EY659410

Overview
NameEY659410
Unique NameEY659410
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:136..1023. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659410 vs. ExPASy Swiss-Prot
Match: EFTU_MYCBP (Elongation factor Tu OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.238e-26
Identity = 86/246 (34.96%), Postives = 129/246 (52.44%), Query Frame = 2
Query:   20 VNATTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 745
            VN  T GH+ +    +   + +    +  ++N+   K    +D    ER+RGITI+IA  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA      +   + +  EV   L    ++ E  P V +S     EGD     S          L++A+D +I +P R +DKP  +P++DV+ I G GTV  GRVE GV+
Sbjct:   13 VNIGTIGHVDHGKTTLTAAITKVLHDKFPDLNET--KAFDQIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADAVD---DEELLELVEMEVRELLAAQEFD-EDAPVVRVSALKALEGDAKWVASVE-------ELMNAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVI 238          
BLAST of EY659410 vs. ExPASy Swiss-Prot
Match: EFTU_MYCBO (Elongation factor Tu OS=Mycobacterium bovis GN=tuf PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.238e-26
Identity = 86/246 (34.96%), Postives = 129/246 (52.44%), Query Frame = 2
Query:   20 VNATTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 745
            VN  T GH+ +    +   + +    +  ++N+   K    +D    ER+RGITI+IA  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA      +   + +  EV   L    ++ E  P V +S     EGD     S          L++A+D +I +P R +DKP  +P++DV+ I G GTV  GRVE GV+
Sbjct:   13 VNIGTIGHVDHGKTTLTAAITKVLHDKFPDLNET--KAFDQIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADAVD---DEELLELVEMEVRELLAAQEFD-EDAPVVRVSALKALEGDAKWVASVE-------ELMNAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVI 238          
BLAST of EY659410 vs. ExPASy Swiss-Prot
Match: EFTU_LEPBL (Elongation factor Tu OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.238e-26
Identity = 81/247 (32.79%), Postives = 120/247 (48.58%), Query Frame = 2
Query:   20 VNATTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 748
            +N  T GH+ +    +   +     K     NK +  Y  + D    E+ RGITI  +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  +I   NK D           + +  +V   L K  +  +  P V    +   EGD      + +       L++ALD  +  PKR +DKP  +P++DV+ I G GTV  GRVE GVLK
Sbjct:   13 LNVGTIGHVDHGKTTLTAAITTTLAKAIGGKNK-AVAYDQI-DNAPEEKARGITIATSHQEYETNNRHYAHVDCPGHADYVKNMITGAAQMDAAILVVSATDGPMP-------QTKEHILLARQVGVPYVIVFINKADMLAADERAEMIEMVEMDVRDLLNKYNFPGDTTPIVYGSAVKALEGD-----ESEIGAPAILKLMEALDTFVPNPKRVTDKPFLMPVEDVFSITGRGTVATGRVEQGVLK 245          
BLAST of EY659410 vs. ExPASy Swiss-Prot
Match: EFTU_LEPBJ (Elongation factor Tu OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.238e-26
Identity = 81/247 (32.79%), Postives = 120/247 (48.58%), Query Frame = 2
Query:   20 VNATTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 748
            +N  T GH+ +    +   +     K     NK +  Y  + D    E+ RGITI  +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  +I   NK D           + +  +V   L K  +  +  P V    +   EGD      + +       L++ALD  +  PKR +DKP  +P++DV+ I G GTV  GRVE GVLK
Sbjct:   13 LNVGTIGHVDHGKTTLTAAITTTLAKAIGGKNK-AVAYDQI-DNAPEEKARGITIATSHQEYETNNRHYAHVDCPGHADYVKNMITGAAQMDAAILVVSATDGPMP-------QTKEHILLARQVGVPYVIVFINKADMLAADERAEMIEMVEMDVRDLLNKYNFPGDTTPIVYGSAVKALEGD-----ESEIGAPAILKLMEALDTFVPNPKRVTDKPFLMPVEDVFSITGRGTVATGRVEQGVLK 245          
BLAST of EY659410 vs. ExPASy Swiss-Prot
Match: EFTU_GLUDA (Elongation factor Tu OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.238e-26
Identity = 82/249 (32.93%), Postives = 123/249 (49.40%), Query Frame = 2
Query:   23 NATTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGF----EGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 754
            N  T GH+ +    +   +     K  A+    +FK    +D    ER RGITI  A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D           + +  EV   L    +  + +P +  S      +GD  +  +   D      L+DA+D  I +P+RP D+P  +P++DV+ I G GTV  GRVE GV+  G
Sbjct:   14 NIGTIGHVDHGKTSLTAAIT----KTLAKTGGATFKAYDQIDAAPEERARGITISTAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPALVVFLNKVDQVD---DPELLELVEMEVRELLSAYQFPGDDIPIIKGSALVTLEDGDPEVGENRVRD------LMDAVDAYIPQPERPVDRPFLMPIEDVFSISGRGTVVTGRVERGVVNVG 242          
BLAST of EY659410 vs. ExPASy Swiss-Prot
Match: EFTU_GEOUR (Elongation factor Tu OS=Geobacter uraniireducens (strain Rf4) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.238e-26
Identity = 83/249 (33.33%), Postives = 123/249 (49.40%), Query Frame = 2
Query:   20 VNATTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 754
            VN  T GH+ +    +   +     K  A   +  FK    +D    ERERGITI  A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  E+   L    +  + +P +    +   EGD     +  L       L++A+D+ I EP R  DKP  +P++DV+ I G GTV  GRVE G++K G
Sbjct:   13 VNIGTIGHVDHGKTTLTAAIT----KVLAGKGQAEFKAFDQIDNAPEERERGITIATAHVEYETDKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKADMVD---DEELLELVELEIRELLSSYDFPGDDIPIIKGSALKALEGD-----TGELGEQAIMKLMEAVDSYIPEPVRAIDKPFLMPVEDVFSISGRGTVATGRVERGIVKVG 242          
BLAST of EY659410 vs. ExPASy Swiss-Prot
Match: EFTU_COREF (Elongation factor Tu OS=Corynebacterium efficiens GN=tuf PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.238e-26
Identity = 87/250 (34.80%), Postives = 127/250 (50.80%), Query Frame = 2
Query:   20 VNATTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGD-----NMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 745
            VN  T GH+ +        + +       E+N+ +F +   +DK   E+ERGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L +  Y+ E  P V IS     EGD      ++E     D           DNI +P R +DKP  +P++D++ I G GTV  GRVE G L
Sbjct:   13 VNIGTIGHVDHGKTTTTAAITKVLADAYPELNE-AFAFD-AIDKAPEEKERGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKCDMVD---DEEIIELVEMEVRELLAEQDYD-EDAPIVHISALKALEGDEKWAGQILELMQACD-----------DNIPDPVRETDKPFLMPIEDIFTITGRGTVVTGRVERGTL 238          
BLAST of EY659410 vs. ExPASy Swiss-Prot
Match: EFTU_BRASO (Elongation factor Tu OS=Bradyrhizobium sp. (strain ORS278) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.238e-26
Identity = 80/248 (32.26%), Postives = 121/248 (48.79%), Query Frame = 2
Query:   23 NATTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINE----PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 754
            N  T GH+ +    +   +     K  AE    +F     +DK   E+ RGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D           + +  EV   L K  +  +K+P +  S        ++    D      +L+ + N++E    P+RP D+P  +P++DV+ I G GTV  GRVE GV+K G
Sbjct:   14 NIGTIGHVDHGKTSLTAAIT----KILAETGGATFTAYDQIDKAPEEKARGITISTAHVEYETQNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPALVVFLNKCDMVD---DPELLELVELEVRELLSKYEFPGDKIPIIKGSALAALEDSDKKLGHD-----AILELMRNVDEYIPQPERPIDQPFLMPVEDVFSISGRGTVVTGRVERGVIKVG 242          
BLAST of EY659410 vs. ExPASy Swiss-Prot
Match: EFTU_BRASB (Elongation factor Tu OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.238e-26
Identity = 80/248 (32.26%), Postives = 121/248 (48.79%), Query Frame = 2
Query:   23 NATTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINE----PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 754
            N  T GH+ +    +   +     K  AE    +F     +DK   E+ RGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D           + +  EV   L K  +  +K+P +  S        ++    D      +L+ + N++E    P+RP D+P  +P++DV+ I G GTV  GRVE GV+K G
Sbjct:   14 NIGTIGHVDHGKTSLTAAIT----KILAETGGATFTAYDQIDKAPEEKARGITISTAHVEYETQNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPALVVFLNKCDMVD---DPELLELVELEVRELLSKYEFPGDKIPIIKGSALAALEDSDKKLGHD-----AILELMRNVDEYIPQPERPIDQPFLMPVEDVFSISGRGTVVTGRVERGVIKVG 242          
BLAST of EY659410 vs. ExPASy Swiss-Prot
Match: EFTU_THIDA (Elongation factor Tu OS=Thiobacillus denitrificans (strain ATCC 25259) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.617e-26
Identity = 91/256 (35.55%), Postives = 123/256 (48.05%), Query Frame = 2
Query:    2 HASATLVNATTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 754
            H   TL  A TT  L  K GG  K+  E                   +D    E+ RGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ S  G          QTREH LLA  +GV  +I   NK D        A   E+V+ EV   L K  +  +  P +    +   EGD      +++       L +ALD  I EP+R  DKP  +P++DV+ I G GTV  GRVE GV+K G
Sbjct:   23 HGKTTLTAAITT-ILSKKFGGAAKKYDE-------------------IDSSPEEKARGITINTAHVEYETASRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSSADGPMP-------QTREHILLARQVGVPYIIVYMNKADMV----DDAELLELVEMEVRELLSKYDFPGDDTPIIVGSALKALEGD-----QSDIGEPSIIKLAEALDTYIPEPERAIDKPFLMPVEDVFSISGRGTVVTGRVERGVIKVG 242          
The following BLAST results are available for this feature:
BLAST of EY659410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_MYCBP1.238e-2634.96Elongation factor Tu OS=Mycobacterium bovis (strai... [more]
EFTU_MYCBO1.238e-2634.96Elongation factor Tu OS=Mycobacterium bovis GN=tuf... [more]
EFTU_LEPBL1.238e-2632.79Elongation factor Tu OS=Leptospira borgpetersenii ... [more]
EFTU_LEPBJ1.238e-2632.79Elongation factor Tu OS=Leptospira borgpetersenii ... [more]
EFTU_GLUDA1.238e-2632.93Elongation factor Tu OS=Gluconacetobacter diazotro... [more]
EFTU_GEOUR1.238e-2633.33Elongation factor Tu OS=Geobacter uraniireducens (... [more]
EFTU_COREF1.238e-2634.80Elongation factor Tu OS=Corynebacterium efficiens ... [more]
EFTU_BRASO1.238e-2632.26Elongation factor Tu OS=Bradyrhizobium sp. (strain... [more]
EFTU_BRASB1.238e-2632.26Elongation factor Tu OS=Bradyrhizobium sp. (strain... [more]
EFTU_THIDA1.617e-2635.55Elongation factor Tu OS=Thiobacillus denitrificans... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-G12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659410 ID=EY659410; Name=EY659410; organism=Citrus sinensis; type=EST; length=888bp
CCACGCGTCCGCGACTCTGGTAAACGCAACCACCACCGGACACTTGATCT
ACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGAAGGAA
GCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCCTGGGTGCTCGACAA
GCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTGTGGA
AGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGCTCCTGGACAT
CGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGTGC
CGTCCTTATCATTGACTCCACCACCGGTGGTTTTGAAGCTGGTATCTCCA
AGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTG
AAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCACCACCCCCAAGTA
CTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCTCTTCCTACCTGA
AGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGT
TTCGAGGGTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAA
GGGTCCAACCCTGCTGGATGCTCTTGACAATATCAATGAGCCGAAGAGGC
CCTCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGT
GGCATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAAGCC
TGGTATGGTGGTGACATTTGGCCCCTCTGGATGACAACTGAGGNTAAGTC
TNGTGAGATGCACACGAAGCTCTGCAGGAGGCCCTTCGGGTGACATGNTG
GCTTCACGTGAAGAACGTGCTGTCAAGATCTCAGCGTG
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