EY659414

Overview
NameEY659414
Unique NameEY659414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659414 vs. ExPASy Swiss-Prot
Match: RBS_ANASP (Ribulose bisphosphate carboxylase small chain OS=Anabaena sp. (strain PCC 7120) GN=cbbS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.951e-20
Identity = 45/111 (40.54%), Postives = 69/111 (62.16%), Query Frame = 3
Query:  243 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 575
            +++ETLSYLPPL+D  + K++ Y+L  G+IP +EF            S P      YWT+WKLP++G   + +VL EV   + +YP  ++R++GFDN +Q Q +SF+  KP
Sbjct:    8 RRYETLSYLPPLTDVQIEKQVQYILSQGYIPAVEFN---------EVSEPTEL---YWTLWKLPLFGAKTSREVLAEVQSCRSQYPGHYIRVVGFDNIKQCQILSFIVHKP 106          
BLAST of EY659414 vs. ExPASy Swiss-Prot
Match: RBS_CYAPA (Ribulose bisphosphate carboxylase small chain OS=Cyanophora paradoxa GN=rbcS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.450e-19
Identity = 41/111 (36.94%), Postives = 69/111 (62.16%), Query Frame = 3
Query:  243 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 575
            +KFET SYLPPL+D+ + +++ Y L +G+ P +EF            S  G  +   WT+WKLP++G     +VL E+   ++++P++++R++ FD+ RQVQ + FL  KP
Sbjct:    7 RKFETFSYLPPLNDQQIARQLQYALSNGYSPAIEF------------SFTGKAEDLVWTLWKLPLFGAQSPEEVLSEIQACKQQFPNAYIRVVAFDSIRQVQTLMFLVYKP 105          
BLAST of EY659414 vs. ExPASy Swiss-Prot
Match: RBS2_THIFE (Ribulose bisphosphate carboxylase small chain 2 OS=Thiobacillus ferrooxidans GN=cbbS2 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.181e-18
Identity = 44/106 (41.51%), Postives = 62/106 (58.49%), Query Frame = 3
Query:  246 KFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFL 563
            KFETLSYLP L+ + + ++++Y++  GW P +E            H+ P    G YW MWKLPM+G TD   +LKE     K  PH+ VRI+G+DN +Q Q  S +
Sbjct:   18 KFETLSYLPALTADEIRQQVAYIVSKGWNPAVE------------HTEPENAFGNYWYMWKLPMFGETDVDTILKEAERCHKRNPHNHVRIVGYDNFKQSQGTSLV 111          
BLAST of EY659414 vs. ExPASy Swiss-Prot
Match: RBS_PSEHY (Ribulose bisphosphate carboxylase small chain OS=Pseudomonas hydrogenothermophila GN=cbbS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.030e-16
Identity = 41/111 (36.94%), Postives = 62/111 (55.86%), Query Frame = 3
Query:  243 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 575
            K+FET SYLP +S E + K+I Y++  GW P +E            H  P      YW MWKLPM+G TD  +++ E+   ++  P+  +++IG+DN RQ Q  + L  +P
Sbjct:   24 KRFETFSYLPQMSAEEIRKQIEYIVSKGWNPAIE------------HCEPENAILHYWYMWKLPMFGETDVDKIIAEIEACKRSNPNHLIKLIGYDNIRQTQGTAMLVYRP 122          
BLAST of EY659414 vs. ExPASy Swiss-Prot
Match: RBS1_CHRVI (Ribulose bisphosphate carboxylase small chain 1 OS=Chromatium vinosum GN=cbbS1 PE=1 SV=4)

HSP 1 Score: 84.7297 bits (208), Expect = 6.675e-16
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:  243 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQ 542
            +KFET SYLP +  + + K++ Y++  GW P +E            H+ P      YW MWKLPM+G TD   +LKE     K +P++ VR+IGFDN  Q
Sbjct:   17 RKFETFSYLPRMDADRIRKQVEYIVSKGWNPAIE------------HTEPENAFDHYWYMWKLPMFGETDIDTILKEAEACHKAHPNNHVRLIGFDNYAQ 104          
BLAST of EY659414 vs. ExPASy Swiss-Prot
Match: RBS_ALVHS (Ribulose bisphosphate carboxylase small chain OS=Alvinoconcha hessleri symbiotic bacterium GN=cbbS PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.487e-15
Identity = 42/112 (37.50%), Postives = 58/112 (51.79%), Query Frame = 3
Query:  243 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 578
            +KFET SYLP L  E + K++ Y++  GW P +E            H+ P      YW MWKLPM+G TD   +L E     K +P   VR+IG+DN  Q Q  + +  + P
Sbjct:   17 RKFETFSYLPELGVEKIRKQVEYIVSKGWNPAVE------------HTEPENAFDHYWYMWKLPMFGETDVDAILAEAEACHKAHPSHHVRLIGYDNYAQSQGTAMVIFRGP 116          
BLAST of EY659414 vs. ExPASy Swiss-Prot
Match: RBS2_CHRVI (Ribulose bisphosphate carboxylase small chain 2 OS=Chromatium vinosum GN=cbbS2 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.313e-15
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  246 KFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 575
            ++ET SYLPPL+ E +L++I Y+L +GW   LE            H  P      YW MWK+P +G  D   +L E+   ++ YP   VR++G+D   Q +  SFLA +P
Sbjct:   15 RYETFSYLPPLNREEILEQILYILDNGWNASLE------------HEHPDRAFEYYWPMWKMPFFGEQDPNVILTEIESCRRSYPDHHVRLVGYDTYAQSKGHSFLAHRP 112          
BLAST of EY659414 vs. ExPASy Swiss-Prot
Match: RBS_THIDA (Ribulose bisphosphate carboxylase small chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=cbbS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.327e-15
Identity = 39/102 (38.24%), Postives = 57/102 (55.88%), Query Frame = 3
Query:  243 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 548
            +KFET SYLP ++   + K++ YL+  GW P +E            H+ P +    YW MWKLPM+G TD  ++L E     K  P++ VR++G+DN  Q Q
Sbjct:   17 RKFETFSYLPAMNAADIRKQVEYLVSKGWNPAIE------------HTEPEHLMDSYWYMWKLPMFGETDIDRILGEAEACHKANPNNHVRLVGYDNFAQSQ 106          
BLAST of EY659414 vs. ExPASy Swiss-Prot
Match: RBS2_ACECL (Ribulose bisphosphate carboxylase small chain 2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.327e-15
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 3
Query:  387 SPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 578
            S  Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   FL  +PP
Sbjct:   10 SSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 73          
BLAST of EY659414 vs. ExPASy Swiss-Prot
Match: RBS1_HYDMR (Ribulose bisphosphate carboxylase small chain 1 OS=Hydrogenovibrio marinus GN=cbbS-1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.327e-15
Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = 3
Query:  243 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAK 572
            +K ET SYLP ++ + +  ++ Y++  GW P +E            HS P      YW MWKLPM+G TDA  VL EV    K  P++ VR+IG+DN  Q Q  + L  +
Sbjct:   17 RKAETFSYLPKMTTDQIKAQVEYIISKGWNPAIE------------HSEPENAFSYYWYMWKLPMFGDTDANVVLAEVDACIKANPNNHVRLIGYDNYAQSQGANMLVKR 114          
The following BLAST results are available for this feature:
BLAST of EY659414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS_ANASP9.951e-2040.54Ribulose bisphosphate carboxylase small chain OS=A... [more]
RBS_CYAPA6.450e-1936.94Ribulose bisphosphate carboxylase small chain OS=C... [more]
RBS2_THIFE4.181e-1841.51Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS_PSEHY1.030e-1636.94Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS1_CHRVI6.675e-1640.00Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS_ALVHS1.487e-1537.50Ribulose bisphosphate carboxylase small chain OS=A... [more]
RBS2_CHRVI3.313e-1537.27Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS_THIDA4.327e-1538.24Ribulose bisphosphate carboxylase small chain OS=T... [more]
RBS2_ACECL4.327e-1553.13Ribulose bisphosphate carboxylase small chain 2 (F... [more]
RBS1_HYDMR4.327e-1538.18Ribulose bisphosphate carboxylase small chain 1 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-H04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659414 ID=EY659414; Name=EY659414; organism=Citrus sinensis; type=EST; length=822bp
CCACGCGTCCGCAAAGCTAGAAGAAGGAGCAAGTACCAATGGCTTCCTCA
ATGATCTCATCGACCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCA
GGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCC
CAGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGGC
GGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTT
CGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGG
AAATCAGTTACCTTCTCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAG
TTGGAGAAAGGATGGGTGTACCGTGAGCACCACAGCTCACCAGGATACTA
CGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAG
ATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCA
CATTCATTCGTCCGAATTATCGGATTTGACAACAAGCGTCAAGTGCAGTG
CATCAGTTTCCTTGCTGCCAAGCCACCAGGCGTCTAGGTTCCCAATTAAA
TTTGTGTAACCACCCATGCAATATTGTTGATTATTATTATGTGTAACCCC
CATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTTTAATTTGTACT
TANGCTGCTGTTGCTGCTGCTCAAACTTTTTTGGTTTTCTCCCCGACTTT
GGCTTTTTTTTTTATATATAATTTAAAAAATGAATCCTTNGTTTTCAGTT
TCATTAAAAAAAAAAAAAAAAA
back to top