EY659467

Overview
NameEY659467
Unique NameEY659467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_NEIMA (Aminomethyltransferase OS=Neisseria meningitidis serogroup A GN=gcvT PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 8.279e-15
Identity = 66/214 (30.84%), Postives = 91/214 (42.52%), Query Frame = 2
Query:  194 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVI--TKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLT-KDDLSKLYFG--EFRILDINGVSSLLTXTGSTGEDGFEISVPSEPA 817
            LK T  H  H   G K+V FAGW +PI Y   I E     R +  +FDVSHM    + G +   F  KL+  DVA LA  G    +   N+NGG IDD ++  T   +    +V N   R+KD A        F   G +     +                 + LT K + + +      F+  D+ G    +  TG TGEDG E+ +P   A
Sbjct:    4 LKTTPFHQAHQDAGAKLVDFAGWELPIHYGSQIAEHEA-VRTDAGMFDVSHMLVTDVAGANAKAFFRKLIANDVAKLAFVGKALYSALLNDNGGVIDDLIVYRTNEAETQYRIVSNGATREKDTA-------QFHKVGQEFGVSFNPRYDLGMLAVQGPKAIEKLLTVKPEWADVVHNLKPFQGADL-GNDWFVARTGYTGEDGVEVILPGTEA 208          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_NEIMB (Aminomethyltransferase OS=Neisseria meningitidis serogroup B GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.081e-14
Identity = 66/214 (30.84%), Postives = 91/214 (42.52%), Query Frame = 2
Query:  194 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVI--TKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLT-KDDLSKLYFG--EFRILDINGVSSLLTXTGSTGEDGFEISVPSEPA 817
            LK T  H  H   G K+V FAGW +PI Y   I E     R +  +FDVSHM    + G +   F  KL+  DVA LA  G    +   N+NGG IDD ++  T   +    +V N   R+KD A        F   G +     +                 + LT K + + +      F+  D+ G    +  TG TGEDG E+ +P   A
Sbjct:    4 LKTTPFHQAHQDAGAKLVDFAGWELPIHYGSQIAEHEA-VRTDAGMFDVSHMLVTDVAGANAKAFFRKLIANDVAKLAFVGKALYSALLNDNGGVIDDLIVYRTNEAETQYRIVSNGATREKDTA-------QFHKVGQEFGVAFNPRYDLGMLAVQGPKAIEKLLTVKPEWADVVHNLKPFQGADL-GNDWFVARTGYTGEDGVEVILPGTEA 208          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_HALSA (Probable aminomethyltransferase OS=Halobacterium salinarium GN=gcvT PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.081e-14
Identity = 63/227 (27.75%), Postives = 94/227 (41.41%), Query Frame = 2
Query:  194 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDD---HIYLVVNAG---------CRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFGEFRILDINGVSSLLTXTGSTGEDGFEISVPSEPAGGPXQAI 838
            L+ + LH  H   G     F GW+MP+ + D I       R+   +FDVSHM  + + G D    +++L   DV+ L PG       T+++G  IDD+V+ +   D       V NAG            +D   ++A + + T   G V+    D                     D +  L   E   + + GV  L+  TG TGE G EI  P++ AG    AI
Sbjct:    3 LRTSPLHGRHEDRGASFTEFGGWNMPVDF-DGIQAEHAAVREAAGIFDVSHMGEIEVSGPDAERLMQRLTTNDVSRLDPGDAQYAAITDDDGIMIDDTVVYRTPADWPGAFLFVPNAGHDAAAFDRWTDHRDAHDLDASVDNVTTDYGMVAVQGPDAPDLVAAR-----------AGDGVHDLGRFEAATVGVAGVECLVANTGYTGEAGVEIVFPADGAGAVWDAI 217          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_HALS3 (Probable aminomethyltransferase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.081e-14
Identity = 63/227 (27.75%), Postives = 94/227 (41.41%), Query Frame = 2
Query:  194 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDD---HIYLVVNAG---------CRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFGEFRILDINGVSSLLTXTGSTGEDGFEISVPSEPAGGPXQAI 838
            L+ + LH  H   G     F GW+MP+ + D I       R+   +FDVSHM  + + G D    +++L   DV+ L PG       T+++G  IDD+V+ +   D       V NAG            +D   ++A + + T   G V+    D                     D +  L   E   + + GV  L+  TG TGE G EI  P++ AG    AI
Sbjct:    3 LRTSPLHGRHEDRGASFTEFGGWNMPVDF-DGIQAEHAAVREAAGIFDVSHMGEIEVSGPDAERLMQRLTTNDVSRLDPGDAQYAAITDDDGIMIDDTVVYRTPADWPGAFLFVPNAGHDAAAFDRWTDHRDAHDLDASVDNVTTDYGMVAVQGPDAPDLVAAR-----------AGDGVHDLGRFEAATVGVAGVECLVANTGYTGEAGVEIVFPADGAGAVWDAI 217          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_BURCC (Aminomethyltransferase OS=Burkholderia cenocepacia (strain MC0-3) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.081e-14
Identity = 61/212 (28.77%), Postives = 85/212 (40.09%), Query Frame = 2
Query:  194 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFGEFRILDINGVSS------LLTXTGSTGEDGFEISVPS 808
            L  T L+  H A   +MV F GW MP+ Y   I E     R +  +FDVSHMC +   G     F E  +   V  L  PG    +   N  GG IDD ++    ++   +VVNAG  +KD+A           K G     I   R              +       ++    E +  +   V+        +  TG TGEDGFE+ VP+
Sbjct:    4 LNHTPLNAAHRALNARMVDFGGWDMPVNYGSQIEEHAA-VRTDAGMFDVSHMCVVDFTGSRVRAFFEHAIANHVGKLKTPGKALYSCLLNPQGGVIDDLIVYYFTEEFFRVVVNAGTAEKDIAWFNQ-----LNKQGGYGLTIAPRRDFAIVAVQGPNAREKVWATVPAARAATSELKPFNAAQVAGTPFGDLTIARTGYTGEDGFEVIVPA 209          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_BURVG (Aminomethyltransferase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.412e-14
Identity = 62/212 (29.25%), Postives = 87/212 (41.04%), Query Frame = 2
Query:  194 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFGEFRILDINGVSS------LLTXTGSTGEDGFEISVPS 808
            L  T L+  H A   +MV F GW MP+ Y   I E     R +  +FDVSHMC +   G     F E  +  +V  L  PG    +   N  GG IDD ++    +D   +VVNAG  +KD+    A       +GG     I   R              +       ++    E +  +   V+        +  TG TGEDGFE+ VP+
Sbjct:    4 LNHTPLNAAHRALNARMVDFGGWDMPVNYGSQIEEHEA-VRTDAGMFDVSHMCVVDFTGSRVRAFFEHALANNVGKLKTPGKALYSCLLNPQGGVIDDLIVYYFTEDFFRVVVNAGTAEKDI----AWFNQLNEQGG-YGLTIAPRRDFAIVAVQGPNAREKVWATVPAARAATSELKPFNAAQVAGTPFGDLTVARTGYTGEDGFEVIVPA 209          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_BURS3 (Aminomethyltransferase OS=Burkholderia sp. (strain 383) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.412e-14
Identity = 63/225 (28.00%), Postives = 92/225 (40.89%), Query Frame = 2
Query:  194 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFGEFRILDINGVSS------LLTXTGSTGEDGFEISVPSEPAGGPXQAILKN 847
            L  T L+  H A   +MV F GW MP+ Y   I E     R +  +FDVSHMC +   G     F E  +  +V  L  PG    +   N  GG IDD ++    ++   +VVNAG  +KD+    A       +GG     I   R              +  +    ++    E +  +   V+        +  TG TGEDGFE+ VP+        A+ +N
Sbjct:    4 LNHTPLNAAHRALNARMVDFGGWDMPVNYGSQIEEHEA-VRTDAGMFDVSHMCVVDFTGSRVRAFFEHAIANNVGKLKTPGKALYSCLLNPQGGVIDDLIVYYFTEEFFRVVVNAGTAEKDI----AWFNQLNEQGG-FGVTITPRRDFAIVAVQGPNAREKAWSTVPAARAATSELKPFNAAQVAGTPFGDLTVARTGYTGEDGFEVIVPAVHVEALWNALQQN 222          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_PROMP (Aminomethyltransferase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.409e-14
Identity = 64/225 (28.44%), Postives = 108/225 (48.00%), Query Frame = 2
Query:  191 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKD-----DHIYLVVNAGCRDKDLAHIEAHMKS-----FTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDLSKL-YFG-EFRILDINGVSS----LLTXTGSTGEDGFEISVPSEPA 817
            +L K+ L+  ++ +  K+V FAGW MPI +   I E   + R +   FD+SHM  +SL+G +   +++K    ++   + G G  T+  NE GG IDD +I  +         I+L+VNA     D + I+ ++ +       AK   V + +  + S             +   K  +S + YFG E++I     +SS      + TG TGE+G EI + ++ A
Sbjct:    2 DLLKSPLYSKYIESNAKLVNFAGWEMPISFSGLINEHE-SVRTSAGFFDISHMGVISLRGINPKEYIQKFFPTNLYSFSEGQGLYTLMLNEKGGIIDDLIIYDLGQQEEDISEIFLIVNASRYQTDFSWIKNNLNTNNISISNAKKDKVLFALQGKNS---------FKLFEEWIKSSISHIPYFGCEYKI--FKHISSKEKIFFSKTGYTGENGLEILLSAKAA 214          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_MYCA1 (Aminomethyltransferase OS=Mycobacterium avium (strain 104) GN=gcvT PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.109e-14
Identity = 66/237 (27.85%), Postives = 100/237 (42.19%), Query Frame = 2
Query:  179 SDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHL-TKDDLSKLYFGEFRILDINGVSSLLTXTGSTGEDGFEISVPSEPAGGPXQAILKNLKE--GEVAGLVA 880
            S+  +L    L D H   G     F GW MP+ Y  ++ E     R    LFDVSH+    ++G     F+   +  D+  + PG    T+  NE+GG IDD +   V DD I+LV NA     + A +   ++     G  VS ++H   +               L    D+  + + +        V   +  TG TGE G+E+  P E AG    A+   + +  G+ AGL A
Sbjct:    2 SNEADLLHGPLEDRHRDLGASFAEFGGWLMPVSYAGTVSEHNAT-RNAVGLFDVSHLGKALVRGTGAARFVNSALTNDLNRIGPGKAQYTLCCNESGGVIDDLIAYYVDDDEIFLVPNAA----NTAAVVEALQGAAPAGVTVS-NLHRSYAVLAVQGPRSADVLAELGLPSDMDYMAYAD---TSFRQVPVRVCRTGYTGEHGYELLPPWESAGVVFDALAAAVSQAGGQPAGLGA 229          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_CORJK (Aminomethyltransferase OS=Corynebacterium jeikeium (strain K411) GN=gcvT PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.109e-14
Identity = 58/224 (25.89%), Postives = 100/224 (44.64%), Query Frame = 2
Query:  194 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTK------------DDLSKLYFGEFRILDINGVSS----LLTXTGSTGEDGFEISVPSEPA 817
            LKKTALH  H   G +   F GW MP++Y   + E     R    +FD+SHM  + + G     FL+  +I+ ++ +  G    ++   E+GG IDD +  ++ D+   +V NAG  D  ++ ++   + F  +  + S    D  S               + +            + +++   G       +GV++    L+  TG TGEDGFE+ V ++ A
Sbjct:    4 LKKTALHLVHEKLGARFTDFGGWDMPLKYSSELDEHHA-VRNAVGVFDLSHMGEVRVTGPQAAEFLDHALISKLSAVKVGKAKYSMICTESGGIIDDLITYRLGDNEFLIVPNAGNVDNVVSALQGRTEGFDVEVNNES----DATSMIAVQGPKAAQAMLEIVENVVDAPEASGAGETVAEAIEGLGYYAAFSGVAAGQPVLVARTGYTGEDGFELIVANDGA 222          
The following BLAST results are available for this feature:
BLAST of EY659467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_NEIMA8.279e-1530.84Aminomethyltransferase OS=Neisseria meningitidis s... [more]
GCST_NEIMB1.081e-1430.84Aminomethyltransferase OS=Neisseria meningitidis s... [more]
GCST_HALSA1.081e-1427.75Probable aminomethyltransferase OS=Halobacterium s... [more]
GCST_HALS31.081e-1427.75Probable aminomethyltransferase OS=Halobacterium s... [more]
GCST_BURCC1.081e-1428.77Aminomethyltransferase OS=Burkholderia cenocepacia... [more]
GCST_BURVG1.412e-1429.25Aminomethyltransferase OS=Burkholderia vietnamiens... [more]
GCST_BURS31.412e-1428.00Aminomethyltransferase OS=Burkholderia sp. (strain... [more]
GCST_PROMP2.409e-1428.44Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_MYCA14.109e-1427.85Aminomethyltransferase OS=Mycobacterium avium (str... [more]
GCST_CORJK4.109e-1425.89Aminomethyltransferase OS=Corynebacterium jeikeium... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-D11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659467 ID=EY659467; Name=EY659467; organism=Citrus sinensis; type=EST; length=884bp
CCTGGTATTGCTCTTTCGGGCTCCCANATTTGCTTGTTTCTGAGATAAAG
AAGAAAACCCCATCTCTATATTTATATCGAATAAAATGAGAGGAGGGAGT
CTGTGGCAGCTTGGACAATCGATCACCCGTCGTTTGGCTCGGGCTGATAA
GAAGACTATAGCTCGTAGACACTTTGCCTCAGATGCTGAAAACCTGAAAA
AAACTGCCCTTCATGACTTTCATGTGGCTAATGGTGGAAAGATGGTTCCA
TTTGCTGGATGGAGCATGCCTATTCAGTACAAGGACTCAATTATGGAATC
TACTTTGAATTGTCGGCAGAATGGTAGTCTCTTTGATGTCTCCCATATGT
GTGGGCTGAGCCTCAAAGGGAAGGATTGCGTCCCTTTCCTTGAGAAGCTT
GTGATCGCTGATGTTGCTGGACTTGCCCCAGGAACTGGGACTCTTACAGT
CTTTACAAATGAAAATGGGGGTTCAATCGATGATTCAGTTATTACCAAGG
TGAAGGATGATCACATATACCTTGTTGTGAATGCTGGCTGCAGGGATAAG
GATCTTGCTCACATTGAGGCACATATGAAGAGTTTCACAGCCAAAGGGGG
GGATGTCTCGTGGCACATCCATGATGAGAGATCTCTTCTTGCCCTTCANG
GCCCCCTTGCTGCCCCAGTTCTTCAACACCTGACAAAAGATGACTTGAGC
AAGTTATACTTCGGGGAATTCCGAATTTTGGATATAAATGGTGTATCCTC
GCTTCTCACTANGACAGGGTCCACTGGTGAAGATGGATTTGAAATCTCTG
TTCCATCTGAGCCGGCCGGGGGACCTTGNCAAGCCATTCTGAAGAATCTG
AAGGAAGGTGAGGTGGCAGGTCTTGTTGCCTCAG
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