EY659414
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY659414 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1) HSP 1 Score: 227.254 bits (578), Expect = 8.327e-59 Identity = 101/162 (62.35%), Postives = 129/162 (79.63%), Query Frame = 3 Query: 96 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 581 + A+ VAPF GLKS++ P ++++N SNGGR++CM+VWP G+KKFETLSYLPPLS E LLK++ YL+RS W+PCLEF + G+++REH+ SPGYYDGRYWTMWKLPM+GC TQV+ EV EV+KEYP + RIIGFDN RQVQ +SF+A+KPPG Sbjct: 8 SSATSVAPFQGLKSTAGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFR-KVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVSFIASKPPG 168
BLAST of EY659414 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1) HSP 1 Score: 221.09 bits (562), Expect = 5.968e-57 Identity = 100/162 (61.73%), Postives = 130/162 (80.25%), Query Frame = 3 Query: 96 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 581 + A+ VAPF GLKS+++ P ++++ + ++ SNGGR++CM+VWP G KKFETLSYLPPLS + LLK++ YLLR+GWIPCLEF + G+VYRE+ +SP YYDGRYWTMWKLPM+GC DATQV KE+ E K YP +F R+IGFDN +Q QC+SF+A KPPG Sbjct: 9 SSATAVAPFQGLKSTASLPVARRSSRSLGNV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFS-KVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKPPG 168
BLAST of EY659414 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1) HSP 1 Score: 214.157 bits (544), Expect = 7.295e-55 Identity = 100/170 (58.82%), Postives = 129/170 (75.88%), Query Frame = 3 Query: 78 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 575 A A A++V+ FTGLKS++ FP++ K +N SNGGRV+CM+VWPP G KFETLSYLP L++E L+KE+ YLLR+ W+PCLEF+LE G + R+++ SPGYYDGRYW MWKLPM+GCT+A+QV+ EV E K YP +F+R+IGFDN RQVQCISF+ KP Sbjct: 2 ATGAGAGAATVVSAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170
BLAST of EY659414 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 1.797e-53 Identity = 105/187 (56.15%), Postives = 139/187 (74.33%), Query Frame = 3 Query: 39 MASSMIS-STTVATANRASLAQ---ASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 575 MASS+++ S+T A A A+ ++ +++V+ FTGLKS + FP++K +N SNG RV+CM+VWPP KKFETLSYLP L+ E L+KE+ YLL++ W+PCLEFE E G + R + +SPGYYDGRYW MWKLPM+GCT+A+QVL EV E K YP++F+R+IGFDN RQVQCISF+ KP Sbjct: 1 MASSIMALSSTAAVAAVAAPSKTGNSNVVSAFTGLKSMAQFPSSKTMSNAGAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFE-EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186
BLAST of EY659414 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 5.228e-53 Identity = 94/132 (71.21%), Postives = 108/132 (81.82%), Query Frame = 3 Query: 180 TSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 575 T I SNG RV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YLLR GW+PCLEFEL KG+VY EH+ SP YYDGRYWTMWKLPM+G TD QV+KEV EV YP +FVR+IGF+N RQVQCISF+A P Sbjct: 2 TDITSNGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCISFIAHTP 133
BLAST of EY659414 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 1.424e-50 Identity = 93/162 (57.41%), Postives = 121/162 (74.69%), Query Frame = 3 Query: 96 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 581 + A+ APF GLKS+++ P +++ + + SNGGR++CM+VWP G KKFETLSYLPPL+ E LLK++ YLLR+ W+PCLEF E G+VYRE+ +SP YYDGRYWTMWKLPM+GCTDA+QV KE+ E YP I+GFDN RQ Q ++F+A KP G Sbjct: 8 SSATAAAPFQGLKSTASLPVARRSTTSLAKV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKE-GFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQTQWLTFIAYKPAG 166
BLAST of EY659414 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 4.287e-47 Identity = 86/122 (70.49%), Postives = 101/122 (82.79%), Query Frame = 3 Query: 216 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 581 M+VWPP GLKKFETLSYLPPL+ E LL E++YLL GWIP LEFE++ G+VYREH SPGYYDGRYWTMWKLPM+G TD QV+ EV EV+K P +FVR IGF++KR+VQCISF+A KP G Sbjct: 1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISFIAYKPAG 122
BLAST of EY659414 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 1.167e-44 Identity = 78/107 (72.90%), Postives = 96/107 (89.72%), Query Frame = 3 Query: 261 SYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 581 +YLPPLS EALLK++ YL+RS W+PCLEF + G+++REH++SPGYYDGRYWTMWKLPM+GCTDATQV+ EV EV+KEYP ++VRIIGFDN RQVQC+SF+A KPPG Sbjct: 1 AYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 106
BLAST of EY659414 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 4.905e-43 Identity = 84/178 (47.19%), Postives = 116/178 (65.17%), Query Frame = 3 Query: 45 SSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEY-PHSFVRIIGFDNKRQVQCISFLAAKP 575 +S+++S V T AS A + + +++ + T +NG RV CM+VW P KFETLSYLPPLS +AL K+I Y+++SGW PC+EF+++ G V RE + PGYYDGRYWTMWKLPM+GCTD+ VL+E+ E +K Y ++R +GFDN RQVQC SF+ +P Sbjct: 2 ASVVASAAVVTPFAASAASTTKSSQIVSVQAGLKAGVFGGKSEWQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQP 178
BLAST of EY659414 vs. ExPASy Swiss-Prot
Match: RBS_EUGGR (Ribulose bisphosphate carboxylase small chains, chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 1.025e-32 Identity = 64/128 (50.00%), Postives = 87/128 (67.97%), Query Frame = 3 Query: 216 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHH-----SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 581 MKVW P KKFET SYLPPLSD + K++ ++ G PCLEF E ++ ++ ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 135 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 262 HSP 2 Score: 140.584 bits (353), Expect = 1.025e-32 Identity = 64/128 (50.00%), Postives = 87/128 (67.97%), Query Frame = 3 Query: 216 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHH-----SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 581 MKVW P KKFET SYLPPLSD + K++ ++ G PCLEF E ++ ++ ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 279 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 406 HSP 3 Score: 140.584 bits (353), Expect = 1.025e-32 Identity = 64/128 (50.00%), Postives = 87/128 (67.97%), Query Frame = 3 Query: 216 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHH-----SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 581 MKVW P KKFET SYLPPLSD + K++ ++ G PCLEF E ++ ++ ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 566 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 693 HSP 4 Score: 140.584 bits (353), Expect = 1.025e-32 Identity = 64/128 (50.00%), Postives = 87/128 (67.97%), Query Frame = 3 Query: 216 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHH-----SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 581 MKVW P KKFET SYLPPLSD + K++ ++ G PCLEF E ++ ++ ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 709 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 836 HSP 5 Score: 140.584 bits (353), Expect = 1.025e-32 Identity = 64/128 (50.00%), Postives = 87/128 (67.97%), Query Frame = 3 Query: 216 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHH-----SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 581 MKVW P KKFET SYLPPLSD + K++ ++ G PCLEF E ++ ++ ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 997 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 1124 HSP 6 Score: 138.658 bits (348), Expect = 3.895e-32 Identity = 63/128 (49.22%), Postives = 86/128 (67.19%), Query Frame = 3 Query: 216 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHH-----SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 581 MKVW P KKFET SYLPPLSD + K++ ++ G PCLEF E ++ ++ ++ GYYD YWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 422 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNHYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 549 HSP 7 Score: 138.658 bits (348), Expect = 3.895e-32 Identity = 63/126 (50.00%), Postives = 86/126 (68.25%), Query Frame = 3 Query: 216 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHH-----SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 575 MKVW P KKFET SYLPPLSD + K++ ++ G PCLEF E ++ ++ ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P Sbjct: 1141 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRP 1266 HSP 8 Score: 136.346 bits (342), Expect = 1.933e-31 Identity = 64/128 (50.00%), Postives = 87/128 (67.97%), Query Frame = 3 Query: 216 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHH-----SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 581 MKVW P KKFET SYLPPLSD + K++ ++ G PCLEF E ++ ++ ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR + FD+ +QVQ ISF+ +P G Sbjct: 854 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVR-LAFDSVKQVQVISFVVQRPSG 980 The following BLAST results are available for this feature:
BLAST of EY659414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 127
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY659414 ID=EY659414; Name=EY659414; organism=Citrus sinensis; type=EST; length=822bpback to top |