EY659410

Overview
NameEY659410
Unique NameEY659410
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:136..1023. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659410 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBK (Elongation factor Tu OS=Clostridium botulinum (strain Okra / Type B1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.260e-27
Identity = 77/207 (37.20%), Postives = 116/207 (56.04%), Query Frame = 2
Query:  143 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 754
            +DK   E+ERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +       E+V+ EV   L + G+  +  P V  S  E   ++E   N +  K    L++A+D+ I  P+R +D+P  +P++DV+ I G GTV  GRVE GVL  G
Sbjct:   50 IDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVQYIVVFLNKAD----QVDDPELIELVEMEVRELLNEYGFPGDDTPIVVGSALE---VLENQDNAEKTKCIDELMEAIDSYIPTPERATDQPFLMPVEDVFTITGRGTVATGRVERGVLHTG 242          
BLAST of EY659410 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBH (Elongation factor Tu OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.260e-27
Identity = 77/207 (37.20%), Postives = 116/207 (56.04%), Query Frame = 2
Query:  143 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 754
            +DK   E+ERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +       E+V+ EV   L + G+  +  P V  S  E   ++E   N +  K    L++A+D+ I  P+R +D+P  +P++DV+ I G GTV  GRVE GVL  G
Sbjct:   50 IDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVQYIVVFLNKAD----QVDDPELIELVEMEVRELLNEYGFPGDDTPIVVGSALE---VLENQDNAEKTKCIDELMEAIDSYIPTPERATDQPFLMPVEDVFTITGRGTVATGRVERGVLHTG 242          
BLAST of EY659410 vs. ExPASy Swiss-Prot
Match: EFTU_CLOB1 (Elongation factor Tu OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.260e-27
Identity = 77/207 (37.20%), Postives = 116/207 (56.04%), Query Frame = 2
Query:  143 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 754
            +DK   E+ERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +       E+V+ EV   L + G+  +  P V  S  E   ++E   N +  K    L++A+D+ I  P+R +D+P  +P++DV+ I G GTV  GRVE GVL  G
Sbjct:   50 IDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVQYIVVFLNKAD----QVDDPELIELVEMEVRELLNEYGFPGDDTPIVVGSALE---VLENQDNAEKTKCIDELMEAIDSYIPTPERATDQPFLMPVEDVFTITGRGTVATGRVERGVLHTG 242          
BLAST of EY659410 vs. ExPASy Swiss-Prot
Match: EFTU_BORBZ (Elongation factor Tu OS=Borrelia burgdorferi (strain ZS7) GN=tuf PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.260e-27
Identity = 77/223 (34.53%), Postives = 125/223 (56.05%), Query Frame = 2
Query:  104 AEMNK--RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVV 763
            +++NK  ++ KY  + D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D A+L++ + +G        + QT+EH LLA  +G+K++I   NK+D   P+      + +  EV   ++K G++ +  P +  S F   +  E   +    K   LL+++DN  + P+R  DKP  L ++DV+ I G GTV  GR+E G++K G  V
Sbjct:   37 SKLNKDAKALKYEDI-DNAPEEKARGITINARHIEYETANRHYAHVDCPGHADYIKNMITGAAQMDAAILLVAADSGA-------EPQTKEHLLLAQRMGIKKIIVFLNKLDLADPEL----VELVEVEVLELVEKYGFSAD-TPIIKGSAFGAMSNPEDPESTKCVK--ELLESMDNYFDLPERDIDKPFLLAVEDVFSISGRGTVATGRIERGIIKVGQEV 244          
BLAST of EY659410 vs. ExPASy Swiss-Prot
Match: EFTU_BORBU (Elongation factor Tu OS=Borrelia burgdorferi GN=tuf PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.260e-27
Identity = 77/223 (34.53%), Postives = 125/223 (56.05%), Query Frame = 2
Query:  104 AEMNK--RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVV 763
            +++NK  ++ KY  + D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D A+L++ + +G        + QT+EH LLA  +G+K++I   NK+D   P+      + +  EV   ++K G++ +  P +  S F   +  E   +    K   LL+++DN  + P+R  DKP  L ++DV+ I G GTV  GR+E G++K G  V
Sbjct:   37 SKLNKDAKALKYEDI-DNAPEEKARGITINARHIEYETANRHYAHVDCPGHADYIKNMITGAAQMDAAILLVAADSGA-------EPQTKEHLLLAQRMGIKKIIVFLNKLDLADPEL----VELVEVEVLELVEKYGFSAD-TPIIKGSAFGAMSNPEDPESTKCVK--ELLESMDNYFDLPERDIDKPFLLAVEDVFSISGRGTVATGRIERGIIKVGQEV 244          
BLAST of EY659410 vs. ExPASy Swiss-Prot
Match: EFTU_ACIC1 (Elongation factor Tu OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=tuf PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.260e-27
Identity = 91/254 (35.83%), Postives = 130/254 (51.18%), Query Frame = 2
Query:   20 VNATTTGHLIYKLGGIDKRVIERFEKEAAEMNKRS-FKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK----EVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 754
            VN  T GH+ +    +   + +    +  ++N  + F+    +DK   ER RGITI IA  +++T K +   +D PGH D+IKNMITG +Q D A+L++ +  G          QT+EH LLA  +GV  ++   NK D           +EI++    EV   L    +  + VP V +S     EGD    +S  LD      LL A D+ I EP R  DKP  +P++DV+ I G GTV  GRVE GV+K G
Sbjct:   13 VNIGTIGHIDHGKTTLTAAITKVLHDQNPDINPYTPFEQ---IDKAPEERARGITISIAHVEYQTEKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTKEHVLLARQVGVPYIVVALNKADVVDD-------EEILQLVELEVRELLNSYEFPGDDVPVVRVSALKALEGDPKWTQSI-LD------LLKACDDYIPEPVREIDKPFLMPIEDVFTITGRGTVVTGRVERGVVKVG 242          
BLAST of EY659410 vs. ExPASy Swiss-Prot
Match: EFTU2_RHORT (Elongation factor Tu 2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.260e-27
Identity = 81/249 (32.53%), Postives = 123/249 (49.40%), Query Frame = 2
Query:   23 NATTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGF----EGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 754
            N  T GH+ +    +   +     K  AE    +F+    +DK   ER RGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    +  + +P +  S      + D  +     L+      L+ A+D+ I +P+RP DKP  +P++DV+ I G GTV  GRVE G++K G
Sbjct:   14 NVGTIGHVDHGKTSLTAAIT----KVLAEAGGATFQAYDQIDKAPEERARGITISTAHVEYETEARHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPALVVFLNKCDMVD---DEELLELVELEVRELLTSYDFPGDDIPIIKGSALAALEDSDQKLGHDAILE------LMKAVDDYIPQPERPKDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVG 242          
BLAST of EY659410 vs. ExPASy Swiss-Prot
Match: EFTU1_STRRA (Elongation factor Tu-1 OS=Streptomyces ramocissimus GN=tuf1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.260e-27
Identity = 78/203 (38.42%), Postives = 112/203 (55.17%), Query Frame = 2
Query:  143 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 748
            +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D    +      +  V+E+ S  +  G +   V    +   EGD    +S  LD      L+ A+D +I EP+R  DKP  +P++DV+ I G GTV  GR+E GVLK
Sbjct:   52 IDKAPEERQRGITISIAHVEYQTEARHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQVGVPYIVVALNKADMVDDEEIMELVELEVRELLSEYEFPGDDLPVVRVSALKALEGDAQWTQSV-LD------LMKAVDESIPEPERDVDKPFLMPIEDVFTITGRGTVVTGRIERGVLK 240          
BLAST of EY659410 vs. ExPASy Swiss-Prot
Match: CYSNC_MYCTU (Bifunctional enzyme cysN/cysC OS=Mycobacterium tuberculosis GN=cysNC PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.260e-27
Identity = 83/289 (28.72%), Postives = 140/289 (48.44%), Query Frame = 2
Query:   26 ATTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVP----VGRVETGVLKPGMVVTFGPSG*QLRXSLVRCTRSSAGGPSGDMXASREERAVKI 880
            +T  G L+Y    + +      E+ + +        A V D L+AERE+GITID+A   F T K    + D PGH  + +NM+TG S A   ++++D+  G  E       Q+R HA LA  LG++ ++   NKMD     + + ++D I  E  ++  ++  + + V  +PIS   GDN++ +S    WY+GP+LL  L+++      +   +R P+Q V +   +         G V +GV++ G  V   P G   R + +        GP+G +  +    AV +
Sbjct:   18 STLIGRLLYDSKAVMEDQWASVEQTSKDRGHDYTDLALVTDGLRAEREQGITIDVAYRYFATPKRKFIIADTPGHIQYTRNMVTGASTAQLVIVLVDARHGLLE-------QSRRHAFLASLLGIRHLVLAVNKMDLL--GWDQEKFDAIRDEFHAFAARL--DVQDVTSIPISALHGDNVVTKSDQTPWYEGPSLLSHLEDVYIAGDRNMVDVRFPVQYVIRPHTLEHQDHRSYAGTVASGVMRSGDEVVVLPIGKTTRITAI-------DGPNGPVAEAFPPMAVSV 288          
BLAST of EY659410 vs. ExPASy Swiss-Prot
Match: EFTU_PELPD (Elongation factor Tu OS=Pelobacter propionicus (strain DSM 2379) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.482e-27
Identity = 82/246 (33.33%), Postives = 123/246 (50.00%), Query Frame = 2
Query:   20 VNATTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 754
            VN  T GH+ +    +   +     K  A   +  FK    +D    ERERGITI  A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  E+   L    +  + +P V  S  +   +    + L       L+DA+D+ I +P+R  DKP  +P++DV+ I G GTV  GRVE G++K G
Sbjct:   13 VNIGTIGHVDHGKTTLTAAIT----KVLAGKGQAEFKAFDQIDNAPEERERGITIATAHVEYETDKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVYLNKADMVD---DEELLELVELEIRELLSSYDFPGDDIPIVKGSALKA--LEGEKSELGEDSIIKLMDAVDSYIPDPERAVDKPFLMPVEDVFSISGRGTVATGRVERGIVKVG 242          
The following BLAST results are available for this feature:
BLAST of EY659410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_CLOBK7.260e-2737.20Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CLOBH7.260e-2737.20Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CLOB17.260e-2737.20Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_BORBZ7.260e-2734.53Elongation factor Tu OS=Borrelia burgdorferi (stra... [more]
EFTU_BORBU7.260e-2734.53Elongation factor Tu OS=Borrelia burgdorferi GN=tu... [more]
EFTU_ACIC17.260e-2735.83Elongation factor Tu OS=Acidothermus cellulolyticu... [more]
EFTU2_RHORT7.260e-2732.53Elongation factor Tu 2 OS=Rhodospirillum rubrum (s... [more]
EFTU1_STRRA7.260e-2738.42Elongation factor Tu-1 OS=Streptomyces ramocissimu... [more]
CYSNC_MYCTU7.260e-2728.72Bifunctional enzyme cysN/cysC OS=Mycobacterium tub... [more]
EFTU_PELPD9.482e-2733.33Elongation factor Tu OS=Pelobacter propionicus (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-G12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659410 ID=EY659410; Name=EY659410; organism=Citrus sinensis; type=EST; length=888bp
CCACGCGTCCGCGACTCTGGTAAACGCAACCACCACCGGACACTTGATCT
ACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGAAGGAA
GCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCCTGGGTGCTCGACAA
GCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTGTGGA
AGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGCTCCTGGACAT
CGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGTGC
CGTCCTTATCATTGACTCCACCACCGGTGGTTTTGAAGCTGGTATCTCCA
AGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTG
AAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCACCACCCCCAAGTA
CTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCTCTTCCTACCTGA
AGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGT
TTCGAGGGTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAA
GGGTCCAACCCTGCTGGATGCTCTTGACAATATCAATGAGCCGAAGAGGC
CCTCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGT
GGCATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAAGCC
TGGTATGGTGGTGACATTTGGCCCCTCTGGATGACAACTGAGGNTAAGTC
TNGTGAGATGCACACGAAGCTCTGCAGGAGGCCCTTCGGGTGACATGNTG
GCTTCACGTGAAGAACGTGCTGTCAAGATCTCAGCGTG
back to top