EY659475

Overview
NameEY659475
Unique NameEY659475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB_VENIN (Tubulin beta chain OS=Venturia inaequalis PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.166e-15
Identity = 38/122 (31.15%), Postives = 67/122 (54.92%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   + NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTSSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPPR--------GLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB1_HUMAN (Tubulin beta-1 chain OS=Homo sapiens GN=TUBB1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.166e-15
Identity = 37/122 (30.33%), Postives = 66/122 (54.10%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    ++RG +  K+V+  + +++T+ +  FV+W P   K  +   PP          +  A   I N+T++ E+F+R+   F  M+ ++AFVHWY  EGM+  EF EA  ++  L  +Y
Sbjct:  309 RYLTVACIFRGKMSTKEVDQQLLSVQTRNSSCFVEWIPNNVKVAVCDIPPR--------GLSMAATFIGNNTAIQEIFNRVSEHFSAMFKRKAFVHWYTSEGMDINEFGEAENNIHDLVSEY 422          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB_HALDI (Tubulin beta chain (Fragment) OS=Haliotis discus PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.828e-15
Identity = 37/115 (32.17%), Postives = 65/115 (56.52%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 347
            +Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ +   I NST++ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  235 RYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPR--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 341          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB8_PANTR (Tubulin beta-8 chain OS=Pan troglodytes GN=TUBB8 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.828e-15
Identity = 37/122 (30.33%), Postives = 67/122 (54.92%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    ++RG +  ++V+  +  I+ K +  F DW P   K  +   PP          ++ +   I N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTAAAIFRGRMPMREVDEQMFNIQDKNSSYFADWLPNNVKTAVCDIPPR--------GLKMSATFIGNNTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB8_HUMAN (Tubulin beta-8 chain OS=Homo sapiens GN=TUBB8 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.828e-15
Identity = 37/122 (30.33%), Postives = 67/122 (54.92%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    ++RG +  ++V+  +  I+ K +  F DW P   K  +   PP          ++ +   I N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTAAAIFRGRMPMREVDEQMFNIQDKNSSYFADWLPNNVKTAVCDIPPR--------GLKMSATFIGNNTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB2_HOMAM (Tubulin beta-2 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.828e-15
Identity = 38/122 (31.15%), Postives = 68/122 (55.74%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    ++RG +  ++V+  +  I+ K +  FV+W P   K  +   PP          ++ +   I NST++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  314 RYLTVAAIFRGRMSMREVDDQMYNIQNKNSSFFVEWIPNNVKTAVCDIPPR--------GLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 427          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB8_PAPHA (Tubulin beta-8 chain OS=Papio hamadryas GN=TUBB8 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.694e-15
Identity = 37/122 (30.33%), Postives = 67/122 (54.92%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    ++RG +  ++V+  +  I+ K +  F DW P   K  +   PP          ++ +   I N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTAAAIFRGRMPMREVDEQMFNIQNKNSSYFADWLPHNVKTAVCDIPPR--------GLKMSATFIGNNTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB_LEIME (Tubulin beta chain OS=Leishmania mexicana PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.825e-15
Identity = 37/122 (30.33%), Postives = 67/122 (54.92%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    ++RG +  K+V+  +  ++ K +  F++W P   K  I   PP          ++ +V  I N+T + E+F R+  +F  M+ ++ F+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  311 RYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFIEWIPNNIKSSICDIPPK--------GLKMSVTFIGNNTCIQEMFRRVGEQFTGMFRRKRFLHWYTGEGMDEMEFTEAESNMNDLVSEY 424          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB_AJECA (Tubulin beta chain OS=Ajellomyces capsulata GN=TUB2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.301e-15
Identity = 37/122 (30.33%), Postives = 66/122 (54.10%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    ++RG V  K+V   +  ++ K    FV+W P   +  +   PP          ++ +   + NST++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  310 RYLTASAIFRGKVSMKEVEDQMRNVQNKNHTYFVEWIPNNVQTALCSIPPR--------GLKMSSTFVENSTAIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 423          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB1_GEOCN (Tubulin beta-1 chain OS=Geotrichum candidum PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.301e-15
Identity = 38/122 (31.15%), Postives = 66/122 (54.10%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+     +RG V  K+V   + +++ + +  FV+W P   +  I   PP          V+ +   I+NSTS+ E+F R+  +F  M+ ++AF+HWY  EGM+  EF+EA  ++  L  +Y
Sbjct:  309 RYLTVAAFFRGKVSIKEVEDQMRSVQERNSAYFVEWIPNNVQTAICSVPPK--------DVKMSATFIANSTSIQELFKRVGDQFSAMFRRKAFLHWYTNEGMDITEFAEAESNMNDLVSEY 422          
The following BLAST results are available for this feature:
BLAST of EY659475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 376
Match NameE-valueIdentityDescription
TBB_VENIN2.166e-1531.15Tubulin beta chain OS=Venturia inaequalis PE=3 SV=... [more]
TBB1_HUMAN2.166e-1530.33Tubulin beta-1 chain OS=Homo sapiens GN=TUBB1 PE=1... [more]
TBB_HALDI2.828e-1532.17Tubulin beta chain (Fragment) OS=Haliotis discus P... [more]
TBB8_PANTR2.828e-1530.33Tubulin beta-8 chain OS=Pan troglodytes GN=TUBB8 P... [more]
TBB8_HUMAN2.828e-1530.33Tubulin beta-8 chain OS=Homo sapiens GN=TUBB8 PE=1... [more]
TBB2_HOMAM2.828e-1531.15Tubulin beta-2 chain OS=Homarus americanus PE=2 SV... [more]
TBB8_PAPHA3.694e-1530.33Tubulin beta-8 chain OS=Papio hamadryas GN=TUBB8 P... [more]
TBB_LEIME4.825e-1530.33Tubulin beta chain OS=Leishmania mexicana PE=3 SV=... [more]
TBB_AJECA6.301e-1530.33Tubulin beta chain OS=Ajellomyces capsulata GN=TUB... [more]
TBB1_GEOCN6.301e-1531.15Tubulin beta-1 chain OS=Geotrichum candidum PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-E09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659475 ID=EY659475; Name=EY659475; organism=Citrus sinensis; type=EST; length=644bp
GCAAGTATATGGCCTGCTGTTTGATGTATCGCGGTGATGTTGTGCCTAAG
GATGTGAATGCAGCTGTGGCCACCATCAAGACCAAGCGCACAATTCAGTT
TGTTGACTGGTGCCCTACTGGATTCAAGTGTGGTATCAACTATCAGCCAC
CAACTGTGGTCCCTGGCGGTGACCTTGCCAAGGTGCAGAGGGCTGTCTGC
ATGATTTCCAACTCCACCAGCGTTGCTGAAGTGTTTTCTCGCATTGATCA
CAAGTTTGACCTAATGTATGCCAAGCGTGCTTTTGTGCACTGGTATGTTG
GTGAGGGAATGGAGGAAGGAGAGTTCTCTGAGGCCCGTGAGGATCTTGCT
GCCCTGGAGAAGGATTATGAAGAGGTTGGTGCAGAATCTGCTGAGGGGGA
GGATGGCGACGAAGGAGATGAATATTAATTGTGTTTGTGCACTGATAAGG
GATGTGCCATCTTTCCTTTCTTATGTTGTTCTGGATGATGTTGTCCAATA
ATGTTGGGGGTGTTCTAAGTGCCTTTGCACTGACATTNTAATTGATTTCT
TAAGACTTGGTTGATTATGGTATCGGTAACCGTGGCCCATGGCTCTTGCT
TATAAAATTGCTTTTTNGAANAAAAAAAANNAAANAAAAAAAAA
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