EY659467

Overview
NameEY659467
Unique NameEY659467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5170 contig Csv1_Contig5170:159..1042. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_MYCPA (Aminomethyltransferase OS=Mycobacterium paratuberculosis GN=gcvT PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.366e-14
Identity = 67/237 (28.27%), Postives = 99/237 (41.77%), Query Frame = 2
Query:  179 SDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHL-TKDDLSKLYFGEFRILDINGVSSLLTXTGSTGEDGFEISVPSEPAGGPXQAILKNLKE--GEVAGLVA 880
            S+  +L    L D H   G     F GW MP+ Y  ++ E     R    LFDVSH+    ++G     F+   +  D+  + PG    T+  NE+GG IDD +   V DD I+LV NA       A +EA   +  A  G    ++H   +               L    D+  + + +        V   +  TG TGE G+E+  P E AG    A+   + +  G+ AGL A
Sbjct:    2 SNEADLLHGPLEDRHRDLGASFAEFGGWLMPVSYAGTVSEHNAT-RNAVGLFDVSHLGKALVRGTGAARFVNSALTNDLNRIGPGKAQYTLCCNESGGVIDDLIAYYVDDDEIFLVPNAA---NTAAVVEALQGA--APAGVTVRNLHRSYAVLAVQGPRSANVLAELGLPSDMDYMAYAD---TSFRQVPVRVCRTGYTGEHGYELLPPWESAGVVFDALAAAVSQAGGQPAGLGA 229          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_PROM5 (Aminomethyltransferase OS=Prochlorococcus marinus (strain MIT 9515) GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.154e-14
Identity = 62/222 (27.93%), Postives = 101/222 (45.50%), Query Frame = 2
Query:  191 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKV-----KDDHIYLVVNAGCRDKDLAHIEAHMKS-----FTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFG-EFRILDINGVSS--LLTXTGSTGEDGFEISVPSEPA 817
            +L K+ L+  ++ +  K++ FAGW MPI +   I E   + R +   FD+SHM  +SL+G +   +++K    ++   + G G  T+  NE GG IDD +I  +         I+L+VNA     D   I+ ++ +       AK   V   I   R+              H+        YFG E++  D          + TG TGE+G EI +P++ A
Sbjct:    2 DLLKSPLYSKYIESNAKLINFAGWEMPISFSGLINEHE-SVRTSAGFFDISHMGVISLRGINPKEYIQKFFPTNLYSFSEGQGLYTLILNEKGGIIDDLIIYDLGRQEGDISEIFLIVNASRYQDDFLWIKNNLNTNQVSVSNAKTDKVLLSIQG-RNSFTLFEEWIGSSISHIP-------YFGCEYKNFDHISTEGKFFFSKTGYTGENGLEILLPAQSA 214          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_PROMS (Aminomethyltransferase OS=Prochlorococcus marinus (strain AS9601) GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.196e-13
Identity = 46/134 (34.33%), Postives = 75/134 (55.97%), Query Frame = 2
Query:  191 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKV---KDD--HIYLVVNAGCRDKDLAHIEAHM 577
            +L K+ L+  +V +  K+V FAGW MPI +   I E   + R +  LFD+SHM  +S+KG +   +++KL   ++     G G  TV  N+ GG IDD +I  +   K+D   + L+VNA   ++D   I+ ++
Sbjct:    2 DLLKSPLYSKYVESNAKLVDFAGWEMPISFSGLIKEHE-SVRYSAGLFDISHMGVISIKGINPKDYIQKLFPTNLYSFCEGQGLYTVMLNDKGGIIDDLIIYDLGIQKNDISELLLIVNASRYEEDFQWIKNNL 134          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_PROM2 (Aminomethyltransferase OS=Prochlorococcus marinus (strain MIT 9215) GN=gcvT PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.663e-13
Identity = 45/134 (33.58%), Postives = 76/134 (56.72%), Query Frame = 2
Query:  191 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKV---KDD--HIYLVVNAGCRDKDLAHIEAHM 577
            +L K+ L+  +V +  K+V FAGW MPI +   I E   + R +  LFD+SHM  +S+KG +   +++KL   ++   + G G  TV  N+ GG IDD +I  +   ++D   + L+VNA   ++D   I+ ++
Sbjct:    2 DLLKSPLYSKYVESNAKLVNFAGWEMPISFSGLIKEHE-SVRSSAGLFDISHMGVISIKGINPKDYIQKLFPTNLYSFSEGQGLYTVMLNDKGGIIDDLIIYDLGIQENDLSELLLIVNASRYEEDFQWIKNNL 134          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_PROM0 (Aminomethyltransferase OS=Prochlorococcus marinus (strain MIT 9301) GN=gcvT PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.478e-13
Identity = 43/134 (32.09%), Postives = 76/134 (56.72%), Query Frame = 2
Query:  191 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKV---KDD--HIYLVVNAGCRDKDLAHIEAHM 577
            +L+K+ L+  ++ +  K+V FAGW MPI +   I E   + R +  LFD+SHM  +S+KG +   +++K    ++   + G G  TV  N+ GG IDD +I  +   ++D   + L+VNA   ++D   I+ ++
Sbjct:    2 DLRKSPLYSKYIESNAKLVDFAGWEMPISFSGLIKEHE-SVRSSAGLFDISHMGVISVKGINPKDYIQKFFPTNLYSFSEGQGLYTVMLNDKGGIIDDLIIYDLGIQENDITELLLIVNASRYEEDFQWIKNNL 134          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_AQUAE (Aminomethyltransferase OS=Aquifex aeolicus GN=gcvT PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.478e-13
Identity = 59/204 (28.92%), Postives = 90/204 (44.12%), Query Frame = 2
Query:  200 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFGEFRILDINGVSSLLTXTGSTGEDGFEISVPSE 811
            +T L+  H     K   FAGW+MP+QY  SI+E     R    +FD+SHM  L ++  D    L+     ++  L+ G     +  NE GG  DD  +  + +   +L VNA  R K +  +  H+K     G  V   +   +S                    +S L +  F++ D     ++++ TG TGEDGFEI V  E
Sbjct:    8 QTPLYYVHKHLKAKFTNFAGWTMPLQYT-SIIEEVRAVRXRAGVFDISHMGRLLIE--DPEKKLQYFTTNNLDKLSVGKVQYNLLPNEKGGIKDDVTVYMLSEIEFFLCVNAANRQKVINWLSPHLKLRDLSGELVQIALQGPKSEEIISKFY-----------PVSDLKYYRFKVFD----KTIISRTGYTGEDGFEIYVSPE 193          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_SYNY3 (Aminomethyltransferase OS=Synechocystis sp. (strain PCC 6803) GN=gcvT PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.543e-13
Identity = 58/211 (27.49%), Postives = 91/211 (43.13%), Query Frame = 2
Query:  200 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVI-----TKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWH-IHDERSXXXXXXXXXXXXXQHLTKDDLSKL-YFGEFRILDINGVSSLLTXTGSTGEDGFEISVPSE 811
            +T L++       K+  F GW MP+Q+   + +     R+   +FD+SHM    L G+  +  L+ LV +D+  L PG    TV  N  GG IDD ++          + + L+VNA    KD   +  H+        ++ +  +  E+              Q L   +L +L  FG     +     + +  TG TGEDGFEI V  E
Sbjct:    9 RTPLYNLITEQTTKLTTFGGWEMPVQFA-GLKQEHQAVREKVGMFDISHMGKFVLTGQKVLAALQSLVPSDLDRLTPGKAQYTVLLNAQGGIIDDIIVYDQGKNPEGQERVTLIVNAATTVKDKQWLLEHLPE------EIDFQDLSREKVLIALQGPEALTILQPLVDQNLGELPAFGHLE-AEFLREKAFIARTGYTGEDGFEIMVSPE 211          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_NOCFA (Aminomethyltransferase OS=Nocardia farcinica GN=gcvT PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.543e-13
Identity = 63/233 (27.04%), Postives = 102/233 (43.78%), Query Frame = 2
Query:  191 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDL-SKLYFGEFRILDINGVSSLLTXTGSTGEDGFEISVPSEPAGGPXQAILKNLK--EGEVAGLVA 880
            +L +  +HD H   G     F GW MP+ Y  ++ E     R    LFDVSH+   ++ G     F+   +  D+  + PG    T+  + +GG IDD +   V DD I+LV NA     + A + A + +    G  V+    D+               Q L    L +++ +  F     +G    +  TG TGE G+E+      A    +A+L+ ++  +G+ AGL A
Sbjct:    5 DLLRGPVHDLHGELGATFAEFGGWQMPVAYAGTVGEHQA-VRTTVGLFDVSHLGKATVAGPGAAQFVNATLTNDLGRIHPGKAQYTLCCSADGGVIDDLIAYYVADDEIFLVPNAA----NTAAVVAELAAAAPAGVTVT----DQHRDYAVFAVQGPRSAQVLAALGLPTEMEYMAFADAAWDGRPIRVCRTGYTGEHGYEVLPRWADAEPVFRALLEQVRAADGQPAGLGA 228          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_FRASN (Aminomethyltransferase OS=Frankia sp. (strain EAN1pec) GN=gcvT PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.252e-11
Identity = 52/203 (25.62%), Postives = 87/203 (42.86%), Query Frame = 2
Query:  194 LKKTALHDFHVANGGKMVPFAGWSMPIQYKD-SIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHL-TKDDLSKLYFGEFRILDINGVSSLLTXTGSTGEDGFEI 796
            L+++ LH+ HV  G K   F GW MPI+Y    ++      R    +FDVSH+    + G     F+   +  D+  + PG    T+  +E GG +DD +      D+++LV NA    + +  + A      A  G     +H E +             + L    D + + F +    +  G   ++  +G TGE GFE+
Sbjct:    4 LRRSPLHERHVELGAKTAAFGGWEMPIEYAGRGVLAEHAAVRGAVGIFDVSHLGKARVAGPGAAEFVNTCLTNDLRRVGPGQAQYTLCCDETGGVVDDLIAYYYAVDNVFLVPNAANTAEVVRRLAAQ-----APAGVAVTDLHTEFAVLAVQGPAAPEVLRKLGLPADGAYMSFAD---AEWKGRPVIVCRSGYTGEAGFEL 198          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_FRAAA (Aminomethyltransferase OS=Frankia alni (strain ACN14a) GN=gcvT PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.553e-11
Identity = 38/128 (29.69%), Postives = 62/128 (48.44%), Query Frame = 2
Query:  191 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKD-SIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEA 571
            +L+++ L+  HV  G KM  F GW MPI+Y    ++      R    +FDVSH+    + G     F+   +  D+  +APG    T+  N+ GG +DD +      + + LV NA    + +A + A
Sbjct:    3 DLRRSPLYGRHVDLGAKMAGFGGWEMPIEYAGRGVLAEHQAVRGAVGIFDVSHLGKAEVTGAGAAEFVNACLSNDLGRIAPGQAQYTLCCNDEGGVVDDLIAYLFSGERVLLVPNAANNAEVVARLAA 130          
The following BLAST results are available for this feature:
BLAST of EY659467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_MYCPA5.366e-1428.27Aminomethyltransferase OS=Mycobacterium paratuberc... [more]
GCST_PROM59.154e-1427.93Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_PROMS1.196e-1334.33Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_PROM22.663e-1333.58Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_PROM03.478e-1332.09Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_AQUAE3.478e-1328.92Aminomethyltransferase OS=Aquifex aeolicus GN=gcvT... [more]
GCST_SYNY34.543e-1327.49Aminomethyltransferase OS=Synechocystis sp. (strai... [more]
GCST_NOCFA4.543e-1327.04Aminomethyltransferase OS=Nocardia farcinica GN=gc... [more]
GCST_FRASN4.252e-1125.62Aminomethyltransferase OS=Frankia sp. (strain EAN1... [more]
GCST_FRAAA5.553e-1129.69Aminomethyltransferase OS=Frankia alni (strain ACN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-D11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659467 ID=EY659467; Name=EY659467; organism=Citrus sinensis; type=EST; length=884bp
CCTGGTATTGCTCTTTCGGGCTCCCANATTTGCTTGTTTCTGAGATAAAG
AAGAAAACCCCATCTCTATATTTATATCGAATAAAATGAGAGGAGGGAGT
CTGTGGCAGCTTGGACAATCGATCACCCGTCGTTTGGCTCGGGCTGATAA
GAAGACTATAGCTCGTAGACACTTTGCCTCAGATGCTGAAAACCTGAAAA
AAACTGCCCTTCATGACTTTCATGTGGCTAATGGTGGAAAGATGGTTCCA
TTTGCTGGATGGAGCATGCCTATTCAGTACAAGGACTCAATTATGGAATC
TACTTTGAATTGTCGGCAGAATGGTAGTCTCTTTGATGTCTCCCATATGT
GTGGGCTGAGCCTCAAAGGGAAGGATTGCGTCCCTTTCCTTGAGAAGCTT
GTGATCGCTGATGTTGCTGGACTTGCCCCAGGAACTGGGACTCTTACAGT
CTTTACAAATGAAAATGGGGGTTCAATCGATGATTCAGTTATTACCAAGG
TGAAGGATGATCACATATACCTTGTTGTGAATGCTGGCTGCAGGGATAAG
GATCTTGCTCACATTGAGGCACATATGAAGAGTTTCACAGCCAAAGGGGG
GGATGTCTCGTGGCACATCCATGATGAGAGATCTCTTCTTGCCCTTCANG
GCCCCCTTGCTGCCCCAGTTCTTCAACACCTGACAAAAGATGACTTGAGC
AAGTTATACTTCGGGGAATTCCGAATTTTGGATATAAATGGTGTATCCTC
GCTTCTCACTANGACAGGGTCCACTGGTGAAGATGGATTTGAAATCTCTG
TTCCATCTGAGCCGGCCGGGGGACCTTGNCAAGCCATTCTGAAGAATCTG
AAGGAAGGTGAGGTGGCAGGTCTTGTTGCCTCAG
back to top