EY659475

Overview
NameEY659475
Unique NameEY659475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB2_EMENI (Tubulin beta-2 chain OS=Emericella nidulans GN=tubC PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.772e-17
Identity = 40/122 (32.79%), Postives = 70/122 (57.38%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +++ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ A   + NSTSV E+F+R+ ++F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RFLTCSTLFRGKVAMKEVEDQMRNMQNKYSSYFVEWIPNNVQTALCSMPPK--------GLKMAATFVGNSTSVQELFNRVSNQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLMSEY 422          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB2_ARATH (Tubulin beta-2/beta-3 chain OS=Arabidopsis thaliana GN=TUBB2 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.772e-17
Identity = 42/122 (34.43%), Postives = 69/122 (56.56%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT         ++ A   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB1_PHYPO (Tubulin beta-1 chain OS=Physarum polycephalum GN=BETA PE=1 SV=4)

HSP 1 Score: 89.3521 bits (220), Expect = 1.772e-17
Identity = 41/122 (33.61%), Postives = 69/122 (56.56%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ AV  I NST++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPK--------GLKMAVTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB1_LUPAL (Tubulin beta-1 chain OS=Lupinus albus GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.772e-17
Identity = 42/122 (34.43%), Postives = 69/122 (56.56%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT         ++ A   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB2_WHEAT (Tubulin beta-2 chain OS=Triticum aestivum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.314e-17
Identity = 41/122 (33.61%), Postives = 68/122 (55.74%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT         +  A   + NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPT--------GLSMASTFVGNSTSIQEMFRRVSEQFTSMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB2_GEOCN (Tubulin beta-2 chain OS=Geotrichum candidum PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.314e-17
Identity = 44/122 (36.07%), Postives = 69/122 (56.56%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    ++RG V  K+V  A+ T +TK +  FV+W P   +  +   PP          +  +   I+NST+V E+F R  ++F +M+ ++ F+HWY GEGME  EFSEA+ DL  L  +Y
Sbjct:  311 RYLTISTIFRGQVAMKEVEDAIHTARTKYSPYFVEWIPNNVQTSVCNVPPK--------GLTTSATFIANSTAVQELFERTANQFSVMFKRKGFLHWYTGEGMEPVEFSEAQSDLEDLILEY 424          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB1_PEA (Tubulin beta-1 chain OS=Pisum sativum GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.314e-17
Identity = 42/122 (34.43%), Postives = 69/122 (56.56%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT         ++ A   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEY 422          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB_ACRCO (Tubulin beta chain OS=Acremonium coenophialum GN=TUB2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.022e-17
Identity = 40/122 (32.79%), Postives = 68/122 (55.74%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTCSAIFRGKVAMKEVEDQMRNVQNKNSSYFVEWIPNNIQTALCAIPPR--------DLKMSSTFIGNSTSIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB2_SOYBN (Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.022e-17
Identity = 42/122 (34.43%), Postives = 69/122 (56.56%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT         ++ A   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSTVCDIPPT--------GLRMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB_RHYSE (Tubulin beta chain OS=Rhynchosporium secalis PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 41/122 (33.61%), Postives = 69/122 (56.56%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+ C  ++RG V  K+V   +  ++ K +  FV+W PT  +  +   PP          ++ +   + NSTS+ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTCSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPTNVQTALCSIPPR--------GLKMSSTFVGNSTSIQELFKRIGDQFTRMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
The following BLAST results are available for this feature:
BLAST of EY659475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 376
Match NameE-valueIdentityDescription
TBB2_EMENI1.772e-1732.79Tubulin beta-2 chain OS=Emericella nidulans GN=tub... [more]
TBB2_ARATH1.772e-1734.43Tubulin beta-2/beta-3 chain OS=Arabidopsis thalian... [more]
TBB1_PHYPO1.772e-1733.61Tubulin beta-1 chain OS=Physarum polycephalum GN=B... [more]
TBB1_LUPAL1.772e-1734.43Tubulin beta-1 chain OS=Lupinus albus GN=TUBB1 PE=... [more]
TBB2_WHEAT2.314e-1733.61Tubulin beta-2 chain OS=Triticum aestivum GN=TUBB2... [more]
TBB2_GEOCN2.314e-1736.07Tubulin beta-2 chain OS=Geotrichum candidum PE=3 S... [more]
TBB1_PEA2.314e-1734.43Tubulin beta-1 chain OS=Pisum sativum GN=TUBB1 PE=... [more]
TBB_ACRCO3.022e-1732.79Tubulin beta chain OS=Acremonium coenophialum GN=T... [more]
TBB2_SOYBN3.022e-1734.43Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 ... [more]
TBB_RHYSE3.947e-1733.61Tubulin beta chain OS=Rhynchosporium secalis PE=3 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-E09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659475 ID=EY659475; Name=EY659475; organism=Citrus sinensis; type=EST; length=644bp
GCAAGTATATGGCCTGCTGTTTGATGTATCGCGGTGATGTTGTGCCTAAG
GATGTGAATGCAGCTGTGGCCACCATCAAGACCAAGCGCACAATTCAGTT
TGTTGACTGGTGCCCTACTGGATTCAAGTGTGGTATCAACTATCAGCCAC
CAACTGTGGTCCCTGGCGGTGACCTTGCCAAGGTGCAGAGGGCTGTCTGC
ATGATTTCCAACTCCACCAGCGTTGCTGAAGTGTTTTCTCGCATTGATCA
CAAGTTTGACCTAATGTATGCCAAGCGTGCTTTTGTGCACTGGTATGTTG
GTGAGGGAATGGAGGAAGGAGAGTTCTCTGAGGCCCGTGAGGATCTTGCT
GCCCTGGAGAAGGATTATGAAGAGGTTGGTGCAGAATCTGCTGAGGGGGA
GGATGGCGACGAAGGAGATGAATATTAATTGTGTTTGTGCACTGATAAGG
GATGTGCCATCTTTCCTTTCTTATGTTGTTCTGGATGATGTTGTCCAATA
ATGTTGGGGGTGTTCTAAGTGCCTTTGCACTGACATTNTAATTGATTTCT
TAAGACTTGGTTGATTATGGTATCGGTAACCGTGGCCCATGGCTCTTGCT
TATAAAATTGCTTTTTNGAANAAAAAAAANNAAANAAAAAAAAA
back to top