EY659394

Overview
NameEY659394
Unique NameEY659394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12605 contig Csv1_Contig12605:810..1352. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_NITEC (Malate dehydrogenase OS=Nitrosomonas eutropha (strain C91) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.517e-23
Identity = 50/104 (48.08%), Postives = 66/104 (63.46%), Query Frame = 1
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 318
            +   FI TVQ+RGA +I+AR             DH+R+W  GT +G W +MG+ SDGSY +P G+IY FPV C+NG   IVQGL I+ FSR +LD    EL++E
Sbjct:  215 IENYFIPTVQKRGAVVIEARGLSSAASAANAIIDHLRNWFFGTADGDWTTMGILSDGSYEIPEGVIYGFPVICKNGMREIVQGLEINPFSRTRLDAAYNELTQE 318          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_JANMA (Malate dehydrogenase OS=Janthinobacterium sp. (strain Marseille) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.517e-23
Identity = 54/101 (53.47%), Postives = 69/101 (68.32%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            F+ TV +RGAAII AR             DH+RDWVLGT  G WV+MG+ SDGSY +P   I+ FPVT  NGE+ IVQGL ID FS+++++LT +EL EE+
Sbjct:  222 FLPTVGKRGAAIIDARGVSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPKDTIFGFPVTVENGEYKIVQGLEIDAFSQERINLTLKELLEER 321          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_PSYWF (Malate dehydrogenase OS=Psychrobacter sp. (strain PRwf-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.981e-23
Identity = 53/102 (51.96%), Postives = 68/102 (66.67%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGL-SIDEFSRKKLDLTAEELSEEK 321
            +I +VQ+RGAAII+AR              H+R W LGT E  WVSMGVYS G Y +  GLIYSFP TC NG+W IV+GL +  +FS++K+  T +ELSEE+
Sbjct:  218 YIPSVQKRGAAIIEARGASSAASAANAAIAHMRTWALGTDENDWVSMGVYSQGEYGIAKGLIYSFPCTCSNGDWKIVEGLDTSSDFSQEKMKATEQELSEER 319          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_KOCRD (Malate dehydrogenase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=mdh PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.378e-23
Identity = 54/106 (50.94%), Postives = 66/106 (62.26%), Query Frame = 1
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            V+  FI TV +RGAAI++AR             DH RD +LG   G W SM V SDGSY VP GL+ SFPVT   G+W+IVQGL I EFSR ++D +  EL  E+A
Sbjct:  215 VQDTFIPTVAKRGAAILEARGASSAASAANATIDHARDLMLGNHRGDWTSMSVVSDGSYGVPEGLVSSFPVTTSGGDWSIVQGLDISEFSRARIDASVAELESERA 320          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_STRMK (Malate dehydrogenase OS=Stenotrophomonas maltophilia (strain K279a) GN=mdh PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.412e-23
Identity = 54/102 (52.94%), Postives = 70/102 (68.63%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MGV SDGSY +P G+I+ F VT  NG++T+V+ L ID+FS+K +D T  EL EE+A
Sbjct:  221 FIPTVGKRGAAIIEARGSSSAASAANAAIDHVRDWVLGS-NGKWVTMGVPSDGSYGIPEGVIFGFAVTTENGKYTLVKDLPIDDFSQKYIDKTLAELEEERA 321          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_XYLFT (Malate dehydrogenase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=mdh PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.526e-23
Identity = 53/102 (51.96%), Postives = 69/102 (67.65%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            FI TV +RGAAII+AR             DH+RDW+LG+  G W++MGV SDGSY +P G+I+ FPVT  NGE++IV+ L ID FS+  +D T  EL EE+A
Sbjct:  221 FIPTVSKRGAAIIEARGLSSAASAANAAIDHMRDWLLGS-NGKWITMGVPSDGSYGIPEGMIFGFPVTTTNGEYSIVKDLPIDTFSKTYIDKTLAELEEERA 321          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_XYLFM (Malate dehydrogenase OS=Xylella fastidiosa (strain M12) GN=mdh PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.526e-23
Identity = 53/102 (51.96%), Postives = 69/102 (67.65%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            FI TV +RGAAII+AR             DH+RDW+LG+  G W++MGV SDGSY +P G+I+ FPVT  NGE++IV+ L ID FS+  +D T  EL EE+A
Sbjct:  221 FIPTVSKRGAAIIEARGLSSAASAANAAIDHMRDWLLGS-NGKWITMGVPSDGSYGIPEGMIFGFPVTTTNGEYSIVKDLPIDTFSKTYIDKTLAELEEERA 321          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_XYLF2 (Malate dehydrogenase OS=Xylella fastidiosa (strain M23) GN=mdh PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.526e-23
Identity = 53/102 (51.96%), Postives = 69/102 (67.65%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            FI TV +RGAAII+AR             DH+RDW+LG+  G W++MGV SDGSY +P G+I+ FPVT  NGE++IV+ L ID FS+  +D T  EL EE+A
Sbjct:  221 FIPTVSKRGAAIIEARGLSSAASAANAAIDHMRDWLLGS-NGKWITMGVPSDGSYGIPEGMIFGFPVTTTNGEYSIVKDLPIDTFSKTYIDKTLAELEEERA 321          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_METCA (Malate dehydrogenase OS=Methylococcus capsulatus GN=mdh PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.526e-23
Identity = 54/102 (52.94%), Postives = 66/102 (64.71%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            FI TVQQRGA++I  R             DH+R W LGTP+  WVSM V SDGSY +  GL++SFPVT  NG + IVQ L +D FSR++L LT  EL EE+A
Sbjct:  218 FIPTVQQRGASVIAIRGKSSAASAANAALDHMRSWFLGTPKDDWVSMTVSSDGSYGIAEGLMFSFPVTIENGRFRIVQDLPLDTFSRERLRLTEVELLEERA 319          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_SYNFM (Malate dehydrogenase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=mdh PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.830e-23
Identity = 53/105 (50.48%), Postives = 69/105 (65.71%), Query Frame = 1
Query:   10 RGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            R E+I  V +RGAAII+AR             DH+ DW LGT  G WV+MG+ SDGSY +P G +Y  PVTC  G++  V+GL ID FSR+K+D T +EL+EE+A
Sbjct:  219 RNEYIPKVGKRGAAIIEARGLSSAASAANAAIDHMHDWALGT-NGKWVTMGLPSDGSYGIPEGTMYGVPVTCTPGKYERVKGLEIDAFSREKMDFTLKELTEEQA 322          
The following BLAST results are available for this feature:
BLAST of EY659394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
MDH_NITEC1.517e-2348.08Malate dehydrogenase OS=Nitrosomonas eutropha (str... [more]
MDH_JANMA1.517e-2353.47Malate dehydrogenase OS=Janthinobacterium sp. (str... [more]
MDH_PSYWF1.981e-2351.96Malate dehydrogenase OS=Psychrobacter sp. (strain ... [more]
MDH_KOCRD3.378e-2350.94Malate dehydrogenase OS=Kocuria rhizophila (strain... [more]
MDH_STRMK4.412e-2352.94Malate dehydrogenase OS=Stenotrophomonas maltophil... [more]
MDH_XYLFT7.526e-2351.96Malate dehydrogenase OS=Xylella fastidiosa (strain... [more]
MDH_XYLFM7.526e-2351.96Malate dehydrogenase OS=Xylella fastidiosa (strain... [more]
MDH_XYLF27.526e-2351.96Malate dehydrogenase OS=Xylella fastidiosa (strain... [more]
MDH_METCA7.526e-2352.94Malate dehydrogenase OS=Methylococcus capsulatus G... [more]
MDH_SYNFM9.830e-2350.48Malate dehydrogenase OS=Syntrophobacter fumaroxida... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-F08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659394 ID=EY659394; Name=EY659394; organism=Citrus sinensis; type=EST; length=543bp
CCACGCGTCCGTGGAGAATTCATAACCACAGTCCAACAACGTGGTGCTGC
AATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTGCTAGCTCTG
CTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAGGGCACCTGG
GTCTCCATGGGGGTATACTCTGATGGTTCATACAATGTACCAGCTGGGCT
CATTTACTCATTCCCAGTAACCTGCCGCAACGGTGAATGGACAATTGTTC
AAGGACTCAGCATTGATGAATTCTCAAGGAAGAAGTTGGACTTGACAGCA
GAGGAGCTCTCCGAGGAGAAGGCCCTCGCATACTCATGTCTCTCTTAAAT
GCTTTCTTCCCTTCAATAGTGTGTTACCAAGGCCCTTAGCTTTGTCTGAG
TAGTTGGTATAGTTACAGTTTCGAATAAAACCATTGTTGAAACCTGGAGG
AACCATTGATGATGGAGAAGGCTTTCCATCTTATGTTGCTATTTCTGCAT
TTGAATATCGGGATTTTGGAGTTTTGTCTTCCCCGGGGAATAA
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