EY659470

Overview
NameEY659470
Unique NameEY659470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659470 vs. ExPASy Swiss-Prot
Match: TDH_SHEB8 (L-threonine 3-dehydrogenase OS=Shewanella baltica (strain OS185) GN=tdh PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.504e-18
Identity = 55/159 (34.59%), Postives = 86/159 (54.09%), Query Frame = 1
Query:   28 GSLPNQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTV 501
            GS    +V PA   FK+PD++S +  ++ +P    +H     ++  E +VLI GAGPIG++     R  GA  +VI DV++YRL +A+++GA   V VS  NL+D+ +E+      M  G DV  + +G        L     GGKV ++G+   EM +
Sbjct:  119 GSFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELARKMGATRAVNVSKENLKDVMKEL-----GMTEGFDVGLEMSGVPSAFHAMLDTMNHGGKVAMLGIPSGEMAI 271          
BLAST of EY659470 vs. ExPASy Swiss-Prot
Match: TDH_SHEPC (L-threonine 3-dehydrogenase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=tdh PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.495e-18
Identity = 55/159 (34.59%), Postives = 86/159 (54.09%), Query Frame = 1
Query:   28 GSLPNQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTV 501
            GS    +V PA   FK+PD++S +  ++ +P    +H     ++  E +VLI GAGPIG++     R  GA  +VI DV++YRL +A+++GA   V VS  NL+D+ +E+      M  G DV  + +G        L     GGKV ++G+   EM +
Sbjct:  119 GSFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELARKMGATRAVNVSKENLKDVMKEL-----GMTEGFDVGLEMSGVPSAFHAMLDTMNHGGKVAMLGIPGGEMAI 271          
BLAST of EY659470 vs. ExPASy Swiss-Prot
Match: TDH_SERP5 (L-threonine 3-dehydrogenase OS=Serratia proteamaculans (strain 568) GN=tdh PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.495e-18
Identity = 53/159 (33.33%), Postives = 87/159 (54.72%), Query Frame = 1
Query:   28 GSLPNQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTV 501
            GS    +V PA   FK+PDN+S E  ++ +P    +H     ++  E +VL+ GAGPIG++     +  GA  +VI DV++YRL +A+++G    V VS  NL D+  E+      M  G DV  + +G      T L+A   GG++ ++G+   +M++
Sbjct:  119 GSFAEYLVIPAFNAFKIPDNISDELASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCKHVGARHVVITDVNEYRLDLARKMGVTRAVNVSKENLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRTLLNAMNHGGRIAMLGIPPSDMSI 271          
BLAST of EY659470 vs. ExPASy Swiss-Prot
Match: TDH_ENTS8 (L-threonine 3-dehydrogenase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=tdh PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 9.203e-18
Identity = 51/159 (32.08%), Postives = 87/159 (54.72%), Query Frame = 1
Query:   28 GSLPNQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTV 501
            G     +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRLS+A+++G    V V+  +LQD+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++
Sbjct:  119 GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLSLARKMGVTRAVNVANESLQDVMNEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSI 271          

HSP 2 Score: 22.7126 bits (47), Expect = 9.203e-18
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 2
Query:  563 TWPLCLEFLXSGKIDVKPLITHR 631
            TW      + SG +D+ P+ITHR
Sbjct:  294 TWYKMAALIQSG-LDLSPIITHR 315          
BLAST of EY659470 vs. ExPASy Swiss-Prot
Match: TDH_ALTMD (L-threonine 3-dehydrogenase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=tdh PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.109e-17
Identity = 53/159 (33.33%), Postives = 87/159 (54.72%), Query Frame = 1
Query:   28 GSLPNQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTV 501
            G+    +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VLI GAGPIG++    A+  GA  +V+ D++ YRL +AK++GA   V VS  NLQD+ +E+      M  G DV  + +G        L+    GGK+ ++G+   ++ V
Sbjct:  119 GAFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVVTDINPYRLELAKKMGATRTVDVSKENLQDVMDEL-----GMSEGFDVGLEMSGVPVAFRDMLNKMNHGGKIAMLGIPPQDVAV 271          
BLAST of EY659470 vs. ExPASy Swiss-Prot
Match: TDH_ANADF (L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=tdh PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.196e-17
Identity = 52/153 (33.99%), Postives = 81/153 (52.94%), Query Frame = 1
Query:   28 GSLPNQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVSTNLQDIAEEVEKIQKAMG--TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM 480
            GS    VV PAD  +++PD++  E  A+ +P     H      +  E +VL+ GAGPIG++ +  AR  GA  +V+ DV+DYRL +A+ +GA   V V+       E++  + K +G   G DV  + +G  +     L A   G KV L+G+
Sbjct:  120 GSFAEYVVIPADNVYRIPDDIPDEVAAIFDPYGNATHTALSFELVGE-DVLVTGAGPIGVMAVSIARHVGARHVVVTDVNDYRLGLARRMGATRAVNVA------REDLRAVMKDLGMKEGFDVGLEMSGNGRAFRQMLEAMNHGAKVALLGI 265          

HSP 2 Score: 24.6386 bits (52), Expect = 1.196e-17
Identity = 11/23 (47.83%), Postives = 15/23 (65.22%), Query Frame = 2
Query:  563 TWPLCLEFLXSGKIDVKPLITHR 631
            TW   +  L SG +D+ P+ITHR
Sbjct:  295 TWYKMVAMLQSG-LDISPVITHR 316          
BLAST of EY659470 vs. ExPASy Swiss-Prot
Match: TDH_ECOLI (L-threonine 3-dehydrogenase OS=Escherichia coli (strain K12) GN=tdh PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.556e-17
Identity = 52/162 (32.10%), Postives = 86/162 (53.09%), Query Frame = 1
Query:   28 GSLPNQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLT 510
            G     +V PA   FK+PDN+S +  A+ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V+  NL D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T
Sbjct:  119 GCFAEYLVIPAFNAFKIPDNISDDLAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKMGITRAVNVAKENLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWT 274          

HSP 2 Score: 22.7126 bits (47), Expect = 1.556e-17
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 2
Query:  563 TWPLCLEFLXSGKIDVKPLITHR 631
            TW      + SG +D+ P+ITHR
Sbjct:  294 TWYKMAALIQSG-LDLSPIITHR 315          
BLAST of EY659470 vs. ExPASy Swiss-Prot
Match: TDH_ECODH (L-threonine 3-dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=tdh PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.556e-17
Identity = 52/162 (32.10%), Postives = 86/162 (53.09%), Query Frame = 1
Query:   28 GSLPNQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLT 510
            G     +V PA   FK+PDN+S +  A+ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V+  NL D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T
Sbjct:  119 GCFAEYLVIPAFNAFKIPDNISDDLAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKMGITRAVNVAKENLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWT 274          

HSP 2 Score: 22.7126 bits (47), Expect = 1.556e-17
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 2
Query:  563 TWPLCLEFLXSGKIDVKPLITHR 631
            TW      + SG +D+ P+ITHR
Sbjct:  294 TWYKMAALIQSG-LDLSPIITHR 315          
BLAST of EY659470 vs. ExPASy Swiss-Prot
Match: TDH_ECOBW (L-threonine 3-dehydrogenase OS=Escherichia coli (strain K12 / BW2952) GN=tdh PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.556e-17
Identity = 52/162 (32.10%), Postives = 86/162 (53.09%), Query Frame = 1
Query:   28 GSLPNQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLT 510
            G     +V PA   FK+PDN+S +  A+ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V+  NL D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T
Sbjct:  119 GCFAEYLVIPAFNAFKIPDNISDDLAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKMGITRAVNVAKENLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWT 274          

HSP 2 Score: 22.7126 bits (47), Expect = 1.556e-17
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 2
Query:  563 TWPLCLEFLXSGKIDVKPLITHR 631
            TW      + SG +D+ P+ITHR
Sbjct:  294 TWYKMAALIQSG-LDLSPIITHR 315          
BLAST of EY659470 vs. ExPASy Swiss-Prot
Match: TDH_PSEHT (L-threonine 3-dehydrogenase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=tdh PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.892e-17
Identity = 53/159 (33.33%), Postives = 89/159 (55.97%), Query Frame = 1
Query:   28 GSLPNQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTV 501
            G+    +V PA   FK+PDN+S E  ++ +P    +H     ++  E +VLI GAGPIG++    A+  GA  +VI DV++YRL +A+++GA   V V+   L+D+ +E+      M  G D+  + +G     ++ L+    GGKV ++G+   +M V
Sbjct:  119 GAFAEYLVIPAFNAFKIPDNISDELASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVISDVNEYRLELARKMGATRAVNVANEKLEDVIKEL-----GMTEGFDIGLEMSGVPSAFNSMLNNMNHGGKVAMLGIPPSDMAV 271          
The following BLAST results are available for this feature:
BLAST of EY659470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
TDH_SHEB86.504e-1834.59L-threonine 3-dehydrogenase OS=Shewanella baltica ... [more]
TDH_SHEPC8.495e-1834.59L-threonine 3-dehydrogenase OS=Shewanella putrefac... [more]
TDH_SERP58.495e-1833.33L-threonine 3-dehydrogenase OS=Serratia proteamacu... [more]
TDH_ENTS89.203e-1832.08L-threonine 3-dehydrogenase OS=Enterobacter sakaza... [more]
TDH_ALTMD1.109e-1733.33L-threonine 3-dehydrogenase OS=Alteromonas macleod... [more]
TDH_ANADF1.196e-1733.99L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp... [more]
TDH_ECOLI1.556e-1732.10L-threonine 3-dehydrogenase OS=Escherichia coli (s... [more]
TDH_ECODH1.556e-1732.10L-threonine 3-dehydrogenase OS=Escherichia coli (s... [more]
TDH_ECOBW1.556e-1732.10L-threonine 3-dehydrogenase OS=Escherichia coli (s... [more]
TDH_PSEHT1.892e-1733.33L-threonine 3-dehydrogenase OS=Pseudoalteromonas h... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-E04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659470 ID=EY659470; Name=EY659470; organism=Citrus sinensis; type=EST; length=917bp
AAATTTTTTTTTTCTCCGCCCGTTCATGGTTCCCTGCCTAATCAGGTGGT
GCATCCTGCAGACCTATGTTTTAAGCTGCCGGACAATGTGAGCCTGGAGG
AAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTCTTCATGCCTGCCGCCGT
GCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGAGCAGGGCCCAT
AGGACTTGTCACAATGCTAGGAGCTCGTGCTTTTGGAGCTCCTAGAATTG
TCATTGTGGATGTGGATGACTATCGTTTATCTGTTGCAAAGGAACTTGGT
GCAGATAATATTGTTAAAGTTTCAACAAATTTGCAGGACATAGCTGAAGA
AGTGGAAAAGATACAGAAAGCCATGGGGACAGGAATAGATGTGAGCTTTG
ATTGTGCAGGCTTTAACAAAACCATGTCAACAGCACTGAGTGCTACTCGT
GCAGGTGGTAAAGTTTGCCTCGTGGGGATGGGTCATCATGAAATGACTGT
CCCACTCACTCCGGCTGCTGCAAGGGATGTGGATGTGGTGGGGGGTGTTT
CGCTACATGAACACCTGGCCACTGTGTCTGGAGTTCCTTANAAGCGGAAA
GATTGATGTAAAGCCCCTTATCACGCATAGGGTTTGGTTTCTNCCAGAAA
GAAGTGGAAGAAGGCCTTGAAACAGTGCTCGTGGTGGTACTGGCATCAAA
GTCATGTTTAATCTGTAAATACAACGTAAGTAAACGTTTGGGCAAAGATG
AAATAAAATGAATTGCCGCCGAGTATATGAATAAAAGGGTAGCTATACTT
ATTTCTATCTATTACAAAATAAATCAGATTTCTCAAAAAAAAAAAAAAGG
CCGGCCGCTTATAAGATACAGCTTATACCCTGGCTGCAACGTTTAACTTT
TTATATGGCACCTAATT
back to top