EY659440

Overview
NameEY659440
Unique NameEY659440
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659440 vs. ExPASy Swiss-Prot
Match: TIG_DEHE1 (Trigger factor OS=Dehalococcoides ethenogenes (strain 195) GN=tig PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.221e-16
Identity = 61/233 (26.18%), Postives = 122/233 (52.36%), Query Frame = 3
Query:  117 PGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALS--SPKAVKEFLENQTENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVE----NSIAELKQQKPEYDEGSRREQVIDILEGS*SLEWVRDM 797
            PGF + +  +  GE K F + FPE   +  L G  A F V  +E+    LP+L+D+ A +L P   T+ ++++ + +  +E +        ++ I++ L KM +ID P+ + E +  Q+   QL ++Q+ +K  E+  A LS  SP  +++      E     +  +LA+G +   ENL  S E++  E+E    +S  + +++K  Y++   R+++I +L    ++ ++ ++
Sbjct:  195 PGFGEHLVDMVVGEPKEFSIVFPEDHARAELAGKTAAFKVTIQEIREEKLPELNDAFAHELNPEFNTLAELRQRIRENMQERQDDQAQAKFEDQIVEALIKMSKIDYPEVMVETELDQIIEQQLQRLQSTIKSPEEFRATLSQLSPADMQQRYRPLAE---QRVASSLALGKLATTENLIPSDEEVDAEIERLTQDSGDKKEEEKAFYNKPDTRDRLIQLLTARKTMAFIDEI 424          
BLAST of EY659440 vs. ExPASy Swiss-Prot
Match: TIG_SYNR3 (Trigger factor OS=Synechococcus sp. (strain RCC307) GN=tig PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.595e-16
Identity = 64/270 (23.70%), Postives = 134/270 (49.63%), Query Frame = 3
Query:   12 ISATTIDADESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQM-QAGMKLNEQQLAALSSPKAVKEFLENQTENITNVIKQNLAVGDIFKRENLQFSTEDL---VKEVENSIAELKQQKPEYDEGSRREQVIDILEGS*SLEWVRDMQKIS 809
            +S + + +D+ +   I      G   + E+G +++ GF++ + G++ G+ K     FP+ + +E  RG +A F++   EL  R+LP+LDD+ A +      T+ +++E L  + ++  +  +      A+L  L   +E+++P+SL +E+   L      QM Q GM + +     L +P+ V+   +      T  ++++LA+  + K E +  + +DL   +KEV    ++  +  P+      R+ V + L     L W+ +  K++
Sbjct:  178 VSFSGVFSDDKSA--IEGGSANGLDVELEEG-RMISGFVEGVVGMKPGDKKDVDCQFPDDYPEETCRGRKALFSISLDELKGRELPELDDAFA-QQASDKKTLSELREDLENRLKQDAEQRQKNNRHEALLKALVDQLEVELPESLIKEEINSLLQETAAQMAQQGMDVKK-----LFTPETVQNLAQASRGEATERLQRSLALKALAKAEGISVADKDLEAKIKEVSAGFSDTNKIDPQ----RLRDAVAEDLLRETLLSWLEENAKLT 434          
BLAST of EY659440 vs. ExPASy Swiss-Prot
Match: TIG_BACSK (Trigger factor OS=Bacillus clausii (strain KSM-K16) GN=tig PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.595e-16
Identity = 59/205 (28.78%), Postives = 109/205 (53.17%), Query Frame = 3
Query:  114 LPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFE-EQGRQLYG-AQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQ-TENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQQKPE 719
            +PGF + + G++ GE K   + FPE +  E L G  A F V+  ++  ++LP+LDD  A  +     T++++K  L     E ++TA + A  +++L++  +  EI++P+++ E E  R L    Q LQ Q GM L+             +E + NQ  E+    ++ NL +  I + EN++ S E++ +E +  +A++ Q+  E
Sbjct:  197 IPGFEEQLVGLKSGEEKDVEVTFPEEYHAEELAGKPATFKVKVHDIKRKELPELDDEFAKDVNEKVETLDELKNELRSTLEEQKKTASENAVRDSLLEKAAEQAEINVPEAMIETETDRMLQEFGQRLQAQ-GMNLD----MYFQFSGQTEEDMRNQFKEDAEKRVRVNLTLEAIAEAENVEVSEEEIEEEFQ-KMADMYQRSVE 395          
BLAST of EY659440 vs. ExPASy Swiss-Prot
Match: TIG_SYNPX (Trigger factor OS=Synechococcus sp. (strain WH8102) GN=tig PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.083e-16
Identity = 66/257 (25.68%), Postives = 131/257 (50.97%), Query Frame = 3
Query:   66 AETKGFHFDTEDGD----KVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQA----TDN---AILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQTENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQQ---KPEYDEGSRREQVIDILEGS*SLEWVRD 794
            +E +G   D+ D D    +++PGF++ + G+  G++K+    FP+ + +E  RG +A F +E ++L  R+LP+L+D+ A +           +ETL +  +E+EQ  KD A    T N   A++  L + +E+++P++L +++ R L    L Q  A        + +L +P  V+  ++N        ++++ A+  + + E +  S ED    V+  I E+K++     + D    R+ V+D L     + W+ +
Sbjct:  190 SEIEGGSADSMDVDLEHGRMIPGFIEGVIGMAVGDSKTVDCQFPDDYPKEDARGRKAAFEIELKDLKTRELPELNDAFAKQ--------ASEQETLAELRQELEQRLKDDAERRQTSNRRDALIGALVEQLEVELPEALIQQESRNL----LEQTAAQFAQQGMDVKSLFTPDLVRNLMQNSRPEAEERLRRSFALTALAEAEGI--SVED--DAVDAKIKEVKKELAADAKIDPQRLRQAVMDDLIQEQLMSWLEE 430          
BLAST of EY659440 vs. ExPASy Swiss-Prot
Match: TIG_GEOTN (Trigger factor OS=Geobacillus thermodenitrificans (strain NG80-2) GN=tig PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.554e-16
Identity = 65/233 (27.90%), Postives = 109/233 (46.78%), Query Frame = 3
Query:    6 VDISATTIDADESNVQNIPDAETKGFHFDTEDGDKV-LPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGA--QLLQMQAGMKLNEQQLAALSSPKAVKEFLENQTENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIA 695
            V+   T +   E  V   P    K  ++  E G    +PGF D + G++ GE K  ++ FPE +  E L G  A F V+  E+  + LP LDD  A  +     T++++K  +  +  E ++   + A  NA++++     EIDIP  + + +  ++     Q LQMQ GM L   QL    S +      E   E+    ++  L +  I K EN+  + E++ +E+E   A
Sbjct:  160 VENGDTAVIDFEGFVDGEPFEGGKAENYSLEIGSGTFIPGFEDQLVGMKAGEEKEIQVTFPEEYHAEQLAGKPATFKVKVHEVKAKQLPALDDEFAKDVDEEVETLDELKSKIRTRLEEAKKNEAEAAVRNAVVEKAAANAEIDIPAVMVQNETDRMLREFDQRLQMQ-GMNL---QLYYQFSGQDEAALREQMKEDAEKRVRAALTLEAIAKAENIDVTDEEVNEELEKMAA 388          
BLAST of EY659440 vs. ExPASy Swiss-Prot
Match: TIG_BACHD (Trigger factor OS=Bacillus halodurans GN=tig PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.554e-16
Identity = 60/215 (27.91%), Postives = 111/215 (51.63%), Query Frame = 3
Query:   75 KGFHFDTEDGD-KVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYG--AQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQTENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQQ 710
            K  ++  E G  + +PGF D + G++ GE K   + FPE +  E L G  A F V+  ++  ++LP+LDD  A  +     +++++K+ L +K  +      D    + ++ +  +   IDIP+++   +  ++     Q LQMQ GM L   ++    S +  ++  E   E+    ++ NL +  I  +ENL+ S ED+ KE+E  +AE+ Q+
Sbjct:  183 KAENYSLEIGSGQFIPGFEDQLVGLKAGEEKDVEVTFPEEYHAEELAGKPATFKVKIHDVKRKELPELDDEFAKDVDEEVESLDELKKKLREKLEKDRAHEADHEKRDTLIQKASENATIDIPEAMINTELDRMTQEFEQRLQMQ-GMNL---EMYFQFSGQTQEQLREQMKEDAEKRVRVNLTLEAIANQENLEASDEDVEKELE-KMAEMYQR 392          
BLAST of EY659440 vs. ExPASy Swiss-Prot
Match: TIG_AKKM8 (Trigger factor OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=tig PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.917e-16
Identity = 55/219 (25.11%), Postives = 110/219 (50.23%), Query Frame = 3
Query:   99 DGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQTENITNVIKQNLAV----GDIFKRENLQFSTEDLVKEVENSIAELKQQKPEYDEGSRRE 743
            + D+ LPGF  ++ G+  G++K   +  P+++    LRG +  F    +E+  + LP +DD+ A K+LPG   +E++K  L +   + +    D+A  + I ++L  M++ ++P+++ E   R++YG    +MQ       Q + + ++P  + +F+E   E      K+NL V     ++ + E +  +  +L  EV     + K+    Y    +RE
Sbjct:  199 EDDQFLPGFASALEGLNAGDSKDITVTIPDTFPITELRGKELVFHATVKEVREKQLPAMDDAFAEKVLPG-KNLEELKTALKENLAQRKAMQIDEAKADQITEKLADMLDFNLPEAVVE---REVYGILQQKMQ-------QAMYSGNAPADMDKFVEEAREEAKQEAKRNLKVFFMLQEVAQVEKIAVTEMELYNEVARQARQQKKNLKSYIRELQRE 406          
BLAST of EY659440 vs. ExPASy Swiss-Prot
Match: TIG_ONYPE (Trigger factor OS=Onion yellows phytoplasma GN=tig PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.764e-15
Identity = 59/226 (26.11%), Postives = 111/226 (49.12%), Query Frame = 3
Query:   75 KGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKL-LPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQL---YGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQTENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVEN-------SIAELKQQKPE 719
            K F  +   G  V PGF D + G+++G+TK   + FP  + Q+ L   +A F V   ++  + +P+L D+L   L L   +T+E++K    Q     ++  + +  +  +++QL K  E++IPQ +  ++  +L   + AQL Q    ++  +Q L  +   K  KEF +   +N    I+  L +  +  +E L  S E + ++ +N        + ++KQ  PE
Sbjct:  187 KDFSLEIGSGQFV-PGFEDQMLGMKQGQTKDINITFPSDYHQKSLANQKAVFKVTLHQIKTKKIPQLTDNLVKSLKLVNASTVEELKNNTKQTLLAQKKHKEKENVEKQVIEQLVKNSELEIPQEIVSQEQIRLQKEFEAQLKQQNLTLEQYKQYL-GIDDEKMEKEFSQQAQKN----IEYQLIMEQVAAQEKLTISQEKIEQKYQNLSNHYKVPVNQIKQNLPE 406          
BLAST of EY659440 vs. ExPASy Swiss-Prot
Match: TIG_NATTJ (Trigger factor OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=tig PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.304e-15
Identity = 55/207 (26.57%), Postives = 108/207 (52.17%), Query Frame = 3
Query:  105 DKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYG--AQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQTENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQQKPE 719
            ++ +PGF + + G + GE K  ++ FPE ++ E L+G +A F V+ +E+  ++L  +DD  A K +    T+E+ K  +  +  E  + A +Q  +  ++ +  +  E++IPQ + +++   +     Q L  Q G+ L+     A +   A+KE  +   E     +K+NL +  I   E +  + E++ +E+ N IAE  QQ+ +
Sbjct:  194 NQFIPGFEEQLVGSKPGEEKEVKVTFPEDYQNEELKGKEATFNVKVKEIKKKNLLPIDDEFA-KDVSDFDTLEEFKNDIRNRLEEEAERAAEQQVEEQVVTKALENAEVEIPQPMIDQEVDNMLKEFEQNLSYQ-GLNLDTYYKLANTDEDAMKEQFKGSAE---TRVKRNLVLEAIKDEEGITATEEEIDEEI-NKIAEQAQQEAD 394          
BLAST of EY659440 vs. ExPASy Swiss-Prot
Match: TIG_BACSU (Trigger factor OS=Bacillus subtilis GN=tig PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 3.009e-15
Identity = 58/191 (30.37%), Postives = 95/191 (49.74%), Query Frame = 3
Query:  114 LPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFE-EQGRQLYG-AQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQTENITNVIKQNLAVGDIFKRENLQFSTEDLVKEV 680
            +PGF D + G++ G  K   + FPE +  E L G  A F V+  E+  ++LP+LDD  A  +     T+ ++ E   ++  E ++   D      ++ +  +  EID+PQ++ + E  R L    Q LQMQ GM L      +     A+KE ++   E     +K NL +  I K ENL+ S E++  E+
Sbjct:  197 IPGFEDQLVGLEAGAEKDVEVTFPEEYHAEDLAGKPAVFKVKIHEIKAKELPELDDEFAKDIDEEVETLAELTEKTKKRLEEAKENEADAKLREELVLKASENAEIDVPQAMVDTELDRMLKEFEQRLQMQ-GMNLELYTQFSGQDEAALKEQMKEDAE---KRVKSNLTLEAIAKAENLEVSDEEVDAEL 383          
The following BLAST results are available for this feature:
BLAST of EY659440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
TIG_DEHE11.221e-1626.18Trigger factor OS=Dehalococcoides ethenogenes (str... [more]
TIG_SYNR31.595e-1623.70Trigger factor OS=Synechococcus sp. (strain RCC307... [more]
TIG_BACSK1.595e-1628.78Trigger factor OS=Bacillus clausii (strain KSM-K16... [more]
TIG_SYNPX2.083e-1625.68Trigger factor OS=Synechococcus sp. (strain WH8102... [more]
TIG_GEOTN3.554e-1627.90Trigger factor OS=Geobacillus thermodenitrificans ... [more]
TIG_BACHD3.554e-1627.91Trigger factor OS=Bacillus halodurans GN=tig PE=3 ... [more]
TIG_AKKM87.917e-1625.11Trigger factor OS=Akkermansia muciniphila (strain ... [more]
TIG_ONYPE1.764e-1526.11Trigger factor OS=Onion yellows phytoplasma GN=tig... [more]
TIG_NATTJ2.304e-1526.57Trigger factor OS=Natranaerobius thermophilus (str... [more]
TIG_BACSU3.009e-1530.37Trigger factor OS=Bacillus subtilis GN=tig PE=1 SV... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-B07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659440 ID=EY659440; Name=EY659440; organism=Citrus sinensis; type=EST; length=920bp
CAATCGTTGATATATCAGCAACAACAATAGATGCAGATGAATCAAATGTT
CAAAATATTCCAGATGCAGAGACCAAAGGATTTCATTTTGATACAGAAGA
TGGGGACAAAGTTCTTCCAGGTTTTCTTGATTCTATAAGTGGAATTCAAC
GAGGTGAAACAAAGTCCTTTCGACTCGCATTCCCTGAATCCTGGAGACAA
GAACATCTTCGTGGTGTTCAAGCTCAATTTACTGTTGAATGCAGAGAACT
GTTTTATAGAGATTTGCCGAAATTGGATGACTCCCTTGCTGGAAAGCTTC
TTCCTGGATGCACTACCATAGAGCAGGTCAAGGAAACATTATTGCAGAAG
TGTCGAGAAGTGGAGCAAACTGCAAAAGACCAGGCGACTGATAATGCAAT
TCTAGACCAGCTTTACAAGATGGTGGAAATTGATATTCCTCAATCCTTGT
TTGAGGAACAAGGAAGGCAGCTTTATGGGGCTCAACTTTTGCAGATGCAG
GCAGGTATGAAATTGAACGAACAGCAGTTGGCTGCTCTATCAAGCCCAAA
AGCAGTAAAAGAGTTTCTGGAAAACCAGACGGAGAACATAACCAATGTGA
TAAAACAGAATCTAGCCGTCGGAGATATCTTTAAACGTGAAAATTTGCAG
TTTTCGACTGAAGACTTAGTCAAAGAAGTTGAAAACTCCATTGCTGAATT
AAAACAACAGAAACCAGAATATGATGAGGGATCGCGTAGAGAACAGGTGA
TAGACATACTCGAAGGGAGCTAAAGTCTCGAATGGGTGAGAGACATGCAG
AAAATCAGTNCANACCCAGATGAGAACATACCCCATATATGAAAAGGAGC
TAGGAGTTGCAGGAGCCGGATTAAAATTGCATTGCAGAGCATTGGTGCTC
TGCAAATTTTGATTGAAAAA
back to top