EY659467

Overview
NameEY659467
Unique NameEY659467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5170 contig Csv1_Contig5170:159..1042. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_CHICK (Aminomethyltransferase, mitochondrial OS=Gallus gallus GN=AMT PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 6.944e-46
Identity = 101/221 (45.70%), Postives = 131/221 (59.28%), Query Frame = 2
Query:  149 KKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFGEFRILDINGVSSL-LTXTGSTGEDGFEISVPS 808
            +  +ARRH +S  E LK+T L   H A GG+MVPFAGWS+P+QY    +ES L+ R++ SLFDVSHM    + G+D V FLE LV+ D+A L PG GTLT+ TNE G  +DD ++T   +DH+Y+V NAGC DKD A +E       A GGDV   +  +R+               L  DDL+KL F       + GV    +T  G TGEDG EISVP+
Sbjct:    7 RAALARRHLSSAPEGLKQTPLDALHRARGGRMVPFAGWSLPVQYGRGHLESHLHTRRHCSLFDVSHMLQTRVYGRDRVRFLESLVVGDIAELRPGQGTLTLLTNERGDIVDDLIVTNTAEDHLYVVSNAGCADKDRAVMEGRAAELRAAGGDVHLEVSGQRAAGVQGPSMAQVLQAGL-PDDLTKLTFMTSTATTVFGVPGCRVTRCGYTGEDGVEISVPA 226          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_CANFA (Aminomethyltransferase, mitochondrial OS=Canis familiaris GN=AMT PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.878e-45
Identity = 102/230 (44.35%), Postives = 143/230 (62.17%), Query Frame = 2
Query:  194 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFGEFRILDINGVSSL-LTXTGSTGEDGFEISVPSEPAGGPXQAILKNLKEGEVAGLVA 880
            L++T L+DFH+A+GGKMV FAGWS+P+QY+DS ++S L+ R++ SLFDVSHM    + G D V  +E LV+ D+A L P  GTL++FTNE GG  DD ++T   + ++Y+V NAGC DKDLA ++  ++     G DVS  + D  +             Q    DDL KL F    ++++ GVS   +T  G TGEDG EISVP+  A     A+L+N  E ++AGL A
Sbjct:   33 LRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHVDSHLHTRRHCSLFDVSHMLQTKILGCDRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGIEDDLIVTSTSEGYLYVVSNAGCWDKDLALMQGKVRELQNMGSDVSLEVVD-NALLALQGPTATQVLQAGVADDLRKLPFMTSAVMEVFGVSGCRVTRCGYTGEDGVEISVPAAAAVRLAAALLEN-PEVKLAGLAA 260          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_DICDI (Aminomethyltransferase, mitochondrial OS=Dictyostelium discoideum GN=gcvT PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.310e-44
Identity = 103/239 (43.10%), Postives = 143/239 (59.83%), Query Frame = 2
Query:  110 LGQSITRRLARADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKG--GDVSWHIHDERSXXXXXXXXXXXXXQHLTKD-DLSKLYFGEFRILDINGVSSLLTXTGSTGEDGFEISVPSEPA 817
            + Q+I + + +++K     R+F+S  E LKKTAL++ H   G KMVPF GW MP+QY   +M+  L+ R+   LFDVSHM  L + GKD V F E +V+AD+  L  G   L+VFTNE GG IDD++IT    D +Y+VVNAGC DKD++HI   +K F +     DVS  + ++ S             Q   KD D++ + F   R + I G+  ++T  G TGEDGFEISVPS+ A
Sbjct:    2 ISQNIIKIIQKSNK-----RYFSSSNE-LKKTALNELHKELGAKMVPFCGWEMPVQYPAGVMKEHLHVRKESGLFDVSHMGQLRIHGKDRVKFFESIVVADLQALPTGHSKLSVFTNEKGGIIDDTMITNA-GDSLYVVVNAGCADKDISHINEKIKEFKSVNPTHDVSMQLLEDLSLIAIQGPTTESILQKFVKDQDITNMEFMTQRPMTIAGIDCIVTRCGYTGEDGFEISVPSKQA 233          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_SCHPO (Probable aminomethyltransferase, mitochondrial OS=Schizosaccharomyces pombe GN=gcv1 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.040e-33
Identity = 78/219 (35.62%), Postives = 126/219 (57.53%), Query Frame = 2
Query:  158 IARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYK-DSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFGEFRILDINGVSSLLTXTGSTGEDGFEISVPSE 811
            + R+   + + +LK+T L+D H+  G  +VPFAG+SMP+QYK  +I  S    R++  LFDVSHM    ++G++   +LE +  + +  L P   TL+ FTNE GG IDD++I+K  ++  Y+V NA C +KD A+++ H++++  KG ++   +                  + +   D S L FG+   +D  GV  L + +G TGEDGFE+S+P E
Sbjct:   10 LKRQSSTAASSSLKRTPLYDLHLKEGATIVPFAGFSMPVQYKGQTISASHKWTREHSGLFDVSHMVQWFVRGENATAYLESITPSSLKELKPFHSTLSAFTNETGGIIDDTIISKQDENTYYIVTNAACSEKDEANLKKHIENW--KGVELE-RVQGRALIAIQGPETASVVQKLIPNVDFSVLKFGQSAYVDFKGVKCLFSRSGYTGEDGFEVSIPEE 225          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_YEAST (Aminomethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=GCV1 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.952e-33
Identity = 95/242 (39.26%), Postives = 127/242 (52.48%), Query Frame = 2
Query:  152 KTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSI-MESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDH-IYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTK-----DDLSKLYFG---EFRILDINGVSSLLTXTGSTGEDGFEISVPSEPAGGPXQAILKN 847
            K I  + F S    LKKTALHD HV+ GG MVP+AG+SMP+ YK    +ES    R N  LFDVSHM    L G   V FL+++   D   L  G+GTL+V  N  GG +DD++ITK  DD+  Y+V NAGC ++D       +++ +    D  W I + RS             + L        DL +L+FG   EF + D  G    +   G TGEDGFEIS+ +E A    + +L N
Sbjct:    5 KKIVFKRFNS---TLKKTALHDLHVSLGGTMVPYAGYSMPVLYKGQTHIESHNWTRTNAGLFDVSHMLQSKLSGPHSVKFLQRVTPTDFNALPVGSGTLSVLLNPQGGVVDDTIITKENDDNEFYIVTNAGCAERDTEFFHDELQNGSTL--DCQWKIIEGRSLLALQGPKAKDVLEPLLSKTAPGKDLKELFFGQRHEFALKD--GSLVQIARGGYTGEDGFEISIANEKAVEFAEQLLAN 239          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_THEMA (Aminomethyltransferase OS=Thermotoga maritima GN=gcvT PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.741e-33
Identity = 85/231 (36.80%), Postives = 126/231 (54.55%), Query Frame = 2
Query:  194 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFGEFRILDINGVSSLLTXTGSTGEDGFEISVPSEPAGGPXQAILKNLK--EGEVAGLVA 880
            +K+T L + HV  G KMV FAGW MP+ Y  SI E  +  R++  +FDVSHM    +KG + V F++ L+  D + L  G    +V  NENGG IDD V+ KV  D   +VVNA   +KD   I++H K+F  +  ++S    D  +             Q L +D L ++ +  FR   + GV +L++ TG TGEDGFE+ + ++ A     A++  L+  +G  AGL A
Sbjct:    1 MKRTPLFEKHVELGAKMVDFAGWEMPLYYT-SIFEEVMAVRKSVGMFDVSHMGEFLVKGPEAVSFIDFLITNDFSSLPDGKAIYSVMCNENGGIIDDLVVYKVSPDEALMVVNAANIEKDFNWIKSHSKNFDVEVSNIS----DTTALIAFQGPKAQETLQELVEDGLEEIAYYSFRKSIVAGVETLVSRTGYTGEDGFELMLEAKNAPKVWDALMNLLRKIDGRPAGLGA 226          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_THEP1 (Aminomethyltransferase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=gcvT PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.150e-32
Identity = 85/231 (36.80%), Postives = 125/231 (54.11%), Query Frame = 2
Query:  194 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFGEFRILDINGVSSLLTXTGSTGEDGFEISVPSEPAGGPXQAILKNLK--EGEVAGLVA 880
            +K+T L + HV  G KMV FAGW MP+ Y  SI E  +  R++  +FDVSHM    +KG + V F++ L+  D + L  G    +V  NENGG IDD V+ KV  D   +VVNA   +KD   I++H K+F  +      +I D  +             Q L +D L ++ +  FR   + GV +L++ TG TGEDGFE+ + ++ A     A++  L+  +G  AGL A
Sbjct:    1 MKRTPLFEKHVGLGAKMVDFAGWEMPLYYT-SIFEEVMAVRKSVGMFDVSHMGEFLVKGPEAVSFIDFLITNDFSSLPDGKAIYSVMCNENGGIIDDLVVYKVSPDEALMVVNAANIEKDFNWIKSHSKNFDVE----ILNISDTTALIAFQGPEAQETLQELVEDSLEEIAYYSFRKSIVAGVEALVSRTGYTGEDGFELMLEAKDAPKVWDALMNLLRKIDGRPAGLGA 226          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_THESQ (Aminomethyltransferase OS=Thermotoga sp. (strain RQ2) GN=gcvT PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.453e-32
Identity = 81/231 (35.06%), Postives = 126/231 (54.55%), Query Frame = 2
Query:  194 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFGEFRILDINGVSSLLTXTGSTGEDGFEISVPSEPAGGPXQAILKNLK--EGEVAGLVA 880
            +K+T L + HV  G KMV FAGW MP+ Y  SI E  +  R++  +FDVSHM    +KG + V F++ L+  + + L  G    +V  NENGG IDD V+ KV  D   +VVNA   +KD   I++H K+F  +  ++S    D  +             Q L +D L ++ +  F+   + GV ++++ TG TGEDGFE+ + ++ +     A++  L+  +G  AGL A
Sbjct:    1 MKRTPLFEKHVELGAKMVDFAGWEMPLYYT-SIFEEVMAVRKSVGMFDVSHMGEFLVKGPEAVSFIDFLITNNFSSLPDGKALYSVMCNENGGIIDDLVVYKVSPDEALMVVNAANIEKDFNWIKSHSKNFNVEVSNIS----DTTALIAFQGPRAQEALQELVEDSLEEIAYYSFKKSIVAGVEAIVSRTGYTGEDGFELMIEAKNSPKVWDALMNLLRKIDGRPAGLGA 226          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_ANOFW (Aminomethyltransferase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.090e-30
Identity = 85/223 (38.12%), Postives = 119/223 (53.36%), Query Frame = 2
Query:  194 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSW-HIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFGEFR-ILDINGVSSLLTXTGSTGEDGFEISVPSEPAGGPXQAILKNLKE 856
            L++T L   +   G K + F GW +P+Q+  SI E     R    LFDVSHM    +KGKD V FL+K++  DVA L  G    T+   E+GG++DD ++ K  DDH  LVVNA   +KD A +  H+       GDV   +I ++ +             Q LT  DLS + F  F   +D+ GV +L++ TG TGEDGFE+   +E A    +AIL+  KE
Sbjct:    2 LQRTPLFPLYAEYGAKTIDFGGWELPVQFS-SIKEEHEAVRTRAGLFDVSHMGEFEVKGKDSVAFLQKMMTNDVAKLTDGRAQYTLMCYEDGGTVDDLLVYKKADDHYLLVVNAANIEKDFAWLSEHVV------GDVELVNISNDIAQLALQGPLAEKVLQQLTTVDLSTMKFFAFADHVDVAGVQTLVSRTGYTGEDGFELYCRAEDAPTLWRAILEAGKE 217          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_CARHZ (Aminomethyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=gcvT PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.651e-29
Identity = 77/204 (37.75%), Postives = 111/204 (54.41%), Query Frame = 2
Query:  188 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS-WHIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFGEFRILDINGVSSLLTXTGSTGEDGFEI 796
            ENLK+T L++ H+  G KMVPF GW MP+QY   I+E  +  R +  +FDVSHM  + + GK    F+  L+  DV+ L  G    T     +GG++DD +  K   +   LVVNA  +DKDLAHI  +      +  DV+   + DE +             Q LT  DL+++ +  F  +++ GV  L++ TG TGEDGFEI
Sbjct:    2 ENLKRTPLYEEHIKLGAKMVPFGGWEMPVQYT-GILEEHMAVRTDVGMFDVSHMGEIEITGKQAERFVNYLITNDVSRLNSGDVIYTTMCYPDGGTVDDLLAYKYSTERYLLVVNAANKDKDLAHILQY------RWDDVTVTDLSDETAEIALQGPRAQEILQKLTAFDLNQIKYFGFAEIEVAGVPCLVSRTGYTGEDGFEI 198          
The following BLAST results are available for this feature:
BLAST of EY659467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_CHICK6.944e-4645.70Aminomethyltransferase, mitochondrial OS=Gallus ga... [more]
GCST_CANFA5.878e-4544.35Aminomethyltransferase, mitochondrial OS=Canis fam... [more]
GCST_DICDI1.310e-4443.10Aminomethyltransferase, mitochondrial OS=Dictyoste... [more]
GCST_SCHPO1.040e-3335.62Probable aminomethyltransferase, mitochondrial OS=... [more]
GCST_YEAST3.952e-3339.26Aminomethyltransferase, mitochondrial OS=Saccharom... [more]
GCST_THEMA6.741e-3336.80Aminomethyltransferase OS=Thermotoga maritima GN=g... [more]
GCST_THEP11.150e-3236.80Aminomethyltransferase OS=Thermotoga petrophila (s... [more]
GCST_THESQ7.453e-3235.06Aminomethyltransferase OS=Thermotoga sp. (strain R... [more]
GCST_ANOFW4.090e-3038.12Aminomethyltransferase OS=Anoxybacillus flavitherm... [more]
GCST_CARHZ2.651e-2937.75Aminomethyltransferase OS=Carboxydothermus hydroge... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-D11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659467 ID=EY659467; Name=EY659467; organism=Citrus sinensis; type=EST; length=884bp
CCTGGTATTGCTCTTTCGGGCTCCCANATTTGCTTGTTTCTGAGATAAAG
AAGAAAACCCCATCTCTATATTTATATCGAATAAAATGAGAGGAGGGAGT
CTGTGGCAGCTTGGACAATCGATCACCCGTCGTTTGGCTCGGGCTGATAA
GAAGACTATAGCTCGTAGACACTTTGCCTCAGATGCTGAAAACCTGAAAA
AAACTGCCCTTCATGACTTTCATGTGGCTAATGGTGGAAAGATGGTTCCA
TTTGCTGGATGGAGCATGCCTATTCAGTACAAGGACTCAATTATGGAATC
TACTTTGAATTGTCGGCAGAATGGTAGTCTCTTTGATGTCTCCCATATGT
GTGGGCTGAGCCTCAAAGGGAAGGATTGCGTCCCTTTCCTTGAGAAGCTT
GTGATCGCTGATGTTGCTGGACTTGCCCCAGGAACTGGGACTCTTACAGT
CTTTACAAATGAAAATGGGGGTTCAATCGATGATTCAGTTATTACCAAGG
TGAAGGATGATCACATATACCTTGTTGTGAATGCTGGCTGCAGGGATAAG
GATCTTGCTCACATTGAGGCACATATGAAGAGTTTCACAGCCAAAGGGGG
GGATGTCTCGTGGCACATCCATGATGAGAGATCTCTTCTTGCCCTTCANG
GCCCCCTTGCTGCCCCAGTTCTTCAACACCTGACAAAAGATGACTTGAGC
AAGTTATACTTCGGGGAATTCCGAATTTTGGATATAAATGGTGTATCCTC
GCTTCTCACTANGACAGGGTCCACTGGTGAAGATGGATTTGAAATCTCTG
TTCCATCTGAGCCGGCCGGGGGACCTTGNCAAGCCATTCTGAAGAATCTG
AAGGAAGGTGAGGTGGCAGGTCTTGTTGCCTCAG
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