EY659555 | Citrus Genome Database

Overview


Name	EY659555
Unique Name	EY659555
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	897

Libraries


Library Name	Type
Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig5773	contig	Csv1_Contig5773:323..1218.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of EY659555 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.491e-19
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 2

Query:   77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
            M I VKTLTGK I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76

HSP 2 Score: 97.0561 bits (240), Expect = 1.491e-19
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 2

Query:  305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532
            M I VKTLTGK I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76

HSP 3 Score: 73.9442 bits (180), Expect = 7.386e-13
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 2

Query:  533 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDIEGIPPDQQRLIFAGKQLEDGRTLAD 706
            M I VKTLTGK I L++E +D ++ +K K+++ EGIPP QQRLIFAGKQ+ D +T AD
Sbjct:    1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAAD 58

HSP 4 Score: 21.1718 bits (43), Expect = 7.386e-13
Identity = 9/12 (75.00%), Postives = 9/12 (75.00%), Query Frame = 3

Query:  723 STLHLCLRLRGG 758
            S LHL L LRGG
Sbjct:   65 SVLHLVLALRGG 76

[Close]

BLAST of EY659555 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.947e-19
Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 2

Query:   83 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 307
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLVL LRGG+
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGGL 77

HSP 2 Score: 96.6709 bits (239), Expect = 1.947e-19
Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 2

Query:  311 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 535
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLVL LRGG+
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGGL 77

HSP 3 Score: 73.559 bits (179), Expect = 9.598e-13
Identity = 34/61 (55.74%), Postives = 46/61 (75.41%), Query Frame = 2

Query:  539 IFVKTLTGKTITLEVESSDTIDNVKAKIQDIEGIPPDQQRLIFAGKQLEDGRTLADTTFKG 721
            I VKTLTGK I +++E +DTID +K ++++ EGIPP QQRLI+AGKQL D +T  D   +G
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEG 63

HSP 4 Score: 21.1718 bits (43), Expect = 9.598e-13
Identity = 9/12 (75.00%), Postives = 9/12 (75.00%), Query Frame = 3

Query:  723 STLHLCLRLRGG 758
            S LHL L LRGG
Sbjct:   65 SVLHLVLALRGG 76

[Close]

BLAST of EY659555 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.153e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2

Query:   77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 2 Score: 93.2041 bits (230), Expect = 2.153e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2

Query:  305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 3 Score: 70.0922 bits (170), Expect = 1.012e-11
Identity = 31/63 (49.21%), Postives = 46/63 (73.02%), Query Frame = 2

Query:  533 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDIEGIPPDQQRLIFAGKQLEDGRTLADTTFKG 721
            M I VKTLTGK I +++E +D ++ +K ++++ EGIPP QQRLI++GKQ+ D +T AD    G
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILG 63

HSP 4 Score: 21.1718 bits (43), Expect = 1.012e-11
Identity = 9/12 (75.00%), Postives = 9/12 (75.00%), Query Frame = 3

Query:  723 STLHLCLRLRGG 758
            S LHL L LRGG
Sbjct:   65 SVLHLVLALRGG 76

[Close]

BLAST of EY659555 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.153e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2

Query:   77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 2 Score: 93.2041 bits (230), Expect = 2.153e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2

Query:  305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 3 Score: 70.0922 bits (170), Expect = 1.012e-11
Identity = 31/63 (49.21%), Postives = 46/63 (73.02%), Query Frame = 2

Query:  533 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDIEGIPPDQQRLIFAGKQLEDGRTLADTTFKG 721
            M I VKTLTGK I +++E +D ++ +K ++++ EGIPP QQRLI++GKQ+ D +T AD    G
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILG 63

HSP 4 Score: 21.1718 bits (43), Expect = 1.012e-11
Identity = 9/12 (75.00%), Postives = 9/12 (75.00%), Query Frame = 3

Query:  723 STLHLCLRLRGG 758
            S LHL L LRGG
Sbjct:   65 SVLHLVLALRGG 76

[Close]

BLAST of EY659555 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.153e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2

Query:   77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 2 Score: 93.2041 bits (230), Expect = 2.153e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2

Query:  305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 3 Score: 70.0922 bits (170), Expect = 1.012e-11
Identity = 31/63 (49.21%), Postives = 46/63 (73.02%), Query Frame = 2

Query:  533 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDIEGIPPDQQRLIFAGKQLEDGRTLADTTFKG 721
            M I VKTLTGK I +++E +D ++ +K ++++ EGIPP QQRLI++GKQ+ D +T AD    G
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILG 63

HSP 4 Score: 21.1718 bits (43), Expect = 1.012e-11
Identity = 9/12 (75.00%), Postives = 9/12 (75.00%), Query Frame = 3

Query:  723 STLHLCLRLRGG 758
            S LHL L LRGG
Sbjct:   65 SVLHLVLALRGG 76

[Close]

BLAST of EY659555 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.153e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2

Query:   77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 2 Score: 93.2041 bits (230), Expect = 2.153e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2

Query:  305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 3 Score: 70.0922 bits (170), Expect = 1.012e-11
Identity = 31/63 (49.21%), Postives = 46/63 (73.02%), Query Frame = 2

Query:  533 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDIEGIPPDQQRLIFAGKQLEDGRTLADTTFKG 721
            M I VKTLTGK I +++E +D ++ +K ++++ EGIPP QQRLI++GKQ+ D +T AD    G
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILG 63

HSP 4 Score: 21.1718 bits (43), Expect = 1.012e-11
Identity = 9/12 (75.00%), Postives = 9/12 (75.00%), Query Frame = 3

Query:  723 STLHLCLRLRGG 758
            S LHL L LRGG
Sbjct:   65 SVLHLVLALRGG 76

[Close]

BLAST of EY659555 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.153e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2

Query:   77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 2 Score: 93.2041 bits (230), Expect = 2.153e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2

Query:  305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 3 Score: 70.0922 bits (170), Expect = 1.012e-11
Identity = 31/63 (49.21%), Postives = 46/63 (73.02%), Query Frame = 2

Query:  533 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDIEGIPPDQQRLIFAGKQLEDGRTLADTTFKG 721
            M I VKTLTGK I +++E +D ++ +K ++++ EGIPP QQRLI++GKQ+ D +T AD    G
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILG 63

HSP 4 Score: 21.1718 bits (43), Expect = 1.012e-11
Identity = 9/12 (75.00%), Postives = 9/12 (75.00%), Query Frame = 3

Query:  723 STLHLCLRLRGG 758
            S LHL L LRGG
Sbjct:   65 SVLHLVLALRGG 76

[Close]

BLAST of EY659555 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.811e-18
Identity = 41/76 (53.95%), Postives = 58/76 (76.32%), Query Frame = 2

Query:   77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
            + + V+TLTGK I +++E +DT+D +K +++++EGIPP QQRLI+ GKQL D +T  DY I+  S LHLVL LRGG
Sbjct:    1 LNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 2.811e-18
Identity = 41/76 (53.95%), Postives = 58/76 (76.32%), Query Frame = 2

Query:  305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532
            + + V+TLTGK I +++E +DT+D +K +++++EGIPP QQRLI+ GKQL D +T  DY I+  S LHLVL LRGG
Sbjct:    1 LNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGG 76

HSP 3 Score: 68.5514 bits (166), Expect = 4.616e-12
Identity = 29/58 (50.00%), Postives = 44/58 (75.86%), Query Frame = 2

Query:  533 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDIEGIPPDQQRLIFAGKQLEDGRTLAD 706
            + + V+TLTGK I +++E +DT+D +K ++++ EGIPP QQRLI+ GKQL D +T  D
Sbjct:    1 LNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHD 58

HSP 4 Score: 23.8682 bits (50), Expect = 4.616e-12
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 3

Query:  723 STLHLCLRLRGGDF 764
            S LHL L LRGG+F
Sbjct:   65 SVLHLVLALRGGNF 78

[Close]

BLAST of EY659555 vs. ExPASy Swiss-Prot
Match: RUB3_ARATH (NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN=RUB3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.822e-17
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 2

Query:   77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
            M+I VKTLT K I +E+E +DTI+ +K +I++KEGIPP  QR+++ GKQL D  T   YN+++ S LHLVL LRGG
Sbjct:    1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76

HSP 2 Score: 90.1225 bits (222), Expect = 1.822e-17
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 2

Query:  305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532
            M+I VKTLT K I +E+E +DTI+ +K +I++KEGIPP  QR+++ GKQL D  T   YN+++ S LHLVL LRGG
Sbjct:    1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76

[Close]

BLAST of EY659555 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.380e-17
Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 2

Query:   77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 307
            M I VKTLTGK I ++++ +D I  +K ++++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG+
Sbjct:    1 MLIKVKTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGGL 77

HSP 2 Score: 89.7373 bits (221), Expect = 2.380e-17
Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 2

Query:  305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 535
            M I VKTLTGK I ++++ +D I  +K ++++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG+
Sbjct:    1 MLIKVKTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGGL 77

The following BLAST results are available for this feature:

BLAST of EY659555 vs. ExPASy Swiss-Prot

BLAST of EY659555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99


Match Name	E-value	Identity	Description
NEDD8_CAEEL	1.491e-19	60.53	NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1	[more]
RUB2_ARATH	1.947e-19	61.33	NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN...	[more]
NEDD8_RAT	2.153e-18	56.58	NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1	[more]
NEDD8_RABIT	2.153e-18	56.58	NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1	[more]
NEDD8_MOUSE	2.153e-18	56.58	NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2	[more]
NEDD8_HUMAN	2.153e-18	56.58	NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1	[more]
NEDD8_BOVIN	2.153e-18	56.58	NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1	[more]
RUB3_ORYSJ	2.811e-18	53.95	NEDD8-like protein RUB3 OS=Oryza sativa subsp. jap...	[more]
RUB3_ARATH	1.822e-17	55.26	NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN...	[more]
NEDD8_DICDI	2.380e-17	53.25	NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-101-011-D11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY659555 ID=EY659555; Name=EY659555; organism=Citrus sinensis; type=EST; length=897bp
ATTAAACTTTAAAAAAAAAAAAGAACAAAAAGCCCTTTAGTTTAGATACC
GAGGCTCCCAATCTCAGCCTTCCAACATGCAGATCTTTGTGAAAACTTTG
ACCGGCAAGACCATCACTCTCGAGGTGGAGAGCTCCGACACGATCGACAA
CGTCAAGGCTAAGATCCAGGACAAGGAAGGGATTCCACCGGACCAGCAGC
GGCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGGCGCACCTTGGCGGAT
TACAACATCCAGAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTCCGCGG
CGGCATGCAGATCTTCGTCAAGACTCTGACCGGGAAGACGATCACCCTGG
AGGTGGAGAGCTCCGACACGATCGACAACGTGAAGGCGAAGATCCAGGAC
AAGGAAGGGATCCCCCCGGACCAGCAGAGGCTCATCTTCGCCGGCAAGCA
GCTGGAGGACGGCCGCACCCTGGCCGATTATAACATCCAGAAGGAATCCA
CGCTCCACCTTGTGTTGCGCCTGAGGGGAGGAATGCAGATCTTCGTCAAG
ACGTTGACCGGGAAGACGATCACCCTGGAGGTGGAGAGCTCCGACACGAT
CGACAACGTGAAGGCCAAGATCCAGGACATAGAGGGGATTCCTCCGGACC
AGCAGAGGCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGGACTCTC
GCCGATACAACATTCAAAGGAGTCCACTCTCCACCTTTGTCTCCGTCTTC
GTGGTGGTGACTTCTAAAAAAATAATGTGGATGTGTCCGCCGTTTGATTG
GATGGCGCCTATAATATTAATTACGTGGGATTGGGCGCTTTGCTTAATTA
TTTTGGATTACAATTTGTAATGGCCAGCCGTTGGGCCTAATTCCTCT