EY659599

Overview
NameEY659599
Unique NameEY659599
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659599 vs. ExPASy Swiss-Prot
Match: HDAC1_STRPU (Histone deacetylase 1 OS=Strongylocentrotus purpuratus GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 5.421e-84
Identity = 151/246 (61.38%), Postives = 181/246 (73.58%), Query Frame = 3
Query:  147 GVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLMSITPETHQDQLMQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWARGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVGEAFYTTDRVNDCSXHKFEIIFLVQGIYVILXIRK-ESLLPXCPLDDGIDDESYHYFVKPDIXKMMEV 881
            G K++VCY+YD +VGNYYYGQGHPMKPHRIRMTH L+ +YGL + M++ +P  A   ++ ++H+DDYV FL +I P+   +   Q++RFNVGEDCPVFDGL+ FCQ  +GGSV GAVKLN    DIAINWA GLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGV EAFYTTDRV   S HK+   F   G    +   K +      PL DGIDDESY    KP + K+ME+
Sbjct:    5 GTKKRVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLILNYGLYRKMEIYRPHKAVMEEMTKYHSDDYVKFLRTIRPDNMSEYTKQMQRFNVGEDCPVFDGLYEFCQLSSGGSVAGAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPLRDGIDDESYDKIFKPIMCKVMEM 250          
BLAST of EY659599 vs. ExPASy Swiss-Prot
Match: HDA1B_XENLA (Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-B PE=1 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 9.247e-84
Identity = 149/248 (60.08%), Postives = 180/248 (72.58%), Query Frame = 3
Query:  141 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLMSITPETHQDQLMQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWARGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVGEAFYTTDRVNDCSXHKFEIIFLVQGIYVILXIRK-ESLLPXCPLDDGIDDESYHYFVKPDIXKMMEV 881
            + G K+KVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+DDY+ FL SI P+   +   Q++RFNVGEDCPVFDGLF FCQ   GGSV  AVKLN    DI++NW+ GLHHAKK EASGFCYVNDIVLAILELLK H+RV+Y+DIDIHHGDGV EAFYTTDRV   S HK+   F   G    +   K +      PL DGIDDESY    KP + K+ME+
Sbjct:    4 SQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKASAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDISVNWSGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVVYIDIDIHHGDGVEEAFYTTDRVMSVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMTKVMEM 251          
BLAST of EY659599 vs. ExPASy Swiss-Prot
Match: HDA1A_XENLA (Probable histone deacetylase 1-A OS=Xenopus laevis GN=hdac1-A PE=1 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 9.247e-84
Identity = 151/248 (60.89%), Postives = 180/248 (72.58%), Query Frame = 3
Query:  141 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLMSITPETHQDQLMQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWARGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVGEAFYTTDRVNDCSXHKFEIIFLVQGIYVILXIRK-ESLLPXCPLDDGIDDESYHYFVKPDIXKMMEV 881
            T G K+KVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   D+ ++H+DDY+ FL SI P+   +   Q++RFNVGEDCPVFDGLF FCQ  AGGSV  AVKLN    DI++NW+ GLHHAKK EASGFCYVNDIVLAILELLK H+RV+Y+DIDIHHGDGV EAFYTTDRV   S HK+   F   G    +   K +       L DGIDDESY    KP + K+ME+
Sbjct:    4 TLGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIFRPHKASAEDMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVASAVKLNKQQTDISVNWSGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVVYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYALRDGIDDESYEAIFKPVMSKVMEM 251          
BLAST of EY659599 vs. ExPASy Swiss-Prot
Match: HDA6_ARATH (Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 1.208e-83
Identity = 155/260 (59.62%), Postives = 184/260 (70.77%), Query Frame = 3
Query:  111 DTGGNSLPSGTDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLMSITPETHQDQ--LMQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWARGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVGEAFYTTDRVNDCSXHKFEIIFLVQGIYVILXIRKESLLP-XCPLDDGIDDESYHYFVKPDIXKMMEV 881
            D  G SLPSG DG KR+V YFY+P +G+YYYGQGHPMKPHRIRM H+L+ HY L + +++ +P  A   D+ RFH+ +YV FL S++PE+  D      L+RFNVGEDCPVFDGLF FC+  AGGS+G AVKLN    DIAINW  GLHHAKK EASGFCYVNDIVL ILELLK  +RVLY+DID+HHGDGV EAFYTTDRV   S HKF   F   G    +   K        PL+DG+DDES+    +P I K+MEV
Sbjct:    4 DESGISLPSGPDGRKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHSLIIHYHLHRRLEISRPSLADASDIGRFHSPEYVDFLASVSPESMGDPSAARNLRRFNVGEDCPVFDGLFDFCRASAGGSIGAAVKLNRQDADIAINWGGGLHHAKKSEASGFCYVNDIVLGILELLKMFKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDVGAEKGKYYALNVPLNDGMDDESFRSLFRPLIQKVMEV 263          
BLAST of EY659599 vs. ExPASy Swiss-Prot
Match: HDAC2_CHICK (Histone deacetylase 2 OS=Gallus gallus GN=HDAC2 PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 1.130e-81
Identity = 148/246 (60.16%), Postives = 177/246 (71.95%), Query Frame = 3
Query:  147 GVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLMSITPETHQDQLMQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWARGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVGEAFYTTDRVNDCSXHKFEIIFLVQGIYVILXIRK-ESLLPXCPLDDGIDDESYHYFVKPDIXKMMEV 881
            G K+KVCY+YD ++GNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+D+Y+ FL SI P+   +   Q++RFNVGEDCPVFDGLF FCQ   GGSV GAVKLN    D+A+NWA GLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGV EAFYTTDRV   S       F   G    +   K +      P+ DGIDDESY    KP I K+ME+
Sbjct:    7 GGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSEVSMVNNFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPIISKVMEM 252          
BLAST of EY659599 vs. ExPASy Swiss-Prot
Match: HDAC1_DROME (Histone deacetylase Rpd3 OS=Drosophila melanogaster GN=Rpd3 PE=1 SV=2)

HSP 1 Score: 297.745 bits (761), Expect = 6.202e-80
Identity = 143/243 (58.85%), Postives = 174/243 (71.60%), Query Frame = 3
Query:  153 KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLMSITPETHQDQLMQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWARGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVGEAFYTTDRVNDCSXHKFEIIFLVQGIYVILXIRK-ESLLPXCPLDDGIDDESYHYFVKPDIXKMME 878
            K++VCY+YD ++GNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ +FH+D+YV FL SI P+   +   Q++RFNVGEDCPVFDGL+ FCQ  AGGSV  AVKLN    +I INW  GLHHAKK EASGFCYVNDIVL ILELLK H+RVLY+DID+HHGDGV EAFYTTDRV   S HK+   F   G    +   K +      PL DG+DD++Y     P I K+ME
Sbjct:    6 KKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATADEMTKFHSDEYVRFLRSIRPDNMSEYNKQMQRFNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDDAYESIFVPIISKVME 248          
BLAST of EY659599 vs. ExPASy Swiss-Prot
Match: HDAC3_TETNG (Histone deacetylase 3 OS=Tetraodon nigroviridis GN=hdac3 PE=3 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 1.058e-79
Identity = 139/243 (57.20%), Postives = 172/243 (70.78%), Query Frame = 3
Query:  159 KVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLMSITPETHQDQLMQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWARGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVGEAFYTTDRVNDCSXHKFEIIFLVQGIYVILXIRKESLLPXC---PLDDGIDDESYHYFVKPDIXKMME 878
            +  YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL  ++P   Q     L  FNVG+DCPVF GLF FC  Y G S+ GA +LNH +CDIAINWA GLHHAKK EASGFCYVNDIV++ILELLK H RVLY+DIDIHHGDGV EAFY TDRV   S HK+   F   G   +  +  ES    C   PL DGIDD+SY    +P I ++++
Sbjct:    4 RTSYFYDPDVGNFHYGAGHPMKPHRLSLTHSLVLHYGLYKKMMVFKPYKASQHDMCRFHSEDYIDFLQKVSPNNMQGFTKSLNTFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNHKICDIAINWAGGLHHAKKFEASGFCYVNDIVISILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFF-PGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYRQLFQPVIKQVVD 245          
BLAST of EY659599 vs. ExPASy Swiss-Prot
Match: HDAC3_DANRE (Histone deacetylase 3 OS=Danio rerio GN=hdac3 PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 2.357e-79
Identity = 139/243 (57.20%), Postives = 171/243 (70.37%), Query Frame = 3
Query:  159 KVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLMSITPETHQDQLMQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWARGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVGEAFYTTDRVNDCSXHKFEIIFLVQGIYVILXIRKESLLPXC---PLDDGIDDESYHYFVKPDIXKMME 878
            +  YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL  ++P   Q     L  FNVG DCPVF GLF FC  Y G S+ GA +LNH +CDIAINWA GLHHAKK EASGFCYVNDIV++ILELLK H RVLY+DIDIHHGDGV EAFY TDRV   S HK+   F   G   +  +  ES    C   PL DGIDD+SY    +P I ++++
Sbjct:    4 RTAYFYDPDVGNFHYGAGHPMKPHRLSLTHSLVLHYGLYKKMMVFKPYKASQHDMCRFHSEDYIDFLQKVSPNNMQGFTKSLNTFNVGGDCPVFPGLFEFCSRYTGASLQGATQLNHKICDIAINWAGGLHHAKKFEASGFCYVNDIVISILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFF-PGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYRQLFQPVIKQVVD 245          
BLAST of EY659599 vs. ExPASy Swiss-Prot
Match: HDAC3_XENTR (Histone deacetylase 3 OS=Xenopus tropicalis GN=hdac3 PE=2 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 3.078e-79
Identity = 140/244 (57.38%), Postives = 173/244 (70.90%), Query Frame = 3
Query:  156 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLMSITPETHQDQLMQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWARGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVGEAFYTTDRVNDCSXHKFEIIFLVQGIYVILXIRKESLLPXC---PLDDGIDDESYHYFVKPDIXKMME 878
            + V YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL  ++P   Q     L  FNVG+DCPVF GLF FC  Y G S+ GA +LN+ +CDIAINWA GLHHAKK EASGFCYVNDIV+ ILELLK H RVLYVDIDIHHGDGV EAFY TDRV   S HK+   F   G   +  +  ES    C   PL DGIDD+SY +  +P I ++++
Sbjct:    3 KTVAYFYDPDVGNFHYGTGHPMKPHRLSLTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPNNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYVDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFF-PGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYRHLFQPVIKQVID 245          
BLAST of EY659599 vs. ExPASy Swiss-Prot
Match: HDAC3_RAT (Histone deacetylase 3 OS=Rattus norvegicus GN=Hdac3 PE=1 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 6.858e-79
Identity = 139/244 (56.97%), Postives = 173/244 (70.90%), Query Frame = 3
Query:  156 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLMSITPETHQDQLMQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWARGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVGEAFYTTDRVNDCSXHKFEIIFLVQGIYVILXIRKESLLPXC---PLDDGIDDESYHYFVKPDIXKMME 878
            + V YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL  ++P   Q     L  FNVG+DCPVF GLF FC  Y G S+ GA +LN+ +CDIAINWA GLHHAKK EASGFCYVNDIV+ ILELLK H RVLY+DIDIHHGDGV EAFY TDRV   S HK+   F   G   +  +  ES    C   PL DGIDD+SY +  +P I ++++
Sbjct:    3 KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFF-PGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVISQVVD 245          
The following BLAST results are available for this feature:
BLAST of EY659599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HDAC1_STRPU5.421e-8461.38Histone deacetylase 1 OS=Strongylocentrotus purpur... [more]
HDA1B_XENLA9.247e-8460.08Probable histone deacetylase 1-B OS=Xenopus laevis... [more]
HDA1A_XENLA9.247e-8460.89Probable histone deacetylase 1-A OS=Xenopus laevis... [more]
HDA6_ARATH1.208e-8359.62Histone deacetylase 6 OS=Arabidopsis thaliana GN=H... [more]
HDAC2_CHICK1.130e-8160.16Histone deacetylase 2 OS=Gallus gallus GN=HDAC2 PE... [more]
HDAC1_DROME6.202e-8058.85Histone deacetylase Rpd3 OS=Drosophila melanogaste... [more]
HDAC3_TETNG1.058e-7957.20Histone deacetylase 3 OS=Tetraodon nigroviridis GN... [more]
HDAC3_DANRE2.357e-7957.20Histone deacetylase 3 OS=Danio rerio GN=hdac3 PE=2... [more]
HDAC3_XENTR3.078e-7957.38Histone deacetylase 3 OS=Xenopus tropicalis GN=hda... [more]
HDAC3_RAT6.858e-7956.97Histone deacetylase 3 OS=Rattus norvegicus GN=Hdac... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-A02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659599 ID=EY659599; Name=EY659599; organism=Citrus sinensis; type=EST; length=944bp
CGCAAGTTAAGCCCCATCTGTTTTATTCTCTTGAGGTCTCGTCCCGTTGC
ATTCTTAGTTAGTGTTGGCTCTCCCAGTAAGTGCAGGCCCCAAGAAATAT
TATTCATATGGACACTGGAGGCAATTCTTTACCATCTGGTACTGATGGCG
TTAAGAGAAAGGTGTGTTATTTCTACGACCCAGAGGTGGGCAATTACTAC
TATGGACAGGGTCACCCGATGAAACCCCATCGCATTCGTATGACCCATGC
CCTTCTCGCCCACTACGGCTTGCTTCAGAACATGCAGGTCCTCAAACCTT
TTCCTGCTAGGGAAAGGGATCTTTGCCGCTTCCATGCCGATGATTATGTC
TCCTTCCTCATGAGTATCACCCCTGAGACTCATCAGGATCAGCTTATGCA
GCTCAAGCGCTTTAATGTTGGTGAAGATTGCCCTGTCTTTGACGGTCTTT
TCTCCTTCTGTCAAACTTATGCTGGGGGCTCTGTTGGTGGTGCTGTCAAG
TTGAATCACGGCCTCTGTGATATTGCTATCAATTGGGCCCGTGGCCTTCA
TCATGCTAAGAAATGTGAAGCTTCCGGATTCTGTTATGTCAATGACATTG
TCTTGGCCATTTTGGAGCTACTTAAGCAGCATGAGCGTGTATTATATGTA
GATATTGATATCCATCATGGAGATGGCGTTGGAGAAGCATTTTATACAAC
TGATAGGGTAAATGACTGTTCATTNCATAAGTTCGAGATTATTTTCCTGG
TACAGGGGATATACGTGATATTGGNTATTCGAAAGGAAAGTCTACTNCCT
NAATGTCCTCTTGATGATGGNATCGATGATGAAAGCTACCATTACTTTGT
CAAACCCGATATCNGAAAAATGATGGAGGTTTTAAACCTGGTGCTGTGGT
CCTNCATGGGGGGCTGACTCATGTCTGGGGAAAGTTTAGATGCT
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