EY659467

Overview
NameEY659467
Unique NameEY659467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5170 contig Csv1_Contig5170:159..1042. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_LISMC (Aminomethyltransferase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=gcvT PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.961e-25
Identity = 73/218 (33.49%), Postives = 108/218 (49.54%), Query Frame = 2
Query:  194 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS-WHIHDERSXXXXXXXXXXXXXQHLTKDDLSKL-YFGEFRILDINGVSSLLTXTGSTGEDGFEISVPSEPAGGPXQAIL 841
            L KT +H  +   G K + F GW +P+Q+     E     R +  LFDVSHM  + +KG D   +L+ L+  D+  +  G     +   E GG++DD V+ K  +    LVVNA   DKD   +  +++      GDVS  ++  E                 LT  DLS + +FG     D+ GV ++++ +G TGEDGFEI +PS  AG   +AIL
Sbjct:    4 LLKTPIHPLYAKYGAKTIDFGGWDLPVQFAGIKAEHEA-VRTDAGLFDVSHMGEILVKGPDSTSYLQYLLTNDIEKIKIGKAQYNIMCYETGGTVDDLVVYKKSETEYILVVNAANTDKDFEWMVKNIR------GDVSVTNVSSEYGQLALQGPNAEKILAKLTDVDLSSISFFGFVEDADVAGVKTIISRSGYTGEDGFEIYMPSADAGKVFEAIL 214          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_CLOBK (Aminomethyltransferase OS=Clostridium botulinum (strain Okra / Type B1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.961e-25
Identity = 79/224 (35.27%), Postives = 112/224 (50.00%), Query Frame = 2
Query:  188 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFGEF-RILDINGVSSLLTXTGSTGEDGFEISVPSEPAGGPXQAILKNLKE 856
            E+LK T L   +   GGK+V FAG+ +P Q+K  + E     R+   LFDVSHM  + + GKD   F++ L+  D+  L       T   NE+GG IDD ++ K  ++  +LV+NA  +DKD+  I  H   F  +  D S    D  +             Q +   DL ++ F +  R + +NG   L++ TG TGEDGFEI    E A G   AIL   KE
Sbjct:    2 EDLKVTPLRGVYEEYGGKIVDFAGYELPTQFKGFLHEHH-TVREKAGLFDVSHMGEVMVTGKDAGKFIQYLMTNDINILKDNEVLYTFMCNEDGGVIDDLLVYKFAENEFFLVINASNKDKDVKWIMDHKGDFDVEIVDES----DSIAQLALQGPLAEEILQKIVDIDLQEIKFFKLKRDVLVNGKKCLVSRTGYTGEDGFEIYCKPEDAKGLWHAILNAGKE 220          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_XYLFT (Aminomethyltransferase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=gcvT PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.174e-25
Identity = 79/228 (34.65%), Postives = 110/228 (48.25%), Query Frame = 2
Query:  194 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLT-------KDDLSKLYFGEFRILDINGVSS---LLTXTGSTGEDGFEISVPSEPAGGPXQAILK 844
            +KKT L+D H A G KMV F+GW MPI Y   I E   + R+N  +FDVSHM  + L G    P L +L+   V  L  PG    +   N  GG IDD ++  +++D+   +VNA  R+KDLA I     +F  +         +ER+               +T       +D + KL  G F  L++   S     ++ TG TGEDGFEI +P E       A+LK
Sbjct:    2 IKKTILNDTHQALGAKMVDFSGWEMPIHYGSQIDEHH-HVRRNAGIFDVSHMTVIDLHGTQVRPLLRRLLANSVDKLKVPGKALYSCMLNPQGGVIDDLIVYYLREDYFRFIVNAATREKDLAWINTQASAFNVR--------VEERADLAMLAVQGPAARAQVTNLLAETHRDAVEKL--GRFAALEVASHSKKPLFISRTGYTGEDGFEILLPQEETITLWNALLK 218          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_XYLF2 (Aminomethyltransferase OS=Xylella fastidiosa (strain M23) GN=gcvT PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.174e-25
Identity = 79/228 (34.65%), Postives = 110/228 (48.25%), Query Frame = 2
Query:  194 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLT-------KDDLSKLYFGEFRILDINGVSS---LLTXTGSTGEDGFEISVPSEPAGGPXQAILK 844
            +KKT L+D H A G KMV F+GW MPI Y   I E   + R+N  +FDVSHM  + L G    P L +L+   V  L  PG    +   N  GG IDD ++  +++D+   +VNA  R+KDLA I     +F  +         +ER+               +T       +D + KL  G F  L++   S     ++ TG TGEDGFEI +P E       A+LK
Sbjct:    2 IKKTILNDTHQALGAKMVDFSGWEMPIHYGSQIDEHH-HVRRNAGIFDVSHMTVIDLHGTQVRPLLRRLLANSVDKLKVPGKALYSCMLNPQGGVIDDLIVYYLREDYFRFIVNAATREKDLAWINTQASAFNVR--------VEERADLAMLAVQGPAARAQVTNLLAETHRDAVEKL--GRFAALEVASHSKKPLFISRTGYTGEDGFEILLPQEETITLWNALLK 218          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_XYLFM (Aminomethyltransferase OS=Xylella fastidiosa (strain M12) GN=gcvT PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.757e-25
Identity = 79/228 (34.65%), Postives = 110/228 (48.25%), Query Frame = 2
Query:  194 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLT-------KDDLSKLYFGEFRILDINGVSS---LLTXTGSTGEDGFEISVPSEPAGGPXQAILK 844
            +KKT L+D H A G KMV F+GW MPI Y   I E   + R+N  +FDVSHM  + L G    P L +L+   V  L  PG    +   N  GG IDD ++  +++D+   +VNA  R+KDLA I     +F  +         +ER+               +T       +D + KL  G F  L++   S     ++ TG TGEDGFEI +P E       A+LK
Sbjct:    2 IKKTILNDTHRALGAKMVDFSGWEMPIHYGSQIDEHH-HVRRNAGIFDVSHMTVIDLHGTQVRPLLRRLLANSVDKLKVPGKALYSCMLNPQGGVIDDLIVYYLREDYFRFIVNAATREKDLAWINTQASAFNVR--------VEERADLAMLAVQGPAARAQVTNLLAETHRDAVEKL--GRFAALEVASHSKKTLFISRTGYTGEDGFEILLPQEETITLWNALLK 218          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_XYLFA (Aminomethyltransferase OS=Xylella fastidiosa GN=gcvT PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.757e-25
Identity = 79/228 (34.65%), Postives = 110/228 (48.25%), Query Frame = 2
Query:  194 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLT-------KDDLSKLYFGEFRILDINGVSS---LLTXTGSTGEDGFEISVPSEPAGGPXQAILK 844
            +KKT L+D H A G KMV F+GW MPI Y   I E   + R+N  +FDVSHM  + L G    P L +L+   V  L  PG    +   N  GG IDD ++  +++D+   +VNA  R+KDLA I     +F  +         +ER+               +T       +D + KL  G F  L++   S     ++ TG TGEDGFEI +P E       A+LK
Sbjct:    2 IKKTILNDTHRALGAKMVDFSGWEMPIHYGSQIDEHH-HVRRNAGIFDVSHMTVIDLHGTQVRPLLRRLLANSVDKLKVPGKALYSCMLNPQGGVIDDLIVYYLREDYFRFIVNAATREKDLAWINTQASAFNVR--------VEERADLAMLAVQGPAARAQVTNLLAETHRDAVEKL--GRFAALEVASHSKKILFISRTGYTGEDGFEILLPQEETITLWNALLK 218          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_STAES (Aminomethyltransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gcvT PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.757e-25
Identity = 75/208 (36.06%), Postives = 107/208 (51.44%), Query Frame = 2
Query:  191 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFGEFR-ILDINGVSSLLTXTGSTGEDGFEISVPSE 811
            +LKKT L+  +V +G K+V F GW+MP+Q+  SI E     R N  LFDVSHM  + + GKD   F++ ++  D   L       +   N+ GG IDD V  K+ ++H  L+VNA   +KD   I+ H  +FT    DVS +  D+                 L   D+S +   EF+  + I G S +L+ +G TGEDGFEI    E
Sbjct:    4 DLKKTPLYQNYVDSGAKIVEFGGWAMPVQFS-SIKEEHNAVRYNVGLFDVSHMGEIEISGKDAEQFIQYILSNDTNLLTNDKAMYSALCNDEGGIIDDLVTYKLNENHYLLIVNAANTNKDYQWIKKHSSNFTV---DVS-NTSDKYGQLAIQGPHSRALINELVDIDVSHMAMFEFKQNVQIFGKSIILSQSGYTGEDGFEIYCKQE 206          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_STAEQ (Aminomethyltransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gcvT PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.757e-25
Identity = 75/208 (36.06%), Postives = 107/208 (51.44%), Query Frame = 2
Query:  191 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFGEFR-ILDINGVSSLLTXTGSTGEDGFEISVPSE 811
            +LKKT L+  +V +G K+V F GW+MP+Q+  SI E     R N  LFDVSHM  + + GKD   F++ ++  D   L       +   N+ GG IDD V  K+ ++H  L+VNA   +KD   I+ H  +FT    DVS +  D+                 L   D+S +   EF+  + I G S +L+ +G TGEDGFEI    E
Sbjct:    4 DLKKTPLYQNYVDSGAKIVEFGGWAMPVQFS-SIKEEHNAVRYNVGLFDVSHMGEIEISGKDAEQFIQYILSNDTNLLTNDKAMYSALCNDEGGIIDDLVTYKLNENHYLLIVNAANTNKDYQWIKKHSSNFTV---DVS-NTSDKYGQLAIQGPHSRALINELVDIDVSHMAMFEFKQNVQIFGKSIILSQSGYTGEDGFEIYCKQE 206          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_PROVI (Aminomethyltransferase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=gcvT PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.757e-25
Identity = 71/216 (32.87%), Postives = 105/216 (48.61%), Query Frame = 2
Query:  194 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSXXXXXXXXXXXXXQHLTKDDLSKLYFGEFRILDINGVSSLLTXTGSTGEDGFEISVPSEPAGGPXQAIL 841
            +KKT+L  +H   G K++ F GW MP+QY   IM      R    LFDVSHM    +KG+  + FL+ +   D++    G    T+   ENGG +DD +I ++     +L+VNAG  DKD A +E H  +F  +G  +S H                   + + + D  +L    FR L   G   ++  TG TGE G EI +P+  A    +A+L
Sbjct:    1 MKKTSLSSWHEKAGAKIIDFGGWLMPVQYS-GIMAEHKAVRSAAGLFDVSHMGNFYVKGRRALEFLQSVTTNDLSRTVDGQAQYTIMLYENGGIVDDLIIYRIDSVTFFLIVNAGNCDKDFAWLEEHAGAF--EGVQLSNHSDQLSLIALQGPKAFSILSRVIPEIDADRLPSFHFRQLPFMGAELMVARTGYTGEAGVEICLPNALAQPLWEALL 213          
BLAST of EY659467 vs. ExPASy Swiss-Prot
Match: GCST_BACSU (Aminomethyltransferase OS=Bacillus subtilis GN=gcvT PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 6.757e-25
Identity = 74/210 (35.24%), Postives = 110/210 (52.38%), Query Frame = 2
Query:  194 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSW-HIHDERSXXXXXXXXXXXXXQHLTKDDLSKLY-FGEFRILDINGVSSLLTXTGSTGEDGFEISVPSEPA 817
            LK+T L D +   GGK + F GW +P+Q+  SI +     R    LFDVSHM  + + G D + FL++L+  DV+ L PG    T     +GG++DD +I +  ++   LV+NA   DKDLA ++ H        GDV   +  D+ +             ++LT  D+S L  F      DI+G  +L++ TG TGEDG+EI   S+ A
Sbjct:    2 LKRTPLFDLYKEYGGKTIDFGGWELPVQFS-SIKKEHEAVRTAAGLFDVSHMGEVEVSGNDSLSFLQRLMTNDVSALTPGRAQYTAMCYPDGGTVDDLLIYQKGENRYLLVINASNIDKDLAWMKEH------AAGDVQIDNQSDQIALLAVQGPKAEAILKNLTDADVSALKPFAFIDEADISGRKALISRTGYTGEDGYEIYCRSDDA 204          
The following BLAST results are available for this feature:
BLAST of EY659467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_LISMC3.961e-2533.49Aminomethyltransferase OS=Listeria monocytogenes s... [more]
GCST_CLOBK3.961e-2535.27Aminomethyltransferase OS=Clostridium botulinum (s... [more]
GCST_XYLFT5.174e-2534.65Aminomethyltransferase OS=Xylella fastidiosa (stra... [more]
GCST_XYLF25.174e-2534.65Aminomethyltransferase OS=Xylella fastidiosa (stra... [more]
GCST_XYLFM6.757e-2534.65Aminomethyltransferase OS=Xylella fastidiosa (stra... [more]
GCST_XYLFA6.757e-2534.65Aminomethyltransferase OS=Xylella fastidiosa GN=gc... [more]
GCST_STAES6.757e-2536.06Aminomethyltransferase OS=Staphylococcus epidermid... [more]
GCST_STAEQ6.757e-2536.06Aminomethyltransferase OS=Staphylococcus epidermid... [more]
GCST_PROVI6.757e-2532.87Aminomethyltransferase OS=Prosthecochloris vibriof... [more]
GCST_BACSU6.757e-2535.24Aminomethyltransferase OS=Bacillus subtilis GN=gcv... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-D11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659467 ID=EY659467; Name=EY659467; organism=Citrus sinensis; type=EST; length=884bp
CCTGGTATTGCTCTTTCGGGCTCCCANATTTGCTTGTTTCTGAGATAAAG
AAGAAAACCCCATCTCTATATTTATATCGAATAAAATGAGAGGAGGGAGT
CTGTGGCAGCTTGGACAATCGATCACCCGTCGTTTGGCTCGGGCTGATAA
GAAGACTATAGCTCGTAGACACTTTGCCTCAGATGCTGAAAACCTGAAAA
AAACTGCCCTTCATGACTTTCATGTGGCTAATGGTGGAAAGATGGTTCCA
TTTGCTGGATGGAGCATGCCTATTCAGTACAAGGACTCAATTATGGAATC
TACTTTGAATTGTCGGCAGAATGGTAGTCTCTTTGATGTCTCCCATATGT
GTGGGCTGAGCCTCAAAGGGAAGGATTGCGTCCCTTTCCTTGAGAAGCTT
GTGATCGCTGATGTTGCTGGACTTGCCCCAGGAACTGGGACTCTTACAGT
CTTTACAAATGAAAATGGGGGTTCAATCGATGATTCAGTTATTACCAAGG
TGAAGGATGATCACATATACCTTGTTGTGAATGCTGGCTGCAGGGATAAG
GATCTTGCTCACATTGAGGCACATATGAAGAGTTTCACAGCCAAAGGGGG
GGATGTCTCGTGGCACATCCATGATGAGAGATCTCTTCTTGCCCTTCANG
GCCCCCTTGCTGCCCCAGTTCTTCAACACCTGACAAAAGATGACTTGAGC
AAGTTATACTTCGGGGAATTCCGAATTTTGGATATAAATGGTGTATCCTC
GCTTCTCACTANGACAGGGTCCACTGGTGAAGATGGATTTGAAATCTCTG
TTCCATCTGAGCCGGCCGGGGGACCTTGNCAAGCCATTCTGAAGAATCTG
AAGGAAGGTGAGGTGGCAGGTCTTGTTGCCTCAG
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