EY659394

Overview
NameEY659394
Unique NameEY659394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_NITMU (Malate dehydrogenase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=mdh PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.830e-23
Identity = 50/101 (49.50%), Postives = 64/101 (63.37%), Query Frame = 1 
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            FI  +Q+RG  +I+AR              H+RDWV GTPEG WVSMG+ SDGSY +P G+IY +PVTC+ GE+ IV  L I EFSR K+  +  EL  E+
Sbjct:  219 FIPVIQKRGMEVIEARGSSSAASAANAAICHMRDWVSGTPEGDWVSMGIPSDGSYGIPEGVIYGYPVTCQGGEYKIVPDLEISEFSRMKMQASYRELMGER 319
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_STRM5 (Malate dehydrogenase OS=Stenotrophomonas maltophilia (strain R551-3) GN=mdh PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.284e-22
Identity = 52/102 (50.98%), Postives = 70/102 (68.63%), Query Frame = 1 
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MGV SDGSY +P G+I+ F VT  NG++T+V+ L +D+FS+K +D T  EL EE++
Sbjct:  221 FIPTVGKRGAAIIEARGSSSAASAANAAIDHVRDWVLGS-NGKWVTMGVPSDGSYGIPEGVIFGFAVTTENGKYTLVKDLPVDDFSQKYIDKTLAELEEERS 321
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_POLNA (Malate dehydrogenase OS=Polaromonas naphthalenivorans (strain CJ2) GN=mdh PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.677e-22
Identity = 51/102 (50.00%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            F+ TV +RGAAII+AR             DH+RDW LGT  G WV+MG+ S G Y +PA  ++ FPVTC NGE+ IV+GL ID FS++++++T  EL  EKA
Sbjct:  222 FLPTVGKRGAAIIEARGSSSAASAANAAIDHMRDWALGT-NGKWVTMGIPSGGEYGIPAETMFGFPVTCENGEYKIVEGLEIDAFSQERINITLAELEGEKA 322
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_XYLFA (Malate dehydrogenase OS=Xylella fastidiosa GN=mdh PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.190e-22
Identity = 52/102 (50.98%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            FI TV +RGAAII+ R             DH+RDW+LG+  G W++MGV SDGSY +P G+I+ FPVT  NGE++IV+ L ID FS+  +D T  EL EE+A
Sbjct:  221 FIPTVSKRGAAIIEVRGLSSAASAANAAIDHMRDWLLGS-NGKWITMGVPSDGSYGIPEGMIFGFPVTTTNGEYSIVKDLPIDTFSKTYIDKTLAELEEERA 321
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_XANOR (Malate dehydrogenase OS=Xanthomonas oryzae pv. oryzae GN=mdh PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.190e-22
Identity = 52/102 (50.98%), Postives = 70/102 (68.63%), Query Frame = 1 
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MGV SDGSY +  G+I+ FPVT  NG++++V+ L ID+FS+K +D T  EL EE++
Sbjct:  221 FIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGVPSDGSYGISEGVIFGFPVTTENGQYSLVKDLPIDDFSQKYIDKTLAELEEERS 321
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_XANOP (Malate dehydrogenase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=mdh PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.190e-22
Identity = 52/102 (50.98%), Postives = 70/102 (68.63%), Query Frame = 1 
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MGV SDGSY +  G+I+ FPVT  NG++++V+ L ID+FS+K +D T  EL EE++
Sbjct:  221 FIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGVPSDGSYGISEGVIFGFPVTTENGQYSLVKDLPIDDFSQKYIDKTLAELEEERS 321
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_XANOM (Malate dehydrogenase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=mdh PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.190e-22
Identity = 52/102 (50.98%), Postives = 70/102 (68.63%), Query Frame = 1 
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MGV SDGSY +  G+I+ FPVT  NG++++V+ L ID+FS+K +D T  EL EE++
Sbjct:  221 FIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGVPSDGSYGISEGVIFGFPVTTENGQYSLVKDLPIDDFSQKYIDKTLAELEEERS 321
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_VARPS (Malate dehydrogenase OS=Variovorax paradoxus (strain S110) GN=mdh PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.190e-22
Identity = 50/102 (49.02%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            F+ TV +RGAAII+AR             DH+RDW LGT  G WV+MG+ SDG Y +P   ++ FPVTC NGE+ +V+GL ID FS+++++ T EEL  E+A
Sbjct:  222 FLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGIPSDGQYGIPKDTMFGFPVTCENGEYKLVEGLEIDAFSQERINKTLEELQGEQA 322
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_POLSJ (Malate dehydrogenase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=mdh PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.190e-22
Identity = 50/102 (49.02%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            F+ TV +RGAAII+AR             DH+RDW LGT  G WV+MG+ SDG Y +P   ++ FPVTC NGE+ +V+GL ID FS+++++ T EEL  E+A
Sbjct:  222 FLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGIPSDGQYGIPKDTMFGFPVTCENGEYKLVEGLEIDAFSQERINKTLEELQGEQA 322
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_FRAAA (Malate dehydrogenase OS=Frankia alni (strain ACN14a) GN=mdh PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.190e-22
Identity = 52/102 (50.98%), Postives = 64/102 (62.75%), Query Frame = 1 
Query:   16 EFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            EFI  V +RGA II+ R             DH+  WV GTPEG W S  + SDGSY VP GLI SFPVT   G++ IVQGL +D FSR+K+D +  EL+EE+
Sbjct:  219 EFIPRVAKRGAEIIEVRGASSAASAASAAIDHVYTWVNGTPEGDWTSAAIPSDGSYGVPEGLISSFPVTAAGGKFEIVQGLELDAFSREKIDASVRELAEER 320
The following BLAST results are available for this feature:
BLAST of EY659394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
MDH_NITMU9.830e-2349.50Malate dehydrogenase OS=Nitrosospira multiformis (... [more]
MDH_STRM51.284e-2250.98Malate dehydrogenase OS=Stenotrophomonas maltophil... [more]
MDH_POLNA1.677e-2250.00Malate dehydrogenase OS=Polaromonas naphthalenivor... [more]
MDH_XYLFA2.190e-2250.98Malate dehydrogenase OS=Xylella fastidiosa GN=mdh ... [more]
MDH_XANOR2.190e-2250.98Malate dehydrogenase OS=Xanthomonas oryzae pv. ory... [more]
MDH_XANOP2.190e-2250.98Malate dehydrogenase OS=Xanthomonas oryzae pv. ory... [more]
MDH_XANOM2.190e-2250.98Malate dehydrogenase OS=Xanthomonas oryzae pv. ory... [more]
MDH_VARPS2.190e-2249.02Malate dehydrogenase OS=Variovorax paradoxus (stra... [more]
MDH_POLSJ2.190e-2249.02Malate dehydrogenase OS=Polaromonas sp. (strain JS... [more]
MDH_FRAAA2.190e-2250.98Malate dehydrogenase OS=Frankia alni (strain ACN14... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-F08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659394 ID=EY659394; Name=EY659394; organism=Citrus sinensis; type=EST; length=543bp
CCACGCGTCCGTGGAGAATTCATAACCACAGTCCAACAACGTGGTGCTGC
AATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTGCTAGCTCTG
CTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAGGGCACCTGG
GTCTCCATGGGGGTATACTCTGATGGTTCATACAATGTACCAGCTGGGCT
CATTTACTCATTCCCAGTAACCTGCCGCAACGGTGAATGGACAATTGTTC
AAGGACTCAGCATTGATGAATTCTCAAGGAAGAAGTTGGACTTGACAGCA
GAGGAGCTCTCCGAGGAGAAGGCCCTCGCATACTCATGTCTCTCTTAAAT
GCTTTCTTCCCTTCAATAGTGTGTTACCAAGGCCCTTAGCTTTGTCTGAG
TAGTTGGTATAGTTACAGTTTCGAATAAAACCATTGTTGAAACCTGGAGG
AACCATTGATGATGGAGAAGGCTTTCCATCTTATGTTGCTATTTCTGCAT
TTGAATATCGGGATTTTGGAGTTTTGTCTTCCCCGGGGAATAA
back to top