTTACTTTTAATTCAATGTTTTGCTCCAGTGAAACC
AGTGAAAACCTTTTTACTCTTTCAAAAAAAAAAAAAAAAAAAA
back to top