EY659449

Overview
NameEY659449
Unique NameEY659449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7481 contig Csv1_Contig7481:1..890. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659449 vs. ExPASy Swiss-Prot
Match: SGCE_ECOLI (Protein sgcE OS=Escherichia coli (strain K12) GN=sgcE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.621e-18
Identity = 65/215 (30.23%), Postives = 101/215 (46.98%), Query Frame = 2
Query:   59 IIVSPSILSANFAKLVEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLTQIKSLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLENGVNPWIEVDGGVGPKNAX*XIEAGRYALGAGSAVFGAKDYAEAIKGIKT 703
            +I+ PS+ SAN      ++ A++      +H+D+ D  F+ NIT G   V A+   T  PL  H M+  P++      +     + VH E     +   TLT+I+  GA+AG+V NPAT + A   +   +D V++M+  P   GQ FI S  +KI  +R    +     W   DGG+    A     AG   +  G A+F + DY   +    T
Sbjct:    1 MILHPSLASANPLHYGRELTALDNLDFGSLHLDIEDSSFINNITFGMKTVQAVARQTPHPLSFHFMLARPQRWFNALAEIRPAWIFVHAETLD--YPSETLTEIRHTGARAGLVFNPATPIDAWRYLASELDGVMVMTSEPDGQGQRFIPSMCEKIQKVRTAFPQ--TECW--ADGGITLAAAQQLAAAGAQHMVIGRALFSSSDYRATLAQFAT 209          
BLAST of EY659449 vs. ExPASy Swiss-Prot
Match: LSRE_SALPA (Putative epimerase lsrE OS=Salmonella paratyphi A GN=lsrE PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.835e-16
Identity = 62/215 (28.84%), Postives = 106/215 (49.30%), Query Frame = 2
Query:   65 VSPSILSANFAKLVEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLT-----QIKSLGAKA----GVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLENGVNPWIEVDGGVGPKNAX*XIEAGRYALGAGSAVFGAKDYAE 682
            +S  IL+  +  L   ++ +E      +H+D+MDG+F P  T+GP  V+ L P T +  DVHLM+ +        +KAGA  +++  E    IHLH TL+      +  +G +     G+ L PAT L  I  +L  V+++ +++VNPG+G +       ++++ L  +  +      I +DG +        I  G   + +GSA+F     AE
Sbjct:   22 LSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVEQL-PQTFIK-DVHLMVADQWTAAQACVKAGAHCITLQAE--GDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALFRDDRLAE 232          
BLAST of EY659449 vs. ExPASy Swiss-Prot
Match: LSRE_SALTY (Putative epimerase lsrE OS=Salmonella typhimurium GN=lsrE PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.861e-15
Identity = 60/208 (28.85%), Postives = 103/208 (49.52%), Query Frame = 2
Query:   65 VSPSILSANFAKLVEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLT-----QIKSLGAKA----GVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLENGVNPWIEVDGGVGPKNAX*XIEAGRYALGAGSAVF 661
            +S  IL+  +  L   ++ +E      +H+D+MDG+F P  T+GP  V  L P T +  DVHLM+ +        +KAGA  +++  E    IHLH TL+      +  +G +     G+ L PAT L  I  +L  V+++ +++VNPG+G +       ++++ L  +  +      I +DG +        I  G   + +GSA+F
Sbjct:   22 LSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQL-PQTFIK-DVHLMVADQWTAAQACVKAGAHCITLQAE--GDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALF 225          
BLAST of EY659449 vs. ExPASy Swiss-Prot
Match: LSRE_SALTI (Putative epimerase lsrE OS=Salmonella typhi GN=lsrE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.861e-15
Identity = 59/208 (28.37%), Postives = 101/208 (48.56%), Query Frame = 2
Query:   65 VSPSILSANFAKLVEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLTQIKS---------LGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLENGVNPWIEVDGGVGPKNAX*XIEAGRYALGAGSAVF 661
            +S  IL+  +  L   ++ +E      +H+D+MDG+F P  T+GP  V  L P T +  DVHLM+ +        +KAGA  +++  E    IHLH TL+ +           +    G+ L PAT L  I  +L  V+++ +++VNPG+G +       ++++ L  +  +      I +DG +        I  G   + +GSA+F
Sbjct:   22 LSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQL-PQTFIK-DVHLMVADQWAAAQACVKAGAHCITLQAE--GDIHLHHTLSWLGQQTVPVIDGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLYERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALF 225          
BLAST of EY659449 vs. ExPASy Swiss-Prot
Match: LSRE_SALPB (Putative epimerase lsrE OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=lsrE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.861e-15
Identity = 60/208 (28.85%), Postives = 103/208 (49.52%), Query Frame = 2
Query:   65 VSPSILSANFAKLVEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLT-----QIKSLGAKA----GVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLENGVNPWIEVDGGVGPKNAX*XIEAGRYALGAGSAVF 661
            +S  IL+  +  L   ++ +E      +H+D+MDG+F P  T+GP  V  L P T +  DVHLM+ +        +KAGA  +++  E    IHLH TL+      +  +G +     G+ L PAT L  I  +L  V+++ +++VNPG+G +       ++++ L  +  +      I +DG +        I  G   + +GSA+F
Sbjct:   22 LSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQL-PQTFIK-DVHLMVADQWTAAQACVKAGAHCITLQAE--GDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALF 225          
BLAST of EY659449 vs. ExPASy Swiss-Prot
Match: LSRE_SALCH (Putative epimerase lsrE OS=Salmonella choleraesuis GN=lsrE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.861e-15
Identity = 60/208 (28.85%), Postives = 103/208 (49.52%), Query Frame = 2
Query:   65 VSPSILSANFAKLVEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLT-----QIKSLGAKA----GVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLENGVNPWIEVDGGVGPKNAX*XIEAGRYALGAGSAVF 661
            +S  IL+  +  L   ++ +E      +H+D+MDG+F P  T+GP  V  L P T +  DVHLM+ +        +KAGA  +++  E    IHLH TL+      +  +G +     G+ L PAT L  I  +L  V+++ +++VNPG+G +       ++++ L  +  +      I +DG +        I  G   + +GSA+F
Sbjct:   22 LSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQL-PQTFIK-DVHLMVADQWTAAQACVKAGAHCITLQAE--GDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALF 225          
The following BLAST results are available for this feature:
BLAST of EY659449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SGCE_ECOLI1.621e-1830.23Protein sgcE OS=Escherichia coli (strain K12) GN=s... [more]
LSRE_SALPA9.835e-1628.84Putative epimerase lsrE OS=Salmonella paratyphi A ... [more]
LSRE_SALTY2.861e-1528.85Putative epimerase lsrE OS=Salmonella typhimurium ... [more]
LSRE_SALTI2.861e-1528.37Putative epimerase lsrE OS=Salmonella typhi GN=lsr... [more]
LSRE_SALPB2.861e-1528.85Putative epimerase lsrE OS=Salmonella paratyphi B ... [more]
LSRE_SALCH2.861e-1528.85Putative epimerase lsrE OS=Salmonella choleraesuis... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-C05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659449 ID=EY659449; Name=EY659449; organism=Citrus sinensis; type=EST; length=888bp
GAGAATTTTTACTATAGTGAAGGCATCAGCTCGCGCGGATAAGTTCTCGA
AAAGTGATATTATTGTTTCTCCATCTATTCTCTCTGCTAATTTCGCGAAG
TTAGTCGAGCAGGTAAAAGCAGTGGAATTGGCTGGTTGTGATTGGATTCA
TGTTGATGTCATGGATGGTCGTTTTGTTCCAAACATTACAATTGGACCTC
TTGTGGTTGATGCTTTGCGCCCTGTGACAGACCTTCCTTTGGATGTTCAT
TTGATGATTGTCGAACCTGAACAACGAGTGCCTGATTTTATCAAGGCTGG
AGCTGACATAGTCAGCGTCCACTGTGAGCAATCATCCACTATTCATTTGC
ACCGCACTCTTACCCAAATAAAAAGTTTGGGAGCTAAAGCTGGAGTTGTC
CTCAACCCTGCTACCTCACTGAGTGCAATAGAATGTGTCCTTGATGTGGT
TGATCTTGTCTTGATCATGTCGGTGAACCCTGGCTTTGGTGGGCAAAGCT
TTATTGAGAGCCAAGTAAAAAAAATCTCAGACTTGAGAAGAATGTGTTTA
GAGAATGGAGTAAACCCATGGATTGAAGTAGATGGTGGAGTAGGTCCGAA
AAATGCATANTAGGNTATTGAAGCTGGGCGCTATGCCTTGGGTGCTGGTT
CAGCTGTCTTTGGAGCTAAAGATTATGCTGAAGCTATAAAGGGAATAAAA
ACCAGCAAAGGCCANAAGCAGTTGCAGTGTGAACAGATGATTACAAAAGG
ACTGATTAGATTCATTCTGCAGTATCTGTATCACCCACCTATGCCCAGTA
ATTANTCGCCTATTGCTTGGTCATGTCGTTGGCAGAATCATCTCCCTTCT
GGGGCGGTCCCTGTTGTTGGGGAGGTACTATAAAAATC
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