EY659615

Overview
NameEY659615
Unique NameEY659615
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length975
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659615 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.116e-14
Identity = 54/139 (38.85%), Postives = 71/139 (51.08%), Query Frame = 2
Query:   14 NPSFGAGINRPRP---TRPVHFWVMPWSNLRRWVGQV--FSKSYYTAYRGGANQLAVGYKTGVGLAGKIMGTYVWGYTVFSGTDPNINSIHYHVPVLAPNAHWISCVHR*H*VTIPITGTGINPSGTLRSRCYVQQGHG 415
            NP+   G+   R    TR V++ VM         G V  F  + Y +  GGAN ++ GY  G GL  +++GT+V  YTVFS TD    +   HVP LAP     + V   H  TIPITGTGINP+ +L +       HG
Sbjct:  122 NPAVTFGLLLARKLSLTRAVYYVVMQCLGAVCGAGVVKAFGSALYESAGGGANAVSPGYTKGDGLGAEVVGTFVLVYTVFSATDAKRTARDSHVPALAPLPIGFA-VFLVHLATIPITGTGINPARSLGAAIIYDNPHG 259          
BLAST of EY659615 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.116e-14
Identity = 44/99 (44.44%), Postives = 57/99 (57.58%), Query Frame = 2
Query:  116 FSKSYYTAYRGGANQLAVGYKTGVGLAGKIMGTYVWGYTVFSGTDPNINSIHYHVPVLAPNAHWISCVHR*H*VTIPITGTGINPSGTLRSRCYVQQGH 412
            F +  Y    GGAN +A GY  G GL  +I+GT++  YTVFS TD   N+   HVP+LAP     + V   H  TIPITGTGINP+ +L +     + H
Sbjct:  156 FQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFA-VFLVHLATIPITGTGINPARSLGAAIIYNRDH 253          
BLAST of EY659615 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.060e-13
Identity = 54/138 (39.13%), Postives = 71/138 (51.45%), Query Frame = 2
Query:   14 NPSFGAGINRPRP---TRPVHFWVMPWSNLRRWVGQV--FSKSYYTAYRGGANQLAVGYKTGVGLAGKIMGTYVWGYTVFSGTDPNINSIHYHVPVLAPNAHWISCVHR*H*VTIPITGTGINPSGTLRSRCYVQQGH 412
            NP+   G+   R    TR V + +M         G V  F  + Y    GGAN +A GY  G GL  +I+GT+V  YTVFS TD   ++   HVP+LAP     + V   H  TIPITGTGINP+ +L +     + H
Sbjct:  115 NPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQPTPYQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFA-VFLVHLATIPITGTGINPARSLGAAIIYNKDH 251          
BLAST of EY659615 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.060e-13
Identity = 54/138 (39.13%), Postives = 69/138 (50.00%), Query Frame = 2
Query:   14 NPSFGAGINRPRP---TRPVHFWVMPWSNLRRWVGQV--FSKSYYTAYRGGANQLAVGYKTGVGLAGKIMGTYVWGYTVFSGTDPNINSIHYHVPVLAPNAHWISCVHR*H*VTIPITGTGINPSGTLRSRCYVQQGH 412
            NP+   G+   R    TR V +  M         G V  F +  Y    GGAN +  GY  G GL  +I+GT+V  YTVFS TD   N+   HVP+LAP     + V   H  TIPITGTGINP+ +L +     + H
Sbjct:  116 NPAVTFGLFLARKLSLTRAVFYMAMQCLGAICGAGVVKGFQRGLYMGSGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFA-VFLVHLATIPITGTGINPARSLGAAIVYNRAH 252          
BLAST of EY659615 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.384e-13
Identity = 55/138 (39.86%), Postives = 71/138 (51.45%), Query Frame = 2
Query:   14 NPSFGAGINRPRP---TRPVHFWVMPWSNLRRWVGQV--FSKSYYTAYRGGANQLAVGYKTGVGLAGKIMGTYVWGYTVFSGTDPNINSIHYHVPVLAPNAHWISCVHR*H*VTIPITGTGINPSGTLRSRCYVQQGH 412
            NP+   G+   R    TR V + VM         G V  F  + Y    GGAN +A GY  G GL  +I+GT+V  YTVFS TD   ++   HVP+LAP     + V   H  TIPITGTGINP+ +L +     + H
Sbjct:  114 NPAVTFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVKGFQPNPYQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFA-VFLVHLATIPITGTGINPARSLGAAIIYNKDH 250          
BLAST of EY659615 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.028e-13
Identity = 53/138 (38.41%), Postives = 70/138 (50.72%), Query Frame = 2
Query:   14 NPSFGAGINRPRP---TRPVHFWVMPWSNLRRWVGQV--FSKSYYTAYRGGANQLAVGYKTGVGLAGKIMGTYVWGYTVFSGTDPNINSIHYHVPVLAPNAHWISCVHR*H*VTIPITGTGINPSGTLRSRCYVQQGH 412
            NP+   G+   R    TR + + VM         G V  F +  Y    GGAN +  GY  G GL  +I+GT+V  YTVFS TD   ++   HVP+LAP     + V   H  TIPITGTGINP+ +L +     + H
Sbjct:  116 NPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQEGLYMGAGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFA-VFLVHLATIPITGTGINPARSLGAAIVYNRSH 252          
BLAST of EY659615 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 4.028e-13
Identity = 44/99 (44.44%), Postives = 56/99 (56.57%), Query Frame = 2
Query:  116 FSKSYYTAYRGGANQLAVGYKTGVGLAGKIMGTYVWGYTVFSGTDPNINSIHYHVPVLAPNAHWISCVHR*H*VTIPITGTGINPSGTLRSRCYVQQGH 412
            F    Y    GGAN +A GY  G GL  +I+GT+V  YTVFS TD   ++   HVP+LAP     + V   H  TIPITGTGINP+ +L +     + H
Sbjct:  154 FQPGLYQTNGGGANVVAHGYTKGSGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFA-VFLVHLATIPITGTGINPARSLGAAIIYNKDH 251          
BLAST of EY659615 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.871e-13
Identity = 55/138 (39.86%), Postives = 68/138 (49.28%), Query Frame = 2
Query:   14 NPSFGAGINRPRP---TRPVHFWVMPWSNLRRWVGQV--FSKSYYTAYRGGANQLAVGYKTGVGLAGKIMGTYVWGYTVFSGTDPNINSIHYHVPVLAPNAHWISCVHR*H*VTIPITGTGINPSGTLRSRCYVQQGH 412
            NP+   G+   R    TR V + VM         G V  F    Y    GGAN +  GY  G GL  +I+GT+V  YTVFS TD   N+   HVP+LAP     + V   H  TIPITGTGINP+ +L +       H
Sbjct:  115 NPAVTFGLFLARKLSLTRAVFYMVMQCLGAICGAGVVKGFMVGPYQRLGGGANVVNPGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFA-VFLVHLATIPITGTGINPARSLGAAIIYNDEH 251          
BLAST of EY659615 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.399e-11
Identity = 42/105 (40.00%), Postives = 56/105 (53.33%), Query Frame = 2
Query:   98 RWVGQVFSKSYYTAYRGGANQLAVGYKTGVGLAGKIMGTYVWGYTVFSGTDPNINSIHYHVPVLAPNAHWISCVHR*H*VTIPITGTGINPSGTLRSRCYVQQGH 412
            R V + F +  Y    G  N +A GY  G GL  +I+GT++  YTVFS TD    +   HVP+LAP     + V   H  T+ ITGTGINP+ +L +     Q H
Sbjct:  148 RGVVKGFQQGLYMGNGGRRNVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRRARDSHVPILAPLPIGFA-VFLVHLATMGITGTGINPARSLGAAVIYNQHH 251          
The following BLAST results are available for this feature:
BLAST of EY659615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
PIP16_MAIZE8.116e-1438.85Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
PIP12_MAIZE8.116e-1444.44Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP14_ARATH1.060e-1339.13Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP13_ORYSJ1.060e-1339.13Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP13_ARATH1.384e-1339.86Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP15_MAIZE4.028e-1338.41Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP15_ARATH4.028e-1344.44Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP1_SOLLC6.871e-1339.86Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP11_MAIZE8.399e-1140.00Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-B07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659615 ID=EY659615; Name=EY659615; organism=Citrus sinensis; type=EST; length=975bp
CTTACTGGTNACAAATCCCAGTTTCGGTGCCGGNATTAACCGGCCTCGAC
CCACGCGTCCGGTACATTTTTGGGTCATGCCTTGGAGCAATCTCCGGCGG
TGGGTGGGTCAAGTCTTTTCAAAATCTTACTACACAGCGTACCGAGGAGG
GGCCAACCAGCTGGCCGTTGGGTACAAAACAGGCGTGGGATTGGCCGGCA
AGATCATGGGGACCTATGTGTGGGGATACACTGTGTTCTCTGGCACTGAT
CCCAATATAAACTCCATACACTACCATGTGCCCGTTTTGGCACCGAATGC
CCATTGGATTAGCTGCGTGCATAGGTGACACTAGGTCACAATTCCAATCA
CTGGAACTGGCATTAACCCATCAGGGACTCTCAGGAGCCGATGTTATGTA
CAACAAGGACATGGCTCGTGATGATCAATGGCTCTTCTGGGTTGGACCCT
TAATAACACGCGGCAATCGCGGGTTTCTACCACCAATTCATCTTGAAAGC
TGGATCTGACAATGCTCTTGGTTAATGGACGATGCACTTCCGTGCTCTGA
TTCTGTTTGGGAAAGAGGATTATGCACATCTTCATGGGGTTAACGATTTG
AAAATGGACAAGAACTACTGGGAAAGAGTGGACGTGAGTTAATTATCAAA
AGGTGAATCATGGTGGGGGCTGTGATTTAATGCTTCAAAGGATGGTACGC
CCAAATGGTATTAGACCATATTGAAGCTTGCTATTCTGGAATCCGCGATG
TTGTTGTAAACACTTAACTTATATTCACTTCTTTGATGTCCCAGAAAAAA
GAATAATCCTGGCTGGTCCGTATAATAGAACTAATTGTACAACGCGGGAC
GCCTAATCATGACTGTTATCTTGGAAACCCTAACCCATTGATTGGCCGCC
TCTTAAAACGCCAGACTTGGAAAACCTGGCGGTCCCAATGGATTTGGGGA
AAAAAATGCCCTTTAGGAATGGGAT
back to top