EY659523

Overview
NameEY659523
Unique NameEY659523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_PANGI (50S ribosomal protein L33, chloroplastic OS=Panax ginseng GN=rpl33 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.787e-21
Identity = 47/66 (71.21%), Postives = 52/66 (78.79%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV + VI+ECT  VRNG N  S G+S YITQ NRH+TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDVRITVILECTSCVRNGVNKVSTGISRYITQKNRHNTPNRLELRKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_NANDO (50S ribosomal protein L33, chloroplastic OS=Nandina domestica GN=rpl33 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.787e-21
Identity = 47/66 (71.21%), Postives = 52/66 (78.79%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV +RVI+EC   VRN  N ES G+S YITQ NRH+TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDVRIRVILECNSCVRNDLNKESPGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_ILLOL (50S ribosomal protein L33, chloroplastic OS=Illicium oligandrum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.787e-21
Identity = 47/66 (71.21%), Postives = 54/66 (81.82%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV + VI+ECT   +NGAN +S GVS YIT+ NRH+TP RLELIKFCPYCYKHT+HGEI K
Sbjct:    1 MAAGKDVRVTVILECTSCAKNGANKKSPGVSRYITEKNRHNTPGRLELIKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_GOSHI (50S ribosomal protein L33, chloroplastic OS=Gossypium hirsutum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.787e-21
Identity = 46/66 (69.70%), Postives = 52/66 (78.79%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA  KDV + +I+ECT  VRNG N ES G+S YITQ NRH+TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKSKDVRVTIILECTSCVRNGVNKESTGISRYITQKNRHNTPSRLELKKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_GOSBA (50S ribosomal protein L33, chloroplastic OS=Gossypium barbadense GN=rpl33 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.787e-21
Identity = 46/66 (69.70%), Postives = 52/66 (78.79%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA  KDV + +I+ECT  VRNG N ES G+S YITQ NRH+TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKSKDVRVTIILECTSCVRNGVNKESTGISRYITQKNRHNTPSRLELKKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_SPIOL (50S ribosomal protein L33, chloroplastic OS=Spinacia oleracea GN=rpl33 PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 1.393e-20
Identity = 47/66 (71.21%), Postives = 52/66 (78.79%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV ++VI+ECT  VR   N  SRGVS YITQ NRH+TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDVRVKVILECTGCVRKSVNKGSRGVSRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_POPTR (50S ribosomal protein L33, chloroplastic OS=Populus trichocarpa GN=rpl33 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.393e-20
Identity = 46/66 (69.70%), Postives = 52/66 (78.79%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MANGKDV +RVI+ECT  VR   N +S G+S YITQ NRH+ P RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MANGKDVRIRVILECTSCVRKSVNKKSIGISRYITQKNRHNRPSRLELRKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_POPAL (50S ribosomal protein L33, chloroplastic OS=Populus alba GN=rpl33 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.393e-20
Identity = 46/66 (69.70%), Postives = 52/66 (78.79%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MANGKDV +RVI+ECT  VR   N +S G+S YITQ NRH+ P RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MANGKDVRIRVILECTSCVRKSVNKKSIGISRYITQKNRHNRPSRLELRKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_TOBAC (50S ribosomal protein L33, chloroplastic OS=Nicotiana tabacum GN=rpl33 PE=3 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 2.376e-20
Identity = 46/66 (69.70%), Postives = 52/66 (78.79%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV + VI+ECT  VRN  +  SRG+S YITQ NRH+TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDVRVTVILECTSCVRNSVDKVSRGISRYITQKNRHNTPNRLELKKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_NICTO (50S ribosomal protein L33, chloroplastic OS=Nicotiana tomentosiformis GN=rpl33 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.376e-20
Identity = 46/66 (69.70%), Postives = 52/66 (78.79%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV + VI+ECT  VRN  +  SRG+S YITQ NRH+TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDVRVTVILECTSCVRNSVDKVSRGISRYITQKNRHNTPNRLELKKFCPYCYKHTIHGEIKK 66
The following BLAST results are available for this feature:
BLAST of EY659523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RK33_PANGI4.787e-2171.2150S ribosomal protein L33, chloroplastic OS=Panax ... [more]
RK33_NANDO4.787e-2171.2150S ribosomal protein L33, chloroplastic OS=Nandin... [more]
RK33_ILLOL4.787e-2171.2150S ribosomal protein L33, chloroplastic OS=Illici... [more]
RK33_GOSHI4.787e-2169.7050S ribosomal protein L33, chloroplastic OS=Gossyp... [more]
RK33_GOSBA4.787e-2169.7050S ribosomal protein L33, chloroplastic OS=Gossyp... [more]
RK33_SPIOL1.393e-2071.2150S ribosomal protein L33, chloroplastic OS=Spinac... [more]
RK33_POPTR1.393e-2069.7050S ribosomal protein L33, chloroplastic OS=Populu... [more]
RK33_POPAL1.393e-2069.7050S ribosomal protein L33, chloroplastic OS=Populu... [more]
RK33_TOBAC2.376e-2069.7050S ribosomal protein L33, chloroplastic OS=Nicoti... [more]
RK33_NICTO2.376e-2069.7050S ribosomal protein L33, chloroplastic OS=Nicoti... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-A12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659523 ID=EY659523; Name=EY659523; organism=Citrus sinensis; type=EST; length=916bp
GCAAAGATTACGGAAATCGAAATATGGGGTGGGGCAGAGTATTCTCCACT
ACAATATCCTTAGATGAAATACTGGACTGCGATTCAGCAATATAGTTAGA
AATTCTTGTGTCACTTATTATTTTTTATTGTGAGATCCTATTTATTGACT
ATATTGATTGCAATAAAATCTTTATTTCATAAGTTTTCTTGGAGTGGTTA
GCGACTTCTATTTTTTTGTGCCGACGCTTCTTATTCGTAGCGGGTCGGAA
AATAAAATAGCTGGGTGAATCAAAAACCCCAATGAGGCTGATGGCCAACG
GTAAGGACGTCCTATTAAGGGTTATTGTGGAATGTACTATGAGAGTTCGA
AACGGTGCCAATGACGAATCAAGGGGTGTTTCCATATATATTACTCAGAA
TAATCGACACAGTACACCCATGCGATTGGAATTGATAAAATTCTGTCCCT
ATTGTTACAAGCATACACTTCATGGGGAGATAACAAAATAGATTGAGTCA
AGCCTGGTGCTTTTGTGCCACCCTTCCGAGGGACATGACATACTACTCTA
TATGTATATCTACATTATCTCATATATCTTAATGAGAACATATATATAAG
TGTATACATACCAGATGCTATGATCGATGCTATAAATCATTGTTTGATTT
CATCGAAATGAGACTCTACGGATAAGGAATAAACAAATTATGGATAGAAC
CAAGCGACTCATTGCTAAATGCAAGCGATATATGGGTAGGCGGTTGCCCA
CGATCCAATCGTGGATCGAATTGATATACAAACCTGACTTGATTAGTCGA
TTCCTATTGGACAGGGAAAATTTATCTAGGCGGCGAATAGATGGACTTCA
AGAGCACGATCATTCCTATTGCTATAAACAGGCTCGATTTATGTTGGTAC
TTTCTTATATGCCAAA
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