EY659475

Overview
NameEY659475
Unique NameEY659475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB_SCHCO (Tubulin beta chain OS=Schizophyllum commune GN=TUB-2 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.075e-14
Identity = 38/122 (31.15%), Postives = 67/122 (54.92%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    M+RG V  K+V   +  ++ K +  FV+W P      +      + P G    ++ +V  + NST++ E+F R+  +F  M+ ++AF+HWY  EGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTVAAMFRGKVSMKEVEEQMQNVQNKNSAYFVEWIPNN----VLASQCDIAPRG----LRMSVTFLGNSTAIQELFKRVSDQFTAMFKRKAFLHWYTQEGMDEMEFTEAESNMQDLVAEY 422          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB_MELLI (Tubulin beta chain OS=Melampsora lini GN=TUB1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.075e-14
Identity = 39/122 (31.97%), Postives = 69/122 (56.56%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+     +RG V  K+V   + ++++K +  FV+W P      +      + P G    ++ +V  I NST++ ++F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTVAAYFRGKVSMKEVEENMLSVQSKNSNYFVEWIPNN----VQTAHCDIAPRG----LKMSVTFIGNSTAIQDLFKRIADQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMQDLVAEY 422          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB3_SOYBN (Tubulin beta chain (Fragment) OS=Glycine max GN=TUBB PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.075e-14
Identity = 37/108 (34.26%), Postives = 60/108 (55.56%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEF 326
            +Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ A   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF
Sbjct:  309 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF 408          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB3_ECHMU (Tubulin beta-3 chain OS=Echinococcus multilocularis GN=TUB-3 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.075e-14
Identity = 40/122 (32.79%), Postives = 66/122 (54.10%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    MYRG V  K+V   +   +T+ +  FV+W P   K  +   PP           + A   I N+T++ E+F+R+  +F  M+ +RAF+H++  EGM+E EFSEA  ++  L  +Y
Sbjct:  309 RYLTVAAMYRGRVSMKEVEDRILETQTRNSTYFVEWIPNNVKTAVCDIPPI--------DFKVAGTFIGNTTAIQELFTRVSDQFSAMFRRRAFLHFFTSEGMDEMEFSEAESNMNDLISEY 422          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB_COPC7 (Tubulin beta chain OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_04743 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.833e-14
Identity = 38/122 (31.15%), Postives = 65/122 (53.28%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    ++RG V  K+V   +  ++ K +  FV+W P          PP          ++ AV  + NST++ E+F R+  +F  M+ ++AF+HWY  EGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTVAAVFRGKVSMKEVEEQMQNVQNKNSAYFVEWIPNNVLTAQCDIPPR--------GLKMAVTFLGNSTAIQELFKRVSDQFTAMFKRKAFLHWYTQEGMDEMEFTEAESNMQDLVAEY 422          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB1_SUIBO (Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.833e-14
Identity = 39/122 (31.97%), Postives = 64/122 (52.46%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    ++RG V  K+V   +  ++ K +  FV+W P          PP          V+ AV  + NST++ E+F R+   F  M+ ++AF+HWY  EGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTVAAVFRGKVSMKEVEEQMQNVQNKNSAYFVEWIPNNVLSAQCDIPPR--------GVKMAVTFLGNSTAIQELFKRVSDHFTAMFKRKAFLHWYTQEGMDEMEFTEAESNMQDLIAEY 422          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB_PLESA (Tubulin beta chain OS=Pleurotus sajor-caju PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.127e-14
Identity = 38/122 (31.15%), Postives = 65/122 (53.28%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    ++RG V  K+V   +  ++ K +  FV+W P          PP           + AV  + NST++ E+F R++ +F  M+ ++AF+HWY  EGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTVAAVFRGKVSMKEVEEQMQNVQNKNSAYFVEWIPNNVLTAQCDIPPR--------GCKMAVTFLGNSTAIQELFKRVNDQFAAMFKRKAFLHWYTQEGMDEMEFTEAESNMQDLVAEY 422          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB1_CHOCR (Tubulin beta-1 chain OS=Chondrus crispus GN=TUBB PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.127e-14
Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+   + +RG V  K+V   +  ++TK +  FV+W P   K  +   P      G+  K+  A   I N+T++   F R  ++F  M+ ++AF+HWY  EGM+E EFSEA  +LA L  +Y
Sbjct:  311 RYLTAAVYFRGKVSTKEVEDEMTLMQTKNSAYFVEWIPHNIKTSVCDIPAA----GE--KISSA--FIGNTTAIEATFKRFGNQFRSMFRRKAFLHWYKSEGMDELEFSEAESNLADLVSEY 424          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBB_UROFA (Tubulin beta chain OS=Uromyces fabae GN=TBB1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.552e-13
Identity = 37/122 (30.33%), Postives = 66/122 (54.10%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+     +RG V  K+V   + +++ K +  FV+W P      +      + P       + +V  I NST++ ++F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  309 RYLTVAAYFRGKVSMKEVEENMLSVQNKNSNYFVEWIPNN----VQTAHCDIAPRAH----KMSVTFIGNSTAIQDLFKRVADQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMQDLVAEY 422          
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: YI016_HUMAN (Putative tubulin beta chain-like protein ENSP00000290377 OS=Homo sapiens PE=5 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.647e-13
Identity = 35/122 (28.69%), Postives = 66/122 (54.10%), Query Frame = 3
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            +Y+    +++G +  ++V+  +  I+ K +  F DW P   K  I   PP          ++ +   I N+ ++ E+F+ +  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  237 RYLTAAAIFQGRMPMREVDEQMFNIQDKNSSYFADWFPDNVKTAICDIPPR--------GLKMSASFIGNNAAIQELFTCVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 350          
The following BLAST results are available for this feature:
BLAST of EY659475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 376
Match NameE-valueIdentityDescription
TBB_SCHCO1.075e-1431.15Tubulin beta chain OS=Schizophyllum commune GN=TUB... [more]
TBB_MELLI1.075e-1431.97Tubulin beta chain OS=Melampsora lini GN=TUB1 PE=3... [more]
TBB3_SOYBN1.075e-1434.26Tubulin beta chain (Fragment) OS=Glycine max GN=TU... [more]
TBB3_ECHMU1.075e-1432.79Tubulin beta-3 chain OS=Echinococcus multiloculari... [more]
TBB_COPC71.833e-1431.15Tubulin beta chain OS=Coprinopsis cinerea (strain ... [more]
TBB1_SUIBO1.833e-1431.97Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 P... [more]
TBB_PLESA3.127e-1431.15Tubulin beta chain OS=Pleurotus sajor-caju PE=2 SV... [more]
TBB1_CHOCR3.127e-1434.43Tubulin beta-1 chain OS=Chondrus crispus GN=TUBB P... [more]
TBB_UROFA1.552e-1330.33Tubulin beta chain OS=Uromyces fabae GN=TBB1 PE=3 ... [more]
YI016_HUMAN2.647e-1328.69Putative tubulin beta chain-like protein ENSP00000... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-E09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659475 ID=EY659475; Name=EY659475; organism=Citrus sinensis; type=EST; length=644bp
GCAAGTATATGGCCTGCTGTTTGATGTATCGCGGTGATGTTGTGCCTAAG
GATGTGAATGCAGCTGTGGCCACCATCAAGACCAAGCGCACAATTCAGTT
TGTTGACTGGTGCCCTACTGGATTCAAGTGTGGTATCAACTATCAGCCAC
CAACTGTGGTCCCTGGCGGTGACCTTGCCAAGGTGCAGAGGGCTGTCTGC
ATGATTTCCAACTCCACCAGCGTTGCTGAAGTGTTTTCTCGCATTGATCA
CAAGTTTGACCTAATGTATGCCAAGCGTGCTTTTGTGCACTGGTATGTTG
GTGAGGGAATGGAGGAAGGAGAGTTCTCTGAGGCCCGTGAGGATCTTGCT
GCCCTGGAGAAGGATTATGAAGAGGTTGGTGCAGAATCTGCTGAGGGGGA
GGATGGCGACGAAGGAGATGAATATTAATTGTGTTTGTGCACTGATAAGG
GATGTGCCATCTTTCCTTTCTTATGTTGTTCTGGATGATGTTGTCCAATA
ATGTTGGGGGTGTTCTAAGTGCCTTTGCACTGACATTNTAATTGATTTCT
TAAGACTTGGTTGATTATGGTATCGGTAACCGTGGCCCATGGCTCTTGCT
TATAAAATTGCTTTTTNGAANAAAAAAAANNAAANAAAAAAAAA
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