EY659523

Overview
NameEY659523
Unique NameEY659523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_NICSY (50S ribosomal protein L33, chloroplastic OS=Nicotiana sylvestris GN=rpl33 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.376e-20
Identity = 46/66 (69.70%), Postives = 52/66 (78.79%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV + VI+ECT  VRN  +  SRG+S YITQ NRH+TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDVRVTVILECTSCVRNSVDKVSRGISRYITQKNRHNTPNRLELKKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_ATRBE (50S ribosomal protein L33, chloroplastic OS=Atropa belladonna GN=rpl33 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.376e-20
Identity = 46/66 (69.70%), Postives = 52/66 (78.79%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV + VI+ECT  VRN  +  SRG+S YITQ NRH+TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDVRVTVILECTSCVRNSVDKVSRGISRYITQKNRHNTPNRLELKKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_OLIPU (50S ribosomal protein L33, chloroplastic OS=Olimarabidopsis pumila GN=rpl33 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.052e-20
Identity = 45/66 (68.18%), Postives = 51/66 (77.27%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV + +I+ECT  VRN    ES G+S YITQ NRH+TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDVRVTIILECTSCVRNDIKKESSGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_NASOF (50S ribosomal protein L33, chloroplastic OS=Nasturtium officinale GN=rpl33 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.052e-20
Identity = 45/66 (68.18%), Postives = 51/66 (77.27%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV + +I+ECT  VRN    ES G+S YITQ NRH+TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDVRVTIILECTSCVRNDIKKESSGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_DRANE (50S ribosomal protein L33, chloroplastic OS=Draba nemorosa GN=rpl33 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.052e-20
Identity = 45/66 (68.18%), Postives = 51/66 (77.27%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV + +I+ECT  VRN    ES G+S YITQ NRH+TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDVRVTIILECTSCVRNDIKKESAGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_CRUWA (50S ribosomal protein L33, chloroplastic OS=Crucihimalaya wallichii GN=rpl33 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.052e-20
Identity = 45/66 (68.18%), Postives = 51/66 (77.27%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV + +I+ECT  VRN    ES G+S YITQ NRH+TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDVRVTIILECTSCVRNDIKKESAGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_CAPBU (50S ribosomal protein L33, chloroplastic OS=Capsella bursa-pastoris GN=rpl33 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.052e-20
Identity = 45/66 (68.18%), Postives = 51/66 (77.27%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV + +I+ECT  VRN    ES G+S YITQ NRH+TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDVRVTIILECTSCVRNDIKKESAGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_VITVI (50S ribosomal protein L33, chloroplastic OS=Vitis vinifera GN=rpl33 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.293e-20
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA  KD  +RV++ECT  VR G N ES G+S YIT+ NRH+TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKSKDARIRVLLECTSCVRGGVNKESTGISRYITEKNRHNTPGRLELQKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_LIRTU (50S ribosomal protein L33, chloroplastic OS=Liriodendron tulipifera GN=rpl33 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.293e-20
Identity = 47/66 (71.21%), Postives = 51/66 (77.27%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV   VI++CT  VRN  N ESRG S YITQ NRH+TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDVRGIVILQCTSCVRNDFNKESRGTSRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_DAUCA (50S ribosomal protein L33, chloroplastic OS=Daucus carota GN=rpl33 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.293e-20
Identity = 45/66 (68.18%), Postives = 52/66 (78.79%), Query Frame = 3 
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV + VI+ECT  VRNG N  S G+S YIT+ NRH+TP RLEL KFCP+CYKHT+HGEI K
Sbjct:    1 MAKGKDVRITVILECTGCVRNGVNKVSTGISRYITEKNRHNTPNRLELRKFCPFCYKHTMHGEIKK 66
The following BLAST results are available for this feature:
BLAST of EY659523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RK33_NICSY2.376e-2069.7050S ribosomal protein L33, chloroplastic OS=Nicoti... [more]
RK33_ATRBE2.376e-2069.7050S ribosomal protein L33, chloroplastic OS=Atropa... [more]
RK33_OLIPU4.052e-2068.1850S ribosomal protein L33, chloroplastic OS=Olimar... [more]
RK33_NASOF4.052e-2068.1850S ribosomal protein L33, chloroplastic OS=Nastur... [more]
RK33_DRANE4.052e-2068.1850S ribosomal protein L33, chloroplastic OS=Draba ... [more]
RK33_CRUWA4.052e-2068.1850S ribosomal protein L33, chloroplastic OS=Crucih... [more]
RK33_CAPBU4.052e-2068.1850S ribosomal protein L33, chloroplastic OS=Capsel... [more]
RK33_VITVI5.293e-2066.6750S ribosomal protein L33, chloroplastic OS=Vitis ... [more]
RK33_LIRTU5.293e-2071.2150S ribosomal protein L33, chloroplastic OS=Liriod... [more]
RK33_DAUCA5.293e-2068.1850S ribosomal protein L33, chloroplastic OS=Daucus... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-A12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659523 ID=EY659523; Name=EY659523; organism=Citrus sinensis; type=EST; length=916bp
GCAAAGATTACGGAAATCGAAATATGGGGTGGGGCAGAGTATTCTCCACT
ACAATATCCTTAGATGAAATACTGGACTGCGATTCAGCAATATAGTTAGA
AATTCTTGTGTCACTTATTATTTTTTATTGTGAGATCCTATTTATTGACT
ATATTGATTGCAATAAAATCTTTATTTCATAAGTTTTCTTGGAGTGGTTA
GCGACTTCTATTTTTTTGTGCCGACGCTTCTTATTCGTAGCGGGTCGGAA
AATAAAATAGCTGGGTGAATCAAAAACCCCAATGAGGCTGATGGCCAACG
GTAAGGACGTCCTATTAAGGGTTATTGTGGAATGTACTATGAGAGTTCGA
AACGGTGCCAATGACGAATCAAGGGGTGTTTCCATATATATTACTCAGAA
TAATCGACACAGTACACCCATGCGATTGGAATTGATAAAATTCTGTCCCT
ATTGTTACAAGCATACACTTCATGGGGAGATAACAAAATAGATTGAGTCA
AGCCTGGTGCTTTTGTGCCACCCTTCCGAGGGACATGACATACTACTCTA
TATGTATATCTACATTATCTCATATATCTTAATGAGAACATATATATAAG
TGTATACATACCAGATGCTATGATCGATGCTATAAATCATTGTTTGATTT
CATCGAAATGAGACTCTACGGATAAGGAATAAACAAATTATGGATAGAAC
CAAGCGACTCATTGCTAAATGCAAGCGATATATGGGTAGGCGGTTGCCCA
CGATCCAATCGTGGATCGAATTGATATACAAACCTGACTTGATTAGTCGA
TTCCTATTGGACAGGGAAAATTTATCTAGGCGGCGAATAGATGGACTTCA
AGAGCACGATCATTCCTATTGCTATAAACAGGCTCGATTTATGTTGGTAC
TTTCTTATATGCCAAA
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