EY659604

Overview
NameEY659604
Unique NameEY659604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659604_ssr247 microsatellite EY659604_ssr247:247..258. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACT_GIALA (Actin OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.997e-22
Identity = 60/140 (42.86%), Postives = 74/140 (52.86%), Query Frame = 1
Query:  304 PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            PA+VIDNG+G  K GFAG+  P  + PTVV   +       S+ K                 +IGDEA+ K        LSYPI HGQ+ +WD ME+ W  C FN LR  P DH  LLTE+P     +RE   +IMFETF
Sbjct:    6 PAIVIDNGSGMCKAGFAGDDAPRAVFPTVVGRPKRETVLVGSTHKEE---------------YIGDEALAKR---GVLKLSYPIEHGQIKDWDMMEKVWHHCYFNELRAQPSDHAVLLTEAPKNPKANREKICQIMFETF 127          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACT5_ARATH (Putative actin-5 OS=Arabidopsis thaliana GN=ACT5 PE=5 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.390e-21
Identity = 58/144 (40.28%), Postives = 75/144 (52.08%), Query Frame = 1
Query:  307 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLD---FFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFMF 729
            A+V DNGTG  K GFAG+  P  + P+VV                      + GVM  +D    F+GDEA  +       +L YPI HG V NWD ME+ W    +N LR +PE+H  LLTE+PL    +RE   +IMFE+F F
Sbjct:   10 AIVCDNGTGMVKAGFAGDDAPRAVFPSVVG------------------RPRHRGVMVGMDEKDTFVGDEAQARR---GILSLKYPIEHGVVSNWDDMEKIWHHTFYNELRLEPEEHPILLTEAPLNPKVNREKMTQIMFESFAF 132          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACT_EUPCR (Actin, cytoplasmic OS=Euplotes crassus PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.431e-20
Identity = 52/147 (35.37%), Postives = 79/147 (53.74%), Query Frame = 1
Query:  289 DPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFMF 729
            +  ++ A+V+DNG+G  K GFAG  +PC + P+VVA  ++               Q   G   + D F+GDE   + +      LSYPI+ G + +WD M++ W    +N LR + E+H  LLTE+PL   ++RE    IMFE + F
Sbjct:    4 EENAKEAIVVDNGSGVVKAGFAGENQPCSVFPSVVAKPKT--------------KQVIVGGAGNKDCFVGDE---RQQKRGVCTLSYPIKSGMIKDWDGMQKIWDYTFYNELRIETENHPVLLTEAPLNPKQNRENMCRIMFEEYDF 133          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACT_CYAME (Actin OS=Cyanidioschyzon merolae PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.431e-20
Identity = 58/139 (41.73%), Postives = 75/139 (53.96%), Query Frame = 1
Query:  307 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            A+VIDNG+G  K GFAG+  P  + P++V          R   +A  +       M   D ++GDEA +K       +L YPI HG V NWD ME+ W    +N LR  PEDH  LLTE+PL    +RE   +IMFETF
Sbjct:    8 ALVIDNGSGMVKAGFAGDDAPRAVFPSIVG---------RPRHQAVMVG------MGQKDSYVGDEAQSKR---GILSLKYPIEHGIVTNWDDMEKIWYHTFYNELRISPEDHPVLLTEAPLNPKANREKMTQIMFETF 128          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACT_PHYME (Actin OS=Phytophthora megasperma PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.441e-20
Identity = 58/142 (40.85%), Postives = 75/142 (52.82%), Query Frame = 1
Query:  307 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            AVVIDNG+G  K GFAG+  P  + P++V + +                  + G+M  +   D +IGDEA  K        L YPI HG V NWD ME+ W    +N LR  PE+H  LLTE+PL    +RE   +IMFETF
Sbjct:    7 AVVIDNGSGMCKAGFAGDDAPRAVFPSIVGMPK------------------HLGIMVGMNQKDAYIGDEAQAKR---GVLTLRYPIEHGIVTNWDDMEKIWSHTFYNELRVAPEEHPVLLTEAPLNPKANRERMTQIMFETF 127          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACT2_PHYIN (Actin-2 OS=Phytophthora infestans GN=ACTB PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.441e-20
Identity = 58/142 (40.85%), Postives = 75/142 (52.82%), Query Frame = 1
Query:  307 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            AVVIDNG+G  K GFAG+  P  + P++V + +                  + G+M  +   D +IGDEA  K        L YPI HG V NWD ME+ W    +N LR  PE+H  LLTE+PL    +RE   +IMFETF
Sbjct:    7 AVVIDNGSGMCKAGFAGDDAPRAVFPSIVGMPK------------------HLGIMVGMNQKDAYIGDEAQAKR---GVLTLRYPIEHGIVTNWDDMEKIWSHTFYNELRVAPEEHPVLLTEAPLNPKANRERMTQIMFETF 127          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACT_TRYCR (Actin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.188e-20
Identity = 54/146 (36.99%), Postives = 76/146 (52.05%), Query Frame = 1
Query:  286 MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            M    + A+V DNG+G  K GF+G+   C + P++V   ++      S+SK                 F+GDEA  K       +L YPI HG V NWD ME+ W    +N +R +PE H  LLTE+P+   ++RE   +IMFETF
Sbjct:    1 MSDEEQSAIVCDNGSGMVKAGFSGDDALCHVFPSIVGRPKNEQAMMGSASKK---------------LFVGDEAQAKR---GVLSLKYPIEHGIVTNWDDMEKIWHHTFYNDVRVNPESHSVLLTEAPMNPKQNREKMTQIMFETF 128          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACT2_SCHCO (Actin-2 OS=Schizophyllum commune GN=ACT2 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.188e-20
Identity = 59/142 (41.55%), Postives = 73/142 (51.41%), Query Frame = 1
Query:  307 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            AVVIDNG+G  K GFAG+  P  + P++V                      + GVM  L   D ++GDEA  K        L YPI HG V NWD ME+ W    +N LR  PE+H  LLTE+PL    +RE   +IMFETF
Sbjct:    7 AVVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHHGVMVGLSNKDSYVGDEAQAKR---GVLTLKYPIEHGTVTNWDDMEKIWHHTYYNELRVAPEEHPVLLTEAPLNPKTNREKMTQIMFETF 127          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACT22_DICDI (Putative actin-22 OS=Dictyostelium discoideum GN=act22 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.188e-20
Identity = 59/149 (39.60%), Postives = 76/149 (51.01%), Query Frame = 1
Query:  286 MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            MD     A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE+H  LLTE+PL    +RE   +IMFETF
Sbjct:    1 MDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHTGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 128          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ACT1_DICDI (Major actin OS=Dictyostelium discoideum GN=act1 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 3.188e-20
Identity = 59/149 (39.60%), Postives = 76/149 (51.01%), Query Frame = 1
Query:  286 MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            MD     A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE+H  LLTE+PL    +RE   +IMFETF
Sbjct:    1 MDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHTGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 128          
The following BLAST results are available for this feature:
BLAST of EY659604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
ACT_GIALA1.997e-2242.86Actin OS=Giardia lamblia PE=3 SV=1[more]
ACT5_ARATH8.390e-2140.28Putative actin-5 OS=Arabidopsis thaliana GN=ACT5 P... [more]
ACT_EUPCR1.431e-2035.37Actin, cytoplasmic OS=Euplotes crassus PE=3 SV=1[more]
ACT_CYAME1.431e-2041.73Actin OS=Cyanidioschyzon merolae PE=3 SV=1[more]
ACT_PHYME2.441e-2040.85Actin OS=Phytophthora megasperma PE=3 SV=1[more]
ACT2_PHYIN2.441e-2040.85Actin-2 OS=Phytophthora infestans GN=ACTB PE=2 SV=... [more]
ACT_TRYCR3.188e-2036.99Actin OS=Trypanosoma cruzi PE=3 SV=1[more]
ACT2_SCHCO3.188e-2041.55Actin-2 OS=Schizophyllum commune GN=ACT2 PE=3 SV=1[more]
ACT22_DICDI3.188e-2039.60Putative actin-22 OS=Dictyostelium discoideum GN=a... [more]
ACT1_DICDI3.188e-2039.60Major actin OS=Dictyostelium discoideum GN=act1 PE... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-A07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659604 ID=EY659604; Name=EY659604; organism=Citrus sinensis; type=EST; length=935bp
CCACGCGTCCGGACAGTGATAGCAATGATGAAGAAGTTGATGAGCGAGGC
TTATCATTTCCATTATCGATGTTGTTGTTGAAATGGGTGTTGGATTTTGT
ACCAACTTACAAAGCTGCCGTGCGTTGAGTCGCTCCTTTCACTTGCGATT
CAAGTCTTTCGTATATCACCATCACCAACACTTTCTTCACGATCATGTTC
CATTGCCTTAACCCTTCTCTCGGATCTCAGTTGCGGATCCCTCGTTACCA
CCACCACCACGATTCTCACCTCCTTTCTCTTTACAATGGACCCCACTTCT
CGTCCTGCCGTCGTCATCGACAACGGCACCGGGTATACTAAGATGGGTTT
TGCGGGTAATGTAGAGCCGTGTTTTATTCTTCCGACTGTAGTAGCTGTAA
ACGAGTCGTTTTTAAATCAATCAAGATCTTCGTCAAAGGCCAATTGGCTT
GCACAGTACAACGCAGGCGTAATGGCCGACCTTGACTTCTTTATTGGAGA
TGAAGCAGTCACAAAATCGCGATCTAGTAGTACCTATAACCTTAGTTATC
CTATTAGGCATGGTCAGGTTGATAATTGGGATGCTATGGAGAGGTATTGG
CAGCAGTGTATATTTAATTACTTGCGTTGTGATCCAGAGGATCACTACTT
TCTGTTGACCGAGAGCCCGCTCACTGCTCCTGAGAGTAGAGAGTATACTG
GTGAGATCATGTTTGAGACTTTTATGTTCCTGGNNCTTATATTGCTGTGA
ATTCNGTGCTTGCACTGCAGCTGGGTACACACATCTAAATGTGAGAGACA
NGAGTTGTGTGGATGTTNGAATGGGGCTACTATGTAGTACAGTCCCAGAG
GGCTTGTCATGGGAGCACATTAGTCGATTCTATTGCTGAAAGATGCACTT
TTTCATCCCAGCTCTGCGGGAAAAGGGAAATATTC
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