EY659523

Overview
NameEY659523
Unique NameEY659523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_SACHY (50S ribosomal protein L33, chloroplastic OS=Saccharum hybrid GN=rpl33 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.342e-17
Identity = 42/66 (63.64%), Postives = 47/66 (71.21%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV +RVI+EC   VR G N ES G+S Y TQ NRH+TP +LEL KFC YC KHT H EI K
Sbjct:    1 MAKGKDVRIRVILECISCVRKGTNKESTGISRYSTQKNRHNTPGQLELRKFCRYCRKHTTHNEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_MAIZE (50S ribosomal protein L33, chloroplastic OS=Zea mays GN=rpl33 PE=3 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 9.342e-17
Identity = 42/66 (63.64%), Postives = 47/66 (71.21%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV +RVI+EC   VR G N ES G+S Y TQ NRH+TP +LEL KFC YC KHT H EI K
Sbjct:    1 MAKGKDVRIRVILECISCVRKGTNKESTGISRYSTQKNRHNTPGQLELRKFCRYCRKHTTHNEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_EPIVI (50S ribosomal protein L33, plastid OS=Epifagus virginiana GN=rpl33 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.220e-16
Identity = 40/66 (60.61%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA  KD  + VI+ECT  +RN  N    G+S YITQ NR +TP RLEL KFCPYCYKH +HGEI K
Sbjct:    1 MAKSKDARVAVILECTSCIRNSVNKVLTGISRYITQKNRRNTPNRLELRKFCPYCYKHMIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_BRADI (50S ribosomal protein L33, chloroplastic OS=Brachypodium distachyon GN=rpl33 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.594e-16
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV +RVI+EC   VR GAN+ES G+S Y T+ NRH+TP +LE  KFC YC KHT H EI K
Sbjct:    1 MAKGKDVRIRVILECISCVRKGANEESTGISRYSTEKNRHNTPGQLEFKKFCRYCRKHTTHHEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_LOTJA (50S ribosomal protein L33, chloroplastic OS=Lotus japonicus GN=rpl33 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.637e-16
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKD+ + VI+ECT   +   N ES G+S YITQ NRH+TP RLELIKFCP C KH +H EI K
Sbjct:    1 MAKGKDIRIIVILECTGCDQKSVNKESSGISRYITQKNRHNTPSRLELIKFCPCCRKHMIHAEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_CYCTA (50S ribosomal protein L33, chloroplastic OS=Cycas taitungensis GN=rpl33 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.909e-16
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA G DV +++ +ECT   R+  + +  GVS YITQ NR +TP+R EL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGGDVRVKITLECTSCTRDSVDKKYPGVSRYITQKNRRNTPIRSELKKFCPYCYKHTIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_CUSGR (50S ribosomal protein L33, plastid OS=Cuscuta gronovii GN=rpl33 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.033e-15
Identity = 41/66 (62.12%), Postives = 47/66 (71.21%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            M   K V  ++I+ECT  VRN  N  S+GVS YITQ NRH+TP RLEL KFCP CYKH +HGEI K
Sbjct:    1 MEKKKGVRGKIILECTGCVRNSHNRVSKGVSRYITQKNRHNTPNRLELKKFCPRCYKHIIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_CUSOB (50S ribosomal protein L33, plastid OS=Cuscuta obtusiflora GN=rpl33 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.762e-15
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = 3
Query:  321 VIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            +I+ECT  VRN  N  S+GVS YITQ NRH+TP RLEL KFCP+CYKH +HGEI K
Sbjct:   11 IILECTGCVRNSHNRVSKGVSRYITQKNRHNTPNRLELKKFCPHCYKHIIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_CRYJA (50S ribosomal protein L33, chloroplastic OS=Cryptomeria japonica GN=rpl33 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.301e-15
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA G +V + + +ECT   ++  N +S G+S Y T+ NR +TP+RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGGNVRVTITLECTSCTQDSVNKKSPGISRYTTRKNRRNTPLRLELKKFCPYCYKHTIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_LEMMI (50S ribosomal protein L33, chloroplastic OS=Lemna minor GN=rpl33 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.005e-15
Identity = 41/68 (60.29%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTM--RVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV +RVI+EC    R  NG   E  GVS Y+TQ NRH+TP RLEL KFC YC KHT+H E+ K
Sbjct:    1 MAKGKDVRVRVILECNSCGRNENGVTKEVPGVSRYVTQKNRHNTPSRLELKKFCRYCNKHTIHVEVKK 68          
The following BLAST results are available for this feature:
BLAST of EY659523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RK33_SACHY9.342e-1763.6450S ribosomal protein L33, chloroplastic OS=Saccha... [more]
RK33_MAIZE9.342e-1763.6450S ribosomal protein L33, chloroplastic OS=Zea ma... [more]
RK33_EPIVI1.220e-1660.6150S ribosomal protein L33, plastid OS=Epifagus vir... [more]
RK33_BRADI1.594e-1662.1250S ribosomal protein L33, chloroplastic OS=Brachy... [more]
RK33_LOTJA4.637e-1660.6150S ribosomal protein L33, chloroplastic OS=Lotus ... [more]
RK33_CYCTA7.909e-1657.5850S ribosomal protein L33, chloroplastic OS=Cycas ... [more]
RK33_CUSGR1.033e-1562.1250S ribosomal protein L33, plastid OS=Cuscuta gron... [more]
RK33_CUSOB1.762e-1567.8650S ribosomal protein L33, plastid OS=Cuscuta obtu... [more]
RK33_CRYJA2.301e-1554.5550S ribosomal protein L33, chloroplastic OS=Crypto... [more]
RK33_LEMMI3.005e-1560.2950S ribosomal protein L33, chloroplastic OS=Lemna ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-A12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659523 ID=EY659523; Name=EY659523; organism=Citrus sinensis; type=EST; length=916bp
GCAAAGATTACGGAAATCGAAATATGGGGTGGGGCAGAGTATTCTCCACT
ACAATATCCTTAGATGAAATACTGGACTGCGATTCAGCAATATAGTTAGA
AATTCTTGTGTCACTTATTATTTTTTATTGTGAGATCCTATTTATTGACT
ATATTGATTGCAATAAAATCTTTATTTCATAAGTTTTCTTGGAGTGGTTA
GCGACTTCTATTTTTTTGTGCCGACGCTTCTTATTCGTAGCGGGTCGGAA
AATAAAATAGCTGGGTGAATCAAAAACCCCAATGAGGCTGATGGCCAACG
GTAAGGACGTCCTATTAAGGGTTATTGTGGAATGTACTATGAGAGTTCGA
AACGGTGCCAATGACGAATCAAGGGGTGTTTCCATATATATTACTCAGAA
TAATCGACACAGTACACCCATGCGATTGGAATTGATAAAATTCTGTCCCT
ATTGTTACAAGCATACACTTCATGGGGAGATAACAAAATAGATTGAGTCA
AGCCTGGTGCTTTTGTGCCACCCTTCCGAGGGACATGACATACTACTCTA
TATGTATATCTACATTATCTCATATATCTTAATGAGAACATATATATAAG
TGTATACATACCAGATGCTATGATCGATGCTATAAATCATTGTTTGATTT
CATCGAAATGAGACTCTACGGATAAGGAATAAACAAATTATGGATAGAAC
CAAGCGACTCATTGCTAAATGCAAGCGATATATGGGTAGGCGGTTGCCCA
CGATCCAATCGTGGATCGAATTGATATACAAACCTGACTTGATTAGTCGA
TTCCTATTGGACAGGGAAAATTTATCTAGGCGGCGAATAGATGGACTTCA
AGAGCACGATCATTCCTATTGCTATAAACAGGCTCGATTTATGTTGGTAC
TTTCTTATATGCCAAA
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