EY659601

Overview
NameEY659601
Unique NameEY659601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1_STAAR (30S ribosomal protein S1 OS=Staphylococcus aureus (strain MRSA252) GN=rpsA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.884e-15
Identity = 49/118 (41.53%), Postives = 69/118 (58.47%), Query Frame = 1
Query:   40 KFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366
            K  E+D E +R++LS RKA+   +           L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV I S DR+  R+SLS K   PTP + I+
Sbjct:  157 KVEELDPENNRVILS-RKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIK 273          
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1_STAAN (30S ribosomal protein S1 OS=Staphylococcus aureus (strain N315) GN=rpsA PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.884e-15
Identity = 49/118 (41.53%), Postives = 69/118 (58.47%), Query Frame = 1
Query:   40 KFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366
            K  E+D E +R++LS RKA+   +           L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV I S DR+  R+SLS K   PTP + I+
Sbjct:  157 KVEELDPENNRVILS-RKAVEQEENDAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIK 273          
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1_STAAM (30S ribosomal protein S1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rpsA PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.884e-15
Identity = 49/118 (41.53%), Postives = 69/118 (58.47%), Query Frame = 1
Query:   40 KFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366
            K  E+D E +R++LS RKA+   +           L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV I S DR+  R+SLS K   PTP + I+
Sbjct:  157 KVEELDPENNRVILS-RKAVEQEENDAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIK 273          
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1_STAAC (30S ribosomal protein S1 OS=Staphylococcus aureus (strain COL) GN=rpsA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.884e-15
Identity = 49/118 (41.53%), Postives = 69/118 (58.47%), Query Frame = 1
Query:   40 KFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366
            K  E+D E +R++LS RKA+   +           L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV I S DR+  R+SLS K   PTP + I+
Sbjct:  157 KVEELDPENNRVILS-RKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIK 273          
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RR1_PORPU (30S ribosomal protein S1, chloroplastic OS=Porphyra purpurea GN=rps1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.884e-15
Identity = 38/102 (37.25%), Postives = 70/102 (68.63%), Query Frame = 1
Query:   40 KFVEVDEEQSRLVLSNRKAM-ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLE 342
            K + V+E+ + L+LS+R+A+ A + + L +G+++ G +  + PYG FI  G + GL+H+S+I+  +V  I +  + GDT+K +I+  D+++GR+SLS K L+
Sbjct:  162 KLLNVEEKSNNLILSHRRALIAQASSNLIVGNIIEGVINQITPYGLFIKAGNLKGLVHISEINVKQVERIPSQFKIGDTIKAVIIHVDKKQGRLSLSMKHLK 263          
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RR1_PORYE (30S ribosomal protein S1, chloroplastic OS=Porphyra yezoensis GN=rps1 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.379e-15
Identity = 36/101 (35.64%), Postives = 70/101 (69.31%), Query Frame = 1
Query:   40 KFVEVDEEQSRLVLSNRKAM-ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKL 339
            K + V+E+ + L+LS+R+A+ + + + L +G+++ G +  + PYG FI +G + GL+H+S+I+   +  I++  + GDT+K +I+  D+++GR+SLS K L
Sbjct:  162 KLLNVEEKSNNLILSHRRALISQASSNLIVGNIIEGIINQITPYGLFIKVGNLKGLVHISEINIKNLEQISSQFKIGDTIKAVIIHVDKKQGRLSLSMKHL 262          
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1_STAS1 (30S ribosomal protein S1 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpsA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.166e-14
Identity = 44/117 (37.61%), Postives = 68/117 (58.12%), Query Frame = 1
Query:   40 KFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366
            K  E+D   +R++LS +   A   A+        L  G V+ G V  L  +GAF+DIGG++GL+HVS++SH+ V     V+  G+T+ V I S D++  R+SLS K   P+P + I+
Sbjct:  157 KVEELDPANNRVILSRKAVEALENAEKKDELLESLNEGDVIEGKVARLTNFGAFVDIGGVDGLVHVSELSHEHVKSPEDVVSIGETVNVKIKSVDKDSERISLSIKDTLPSPFESIK 273          
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1_STAEQ (30S ribosomal protein S1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rpsA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.166e-14
Identity = 47/118 (39.83%), Postives = 70/118 (59.32%), Query Frame = 1
Query:   40 KFVEVDEEQSRLVLSNRKAM---------ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366
            K  E+D E +R++LS RKA+         A     L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+ V     V+  G+ +KV + S +++  R+SLS K   PTP + I+
Sbjct:  157 KVEELDPENNRVILS-RKAVEQLENDAKKASILDSLNEGDVIDGKVARLTNFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSVGEAVKVKVKSVEKDSERISLSIKDTLPTPFENIK 273          
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1_STAHJ (30S ribosomal protein S1 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpsA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.212e-14
Identity = 44/118 (37.29%), Postives = 69/118 (58.47%), Query Frame = 1
Query:   40 KFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366
            K  E+D E +R++LS RKA+  ++           L  G V+ G V  L  +GAF+DIGG++GL+HVS++SH+ V     V+  G  + V + S +++  R+SLS K   PTP + I+
Sbjct:  157 KVEELDPENNRVILS-RKAVEQAENDVKKASLLESLNAGDVIKGKVARLTNFGAFVDIGGVDGLVHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDTLPTPFESIK 273          
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1_RHIME (30S ribosomal protein S1 OS=Rhizobium meliloti GN=rpsA PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.203e-13
Identity = 42/116 (36.21%), Postives = 71/116 (61.21%), Query Frame = 1
Query:   40 KFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMI 363
            + +++D+ +  +V+S R  + +S+A+        L  G VV G V+++  YGAF+D+GGI+GLLHV+ ++  RV   + +L  G  +KV I+  ++E  R+SL  K+LE  P D I
Sbjct:  161 EILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMKQLESDPWDGI 276          
The following BLAST results are available for this feature:
BLAST of EY659601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
RS1_STAAR4.884e-1541.5330S ribosomal protein S1 OS=Staphylococcus aureus ... [more]
RS1_STAAN4.884e-1541.5330S ribosomal protein S1 OS=Staphylococcus aureus ... [more]
RS1_STAAM4.884e-1541.5330S ribosomal protein S1 OS=Staphylococcus aureus ... [more]
RS1_STAAC4.884e-1541.5330S ribosomal protein S1 OS=Staphylococcus aureus ... [more]
RR1_PORPU4.884e-1537.2530S ribosomal protein S1, chloroplastic OS=Porphyr... [more]
RR1_PORYE6.379e-1535.6430S ribosomal protein S1, chloroplastic OS=Porphyr... [more]
RS1_STAS13.166e-1437.6130S ribosomal protein S1 OS=Staphylococcus saproph... [more]
RS1_STAEQ3.166e-1439.8330S ribosomal protein S1 OS=Staphylococcus epiderm... [more]
RS1_STAHJ9.212e-1437.2930S ribosomal protein S1 OS=Staphylococcus haemoly... [more]
RS1_RHIME1.203e-1336.2130S ribosomal protein S1 OS=Rhizobium meliloti GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-A04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659601 ID=EY659601; Name=EY659601; organism=Citrus sinensis; type=EST; length=752bp
ATCAACTGCAGAAGAGCTTCTCGGTAAAGATCTTCCTCTAAATTTGTGGA
GGTTGATGAGGAACAGTCTAGGCTTGTCCTAAGTAACCGCAAGGCCATGG
CTGACAGCCAGGCACAGCTAGGAATTGGATCAGTGGTCATTGGTACTGTA
CAGAGCCTGAAACCATATGGTGCCTTCATTGACATTGGTGGAATCAATGG
TCTTCTTCATGTCAGTCAGATCAGTCACGATCGTGTGGCTGATATTGCTA
CAGTGCTTCAACCTGGTGATACTCTCAAGGTCATGATACTGAGCCATGAC
CGAGAGAGAGGCCGTGTCAGTCTTTCAACAAAGAAGTTAGAACCTACCCC
TGGAGACATGATTCGCAATCCAAAACTTGTTTTTGAGAAGGCTGAGGAGA
TGGCACAAACATTCAGGCAGAGAATTGCTCAAGCAGAAGCCATGGCTCGT
GCAGACATGCTTAGATTCCAGCCTGAGAGTGGCTTAACTCTTAACTCGGA
TGGGATCTTGGGTCCACTTTCACCTGACTTGCCGGCGGATGGATTAGATT
TGACTGACATTTCCCCAGCTGATGATTGAACTTNAATAGCAGTTGTATTG
TATCTTTTGCAACCAAAGACATATTATTAATTTTGTAAAATTTACTGCGA
TTGAAACTTNCAGCCAAATATGCAAGCTCAAATTTTTTCCTCTTGGGTAA
AAAAAAAAAAAAAAAAAAAANAANNNNNNCNAAAAAAAANATTNATAAAA
AA
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