EY659601

Overview
NameEY659601
Unique NameEY659601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1_PSEAE (30S ribosomal protein S1 OS=Pseudomonas aeruginosa GN=rpsA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.203e-13
Identity = 40/112 (35.71%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   40 KFVEVDEEQSRLVLSNRKAM-ADSQAQ-------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351
            K +++D++++ +V+S R  + A++ A+       L  G  V G V++L  YGAF+D+GG++GLLH++ ++  R+   + ++  GD + V +L  DRER RVSL  K+L   P
Sbjct:  155 KVIKLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDP 266          

HSP 2 Score: 69.3218 bits (168), Expect = 2.509e-11
Identity = 47/143 (32.87%), Postives = 79/143 (55.24%), Query Frame = 1
Query:   46 VEVDEEQSRLVLSNRKAMA----DSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATV-LQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARAD 456
            +++DEE+ R+ L  ++  +    D  +Q   G  + GT++S+  +G FI + GGI+GL+H+S IS + V + A    + GD L+ +ILS D ER R+SL  K+LE  P     N   + EK   +  T ++  A+   ++  D
Sbjct:  333 LDIDEERRRISLGIKQCKSNPWEDFSSQFNKGDRISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELETVILSVDPERERISLGIKQLEDDP---FSNYASLHEKGSIVRGTVKEVDAKGAVISLGD 472          
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1_BUCBP (30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rpsA PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.571e-13
Identity = 41/113 (36.28%), Postives = 72/113 (63.72%), Query Frame = 1
Query:   40 KFVEVDEEQSRLVLSNRKAMADSQAQ---------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351
            K +++D++++ +V+S R+A+ +S+           L  G +V G V++L  YGAF+D+GG++GLLH++ ++  RV   + ++  GD +K+ IL  DRE+ RVSL  K+L   P
Sbjct:  155 KVIKLDQKRNNVVVS-RRAVIESEYNAERNLLLETLQEGLIVSGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNIGDEVKIKILKFDREKIRVSLGLKQLSDDP 266          
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: ISPH_CLOAB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium acetobutylicum GN=ispH PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.052e-13
Identity = 44/96 (45.83%), Postives = 60/96 (62.50%), Query Frame = 1
Query:   70 RLVLSNRKAMADSQA--QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351
            R +LS  K   +     +L  G VV G V+ L  +GAF++I G++GLLHVS+IS  RV   A VL+ GD +KV +LS D+E  ++SLS KKL   P
Sbjct:  463 RALLSKEKEKVEETVWNKLEEGQVVEGEVKRLTDFGAFVEIEGVDGLLHVSEISWGRVEKPADVLKIGDKIKVYVLSVDKENKKLSLSVKKLTENP 558          
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1_HAEIN (30S ribosomal protein S1 OS=Haemophilus influenzae GN=rpsA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.680e-13
Identity = 39/112 (34.82%), Postives = 68/112 (60.71%), Query Frame = 1
Query:   40 KFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351
            K +++D++++ +V+S R  +    +Q        L  GS V G V++L  YGAF+D+GG++GLLH++ ++  RV   + ++  GD + V +L  D++R RVSL  K+L   P
Sbjct:  155 KVIKLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDP 266          
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1_PROSP (30S ribosomal protein S1 (Fragment) OS=Providencia sp. GN=rpsA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.500e-13
Identity = 41/112 (36.61%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   40 KFVEVDEEQSRLVLSNRKAM-ADSQAQ-------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351
            K +++D++++ +V+S R  + ++S A+       L  G  V G V++L  YGAF+D+GG++GLLH++ ++  RV   + ++  GD + V +L  DRER RVSL  K+L   P
Sbjct:   50 KVIKLDQKRNNVVVSRRAVIESESSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 161          
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1_COXBU (30S ribosomal protein S1 OS=Coxiella burnetii GN=rpsA PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.500e-13
Identity = 39/112 (34.82%), Postives = 69/112 (61.61%), Query Frame = 1
Query:   40 KFVEVDEEQSRLVLSNRKAM-----ADSQA---QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351
            K +++D+ ++ +V+S R  M     A+ QA   +L  G  + G ++++  YGAF+D+GG++GLLH++ ++  RV   + +L  GD + V +L  DR++ RVSL  K+L   P
Sbjct:  151 KIIKMDQRRNNVVVSRRAVMEAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGGVDGLLHITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDP 262          
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1_RICFE (30S ribosomal protein S1 OS=Rickettsia felis GN=rpsA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.572e-13
Identity = 39/117 (33.33%), Postives = 71/117 (60.68%), Query Frame = 1
Query:   40 KFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366
            K + +D++   +V+S R  + +S+++        +  G V+ GTV+++  YGAFID+G ++GLLH++ IS  RV   + VL+    +KVM++  D +  R+SL  K+L+  P + I+
Sbjct:  168 KILSMDKKLDNIVVSRRAILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIK 284          
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1_MYCTU (30S ribosomal protein S1 OS=Mycobacterium tuberculosis GN=rpsA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.572e-13
Identity = 40/112 (35.71%), Postives = 68/112 (60.71%), Query Frame = 1
Query:   40 KFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351
            K +E+D+ ++ +VLS R  +  +Q++        L  G++  G V S+  +GAF+D+GG++GL+HVS++S   +   + V+Q GD + V +L  D +R RVSLS K  +  P
Sbjct:  172 KIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQKGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283          
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1_SHIFL (30S ribosomal protein S1 OS=Shigella flexneri GN=rpsA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.971e-13
Identity = 39/112 (34.82%), Postives = 66/112 (58.93%), Query Frame = 1
Query:   40 KFVEVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351
            K +++D++++ +V+S R  +    +         L  G  V G V++L  YGAF+D+GG++GLLH++ ++  RV   + ++  GD + V +L  DRER RVSL  K+L   P
Sbjct:  155 KVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 266          
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1_RICCN (30S ribosomal protein S1 OS=Rickettsia conorii GN=rpsA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.971e-13
Identity = 39/117 (33.33%), Postives = 70/117 (59.83%), Query Frame = 1
Query:   40 KFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366
            K + +D++   +V+S R  + +S+++        +  G V+ GTV+++  YGAFID+G ++GLLH++ IS  RV   + VL     +KVM++  D +  R+SL  K+L+  P + I+
Sbjct:  168 KILSMDKKLGNIVVSRRAILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEVLDFNQKVKVMVIKFDEKNKRISLGIKQLDSNPWEAIK 284          
The following BLAST results are available for this feature:
BLAST of EY659601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
RS1_PSEAE1.203e-1335.7130S ribosomal protein S1 OS=Pseudomonas aeruginosa... [more]
RS1_BUCBP1.571e-1336.2830S ribosomal protein S1 OS=Buchnera aphidicola su... [more]
ISPH_CLOAB2.052e-1345.834-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
RS1_HAEIN2.680e-1334.8230S ribosomal protein S1 OS=Haemophilus influenzae... [more]
RS1_PROSP3.500e-1336.6130S ribosomal protein S1 (Fragment) OS=Providencia... [more]
RS1_COXBU3.500e-1334.8230S ribosomal protein S1 OS=Coxiella burnetii GN=r... [more]
RS1_RICFE4.572e-1333.3330S ribosomal protein S1 OS=Rickettsia felis GN=rp... [more]
RS1_MYCTU4.572e-1335.7130S ribosomal protein S1 OS=Mycobacterium tubercul... [more]
RS1_SHIFL5.971e-1334.8230S ribosomal protein S1 OS=Shigella flexneri GN=r... [more]
RS1_RICCN5.971e-1333.3330S ribosomal protein S1 OS=Rickettsia conorii GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-A04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659601 ID=EY659601; Name=EY659601; organism=Citrus sinensis; type=EST; length=752bp
ATCAACTGCAGAAGAGCTTCTCGGTAAAGATCTTCCTCTAAATTTGTGGA
GGTTGATGAGGAACAGTCTAGGCTTGTCCTAAGTAACCGCAAGGCCATGG
CTGACAGCCAGGCACAGCTAGGAATTGGATCAGTGGTCATTGGTACTGTA
CAGAGCCTGAAACCATATGGTGCCTTCATTGACATTGGTGGAATCAATGG
TCTTCTTCATGTCAGTCAGATCAGTCACGATCGTGTGGCTGATATTGCTA
CAGTGCTTCAACCTGGTGATACTCTCAAGGTCATGATACTGAGCCATGAC
CGAGAGAGAGGCCGTGTCAGTCTTTCAACAAAGAAGTTAGAACCTACCCC
TGGAGACATGATTCGCAATCCAAAACTTGTTTTTGAGAAGGCTGAGGAGA
TGGCACAAACATTCAGGCAGAGAATTGCTCAAGCAGAAGCCATGGCTCGT
GCAGACATGCTTAGATTCCAGCCTGAGAGTGGCTTAACTCTTAACTCGGA
TGGGATCTTGGGTCCACTTTCACCTGACTTGCCGGCGGATGGATTAGATT
TGACTGACATTTCCCCAGCTGATGATTGAACTTNAATAGCAGTTGTATTG
TATCTTTTGCAACCAAAGACATATTATTAATTTTGTAAAATTTACTGCGA
TTGAAACTTNCAGCCAAATATGCAAGCTCAAATTTTTTCCTCTTGGGTAA
AAAAAAAAAAAAAAAAAAAANAANNNNNNCNAAAAAAAANATTNATAAAA
AA
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