EY659467

Overview
NameEY659467
Unique NameEY659467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_BURM1 (Aminomethyltransferase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=gcvT PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.488e-16
Identity = 64/212 (30.19%), Postives = 88/212 (41.51%), Query Frame = 2
Query:  194 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFGEFRILDINGVSS------LLTXTGSTGEDGFEISVPS 808
            LK T L+  H A   +MV F GW MP+ Y   I E     R +  +FDVSHMC +   G     F E  +  +V  L  PG    +   N  GG IDD ++    +D   +VVNAG  DKD+    A       +GG     I   R              +       ++    E +  +   V+        +  TG TGEDGFE+ VP+
Sbjct:    4 LKHTPLNAAHRALNARMVDFGGWDMPVNYGSQIEEHEA-VRTDAGMFDVSHMCVVDFTGSRARAFFEYAIANNVGKLKTPGKALYSCLLNPQGGVIDDLIVYYFTEDFFRVVVNAGTADKDI----AWFNQLNEQGG-YGLTIAPRRDFAIVAVQGPNAREKVWATVPAARAATSELKPFNAAQVAGTPFGDLTVARTGYTGEDGFEVIVPA 209          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_MYCTU (Aminomethyltransferase OS=Mycobacterium tuberculosis GN=gcvT PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.780e-16
Identity = 69/236 (29.24%), Postives = 99/236 (41.95%), Query Frame = 2
Query:  179 SDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFGEFRILDINGVSSLLTXTGSTGEDGFEISVPSEPAGGPXQAILKNLKE--GEVAGLVA 880
            SD   L    L D H   G     F GW MP+ Y  ++ E     R    LFDVSH+    ++G     F+   +  D+  + PG    T+   E+GG IDD +   V DD I+LV NA      +  ++A      A GG    ++H  RS                     +++ +  +     +GV   +  TG TGE G+E+  P E AG    A+L  +    GE AGL A
Sbjct:    2 SDVPELIHGPLEDRHRELGASFAEFGGWLMPVSYAGTVSEHNAT-RTAVGLFDVSHLGKALVRGPGAAQFVNSALTNDLGRIGPGKAQYTLCCTESGGVIDDLIAYYVSDDEIFLVPNAANTAAVVGALQA-----AAPGGLSITNLH--RSYAVLAVQGPCSTDVLTALGLPTEMDYMGYADASYSGVPVRVCRTGYTGEHGYELLPPWESAGVVFDALLAAVSAAGGEPAGLGA 229          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_MYCBO (Aminomethyltransferase OS=Mycobacterium bovis GN=gcvT PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.780e-16
Identity = 69/236 (29.24%), Postives = 99/236 (41.95%), Query Frame = 2
Query:  179 SDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFGEFRILDINGVSSLLTXTGSTGEDGFEISVPSEPAGGPXQAILKNLKE--GEVAGLVA 880
            SD   L    L D H   G     F GW MP+ Y  ++ E     R    LFDVSH+    ++G     F+   +  D+  + PG    T+   E+GG IDD +   V DD I+LV NA      +  ++A      A GG    ++H  RS                     +++ +  +     +GV   +  TG TGE G+E+  P E AG    A+L  +    GE AGL A
Sbjct:    2 SDVPELIHGPLEDRHRELGASFAEFGGWLMPVSYAGTVSEHNAT-RTAVGLFDVSHLGKALVRGPGAAQFVNSALTNDLGRIGPGKAQYTLCCTESGGVIDDLIAYYVSDDEIFLVPNAANTAAVVGALQA-----AAPGGLSITNLH--RSYAVLAVQGPCSTDVLTALGLPTEMDYMGYADASYSGVPVRVCRTGYTGEHGYELLPPWESAGVVFDALLAAVSAAGGEPAGLGA 229          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_RALEJ (Aminomethyltransferase OS=Ralstonia eutropha (strain JMP134) GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.668e-15
Identity = 66/217 (30.41%), Postives = 92/217 (42.40%), Query Frame = 2
Query:  194 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHL----------TKDDLSKLYFGEFRILDINGVSSLLTXTGSTGEDGFEISVPSE 811
            L+ T L+  H A G +MV F GW MP+ Y   I E     R +  +FDVSHMC + L G +   FL  L+  +V  L  PG    +   +E GG IDD ++    +D   LVVNA     D+  I A     T  G  ++    D                 +           T+   +   F    + D      ++  TG TGEDGFE+ VP+E
Sbjct:    3 LQATPLNAIHRALGARMVDFGGWDMPVNYGSQIEEHNA-VRSDAGMFDVSHMCVVDLNGANTRAFLRGLLANNVDKLQTPGKALYSCMLDEKGGVIDDLIVYFFAEDRFRLVVNASTALGDIEWIRAR-NDATGSGVTITPRRGDVAPAGALPLAIVAVQGPNARTKVWNTFPSTQPSDALKPFNAVVVHDPAIGEIMVARTGYTGEDGFELVVPAE 217          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_NITEU (Aminomethyltransferase OS=Nitrosomonas europaea GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.668e-15
Identity = 63/215 (29.30%), Postives = 91/215 (42.33%), Query Frame = 2
Query:  194 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMK------SFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFGEFRILDINGVSSLLTXTGSTGEDGFEISVPSEPA 817
            LK T L+  H A   KMV F GW MP+ Y   + E   + R++  +FDVSHM  + + G++   FL  LV  +V  L  PG    T      GG IDD +I  + +    LVVNAG  DKD+  I    +      + T +       +    +                       +  G++           +  TG TGEDGFEI++P+  A
Sbjct:    2 LKTTPLNAAHRAMNAKMVDFGGWDMPLHYGSQLDEHH-SVRRDAGMFDVSHMLTVDIHGENVRQFLRGLVANNVDKLTLPGKALYTCMLTPTGGIIDDLIIYFLSESWFRLVVNAGTADKDIDWITGQSRQLAPALTITPRRDLAMIAVQGPNARTKVWNVIPDSQAISENLKPFQSVMLGDY----------FIARTGYTGEDGFEITLPAGQA 205          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_BURA4 (Aminomethyltransferase OS=Burkholderia ambifaria (strain MC40-6) GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.179e-15
Identity = 63/212 (29.72%), Postives = 88/212 (41.51%), Query Frame = 2
Query:  194 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFGEFRILDINGVSS------LLTXTGSTGEDGFEISVPS 808
            L  T L+  H A   +MV F GW MP+ Y   I E     R +  +FDVSHMC +   G     F E  +  +V  L  PG    +   N  GG IDD ++    +D   +VVNAG  +KD+    A       +GG     I   R              +  T    ++    E +  +   V+        +  TG TGEDGFE+ VP+
Sbjct:    4 LNHTPLNAAHRALNARMVDFGGWDMPVNYGSQIEEHEA-VRTDAGMFDVSHMCVVDFTGSRVRAFFEHAIANNVGKLKTPGKALYSCLLNPQGGVIDDLIVYYFTEDFFRVVVNAGTAEKDI----AWFNQLNEQGG-YGLTIAPRRDFAIVAVQGPNAREKVWTTVPAARAATSELKPFNAARVAGTPFGELTVARTGYTGEDGFEVIVPA 209          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_HALHL (Aminomethyltransferase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.716e-15
Identity = 64/211 (30.33%), Postives = 91/211 (43.13%), Query Frame = 2
Query:  197 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL--APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHI--EAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFGEFRILDINGVSSLLTXTGSTGEDGFEISVPSEPA 817
            ++T L+D HV  G ++V FAGW MP+ Y   + E     R +  LFDVSHM    L G      L + +  DVA L   PG    +   N  GG +DD ++   +D    +V NA  R+K    +  +AH    TA+  D      D                Q       + L    F+   I  +      TG TGEDGFE+ +P++ A
Sbjct:    3 QRTPLYDQHVGAGARVVDFAGWEMPLHYGSQLAEHQA-VRSDVGLFDVSHMAVTDLSGPGARALLREQLANDVAKLDGRPGQALYSCLLNGRGGVVDDLIVYLREDASYRVVSNAATREKVRPRLLEQAHAAGVTAEARD------DLAMIAVQGPRAASVLEQLFGDQAAAALACKPFQAAAIGEI--FAGRTGYTGEDGFELILPADQA 204          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_MYCLE (Aminomethyltransferase OS=Mycobacterium leprae GN=gcvT PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.339e-15
Identity = 68/240 (28.33%), Postives = 98/240 (40.83%), Query Frame = 2
Query:  179 SDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVN----AGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFGEFRILDINGVSSLLTXTGSTGEDGFEISVPSEPAGGPXQAILKNLKE--GEVAGLVA 880
            +DA  L K  L D H   G     F GW MP+ Y  ++ E +   R    LFDVSH+    ++G     F+  ++  D+  + PG    T+  +E+GG IDD +   V DD I+LV N    A   D   A + A +             +   RS              ++   D S             GV   +  TG TGE G+E+  P E A     A++  + +  GE AGL A
Sbjct:    2 TDAPELLKGPLEDRHRELGANFAEFGGWLMPVSYAGTVSEHSAT-RNAVGLFDVSHLGKALVRGPGAAQFVNSVLTNDLGRIRPGKAQYTLCCSESGGVIDDLIAYYVDDDEIFLVSNAANTAAVVDALQAVVPAGLTIINQHRSHAVLAVQGPRSTDVLGELGLPTGIDYMGYVDAS-----------YAGVPVRVCRTGYTGEQGYELLPPWESADVVFDALVAAVVDARGEPAGLGA 229          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_MYCLB (Aminomethyltransferase OS=Mycobacterium leprae (strain Br4923) GN=gcvT PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.339e-15
Identity = 68/240 (28.33%), Postives = 98/240 (40.83%), Query Frame = 2
Query:  179 SDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVN----AGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFGEFRILDINGVSSLLTXTGSTGEDGFEISVPSEPAGGPXQAILKNLKE--GEVAGLVA 880
            +DA  L K  L D H   G     F GW MP+ Y  ++ E +   R    LFDVSH+    ++G     F+  ++  D+  + PG    T+  +E+GG IDD +   V DD I+LV N    A   D   A + A +             +   RS              ++   D S             GV   +  TG TGE G+E+  P E A     A++  + +  GE AGL A
Sbjct:    2 TDAPELLKGPLEDRHRELGANFAEFGGWLMPVSYAGTVSEHSAT-RNAVGLFDVSHLGKALVRGPGAAQFVNSVLTNDLGRIRPGKAQYTLCCSESGGVIDDLIAYYVDDDEIFLVSNAANTAAVVDALQAVVPAGLTIINQHRSHAVLAVQGPRSTDVLGELGLPTGIDYMGYVDAS-----------YAGVPVRVCRTGYTGEQGYELLPPWESADVVFDALVAAVVDARGEPAGLGA 229          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_BURCJ (Aminomethyltransferase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=gcvT PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.339e-15
Identity = 62/212 (29.25%), Postives = 87/212 (41.04%), Query Frame = 2
Query:  194 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFGEFRILDINGVSS------LLTXTGSTGEDGFEISVPS 808
            L  T L+  H A   +MV F GW MP+ Y   I E     R +  +FDVSHMC +   G     F E  +  +V  L  PG    +   N  GG IDD ++    ++   +VVNAG  DKD+    A       +GG     I   R              +       ++    E +  +   V+        +  TG TGEDGFE+ VP+
Sbjct:    4 LNHTPLNAAHRALNARMVDFGGWDMPVNYGSQIEEHAA-VRTDAGMFDVSHMCVVDFTGSRVRAFFEHAIANNVGKLKTPGKALYSCLLNPQGGVIDDLIVYYFTEEFFRVVVNAGTADKDI----AWFNQLNEQGG-YGLTIAPRRDFAIVAVQGPNAREKVWATVPSARAATSELKPFNAAQVAGTPFGDLTIARTGYTGEDGFEVIVPA 209          
The following BLAST results are available for this feature:
BLAST of EY659467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_BURM17.488e-1630.19Aminomethyltransferase OS=Burkholderia multivorans... [more]
GCST_MYCTU9.780e-1629.24Aminomethyltransferase OS=Mycobacterium tuberculos... [more]
GCST_MYCBO9.780e-1629.24Aminomethyltransferase OS=Mycobacterium bovis GN=g... [more]
GCST_RALEJ1.668e-1530.41Aminomethyltransferase OS=Ralstonia eutropha (stra... [more]
GCST_NITEU1.668e-1529.30Aminomethyltransferase OS=Nitrosomonas europaea GN... [more]
GCST_BURA42.179e-1529.72Aminomethyltransferase OS=Burkholderia ambifaria (... [more]
GCST_HALHL3.716e-1530.33Aminomethyltransferase OS=Halorhodospira halophila... [more]
GCST_MYCLE6.339e-1528.33Aminomethyltransferase OS=Mycobacterium leprae GN=... [more]
GCST_MYCLB6.339e-1528.33Aminomethyltransferase OS=Mycobacterium leprae (st... [more]
GCST_BURCJ6.339e-1529.25Aminomethyltransferase OS=Burkholderia cepacia (st... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-D11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659467 ID=EY659467; Name=EY659467; organism=Citrus sinensis; type=EST; length=884bp
CCTGGTATTGCTCTTTCGGGCTCCCANATTTGCTTGTTTCTGAGATAAAG
AAGAAAACCCCATCTCTATATTTATATCGAATAAAATGAGAGGAGGGAGT
CTGTGGCAGCTTGGACAATCGATCACCCGTCGTTTGGCTCGGGCTGATAA
GAAGACTATAGCTCGTAGACACTTTGCCTCAGATGCTGAAAACCTGAAAA
AAACTGCCCTTCATGACTTTCATGTGGCTAATGGTGGAAAGATGGTTCCA
TTTGCTGGATGGAGCATGCCTATTCAGTACAAGGACTCAATTATGGAATC
TACTTTGAATTGTCGGCAGAATGGTAGTCTCTTTGATGTCTCCCATATGT
GTGGGCTGAGCCTCAAAGGGAAGGATTGCGTCCCTTTCCTTGAGAAGCTT
GTGATCGCTGATGTTGCTGGACTTGCCCCAGGAACTGGGACTCTTACAGT
CTTTACAAATGAAAATGGGGGTTCAATCGATGATTCAGTTATTACCAAGG
TGAAGGATGATCACATATACCTTGTTGTGAATGCTGGCTGCAGGGATAAG
GATCTTGCTCACATTGAGGCACATATGAAGAGTTTCACAGCCAAAGGGGG
GGATGTCTCGTGGCACATCCATGATGAGAGATCTCTTCTTGCCCTTCANG
GCCCCCTTGCTGCCCCAGTTCTTCAACACCTGACAAAAGATGACTTGAGC
AAGTTATACTTCGGGGAATTCCGAATTTTGGATATAAATGGTGTATCCTC
GCTTCTCACTANGACAGGGTCCACTGGTGAAGATGGATTTGAAATCTCTG
TTCCATCTGAGCCGGCCGGGGGACCTTGNCAAGCCATTCTGAAGAATCTG
AAGGAAGGTGAGGTGGCAGGTCTTGTTGCCTCAG
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