EY659394

Overview
NameEY659394
Unique NameEY659394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_RHOSR (Malate dehydrogenase OS=Rhodococcus sp. (strain RHA1) GN=mdh PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.860e-22
Identity = 50/103 (48.54%), Postives = 64/103 (62.14%), Query Frame = 1
Query:   13 GEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            G+FI TV  RG+AII+AR             DH+ DWVLGTP+  W S+ + S G+Y VP GL+ SFPV   +G W IV GL ID+FSRK +D +  EL  E+
Sbjct:  220 GDFIPTVANRGSAIIEARGASSAASAANAAIDHVHDWVLGTPDDDWTSVALPSTGAYGVPEGLVSSFPVRSVDGSWQIVDGLEIDDFSRKLIDASVGELESER 322          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_CORJK (Malate dehydrogenase OS=Corynebacterium jeikeium (strain K411) GN=mdh PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.879e-22
Identity = 51/106 (48.11%), Postives = 65/106 (61.32%), Query Frame = 1
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            V  EFI  V +RGA II+ R             DH+RDWV GT EG WVS+ + SDGSY +P GL++SFP    +GEW IVQGL I    ++++D   +EL EEKA
Sbjct:  217 VNDEFIPRVAKRGAEIIEVRGRSSAASAASAALDHMRDWVNGTAEGDWVSVALPSDGSYGIPEGLVFSFPCRSVDGEWEIVQGLEISPAQQERIDANIKELQEEKA 322          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_AZOSE (Malate dehydrogenase OS=Azoarcus sp. (strain EbN1) GN=mdh PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.879e-22
Identity = 49/102 (48.04%), Postives = 69/102 (67.65%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            F+ TV +RGAAII AR             DH+ DW LG+ +  WV+MGV SDGSY +PAG+++  P  C+NG++ I+QGL IDE+SR+K++ T  EL +E+A
Sbjct:  223 FLPTVGKRGAAIIDARGLSSAASAANAAIDHMHDWALGSDD--WVTMGVPSDGSYGIPAGVVFGVPCECKNGDFKIIQGLEIDEYSREKINKTLGELEDERA 322          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_VEREI (Malate dehydrogenase OS=Verminephrobacter eiseniae (strain EF01-2) GN=mdh PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.087e-21
Identity = 47/101 (46.53%), Postives = 67/101 (66.34%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            F+ TV +RGAAII+AR             DH+RDW LG+  G WV+MG+ SDG Y +P  +++ FPVTC NGE+ +VQGL++D FS++++  T  EL  E+
Sbjct:  222 FLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGS-NGRWVTMGIASDGQYGIPKDIVFGFPVTCANGEYQLVQGLALDAFSQQRIQATLAELQAEQ 321          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_FRASC (Malate dehydrogenase OS=Frankia sp. (strain CcI3) GN=mdh PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.087e-21
Identity = 52/105 (49.52%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            +  EFI  V +RGA II+ R             DHI  WV GTP G W S  + SDGSY VP GLI SFPVT   G + IVQGL +D FSR+K+D +  EL+EE+
Sbjct:  216 IADEFIPRVAKRGAEIIEVRGASSAASAASAAIDHIFTWVNGTPAGDWTSAAIPSDGSYGVPEGLISSFPVTASGGRFEIVQGLELDAFSREKIDASVRELAEER 320          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_DIAST (Malate dehydrogenase OS=Diaphorobacter sp. (strain TPSY) GN=mdh PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.421e-21
Identity = 50/101 (49.50%), Postives = 68/101 (67.33%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            F+ TV +RGAAII AR             DH+RDW LG+ +G WV+MGV S+G Y +PAG+++ FPVT  NGE+ IV+GL+ID FS++ +D T  EL  E+
Sbjct:  222 FLPTVGKRGAAIIAARGLSSAASAANAAIDHMRDWALGS-KGEWVTMGVPSNGEYGIPAGIVFGFPVTTENGEYKIVEGLAIDAFSQECIDKTLAELQGEQ 321          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_RALEJ (Malate dehydrogenase OS=Ralstonia eutropha (strain JMP134) GN=mdh PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.162e-21
Identity = 49/102 (48.04%), Postives = 69/102 (67.65%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            F+ TV +RGAAII+AR             DH+ DWVLGT  G  V+MG+ S+G Y +PA  ++ +PVTC NG++ IV+GL ID +S++K+++T  EL EEKA
Sbjct:  220 FLPTVGKRGAAIIEARGLSSAASAANAAIDHVHDWVLGT-NGKVVTMGIPSNGEYGIPADTMFGYPVTCANGKYEIVKGLEIDAYSQEKINITLNELEEEKA 320          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_ACISJ (Malate dehydrogenase OS=Acidovorax sp. (strain JS42) GN=mdh PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 4.130e-21
Identity = 50/101 (49.50%), Postives = 67/101 (66.34%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            F+ TV +RGAAII AR             DH+RDW LG+ +G WV+MGV S+G Y +PAG+++ FPVT  NGE+ IV+GL ID FS++ +D T  EL  E+
Sbjct:  222 FLPTVGKRGAAIIAARGLSSAASAANAAIDHMRDWALGS-KGEWVTMGVPSNGEYGIPAGIVFGFPVTTENGEYKIVEGLPIDAFSQECIDKTLAELQGEQ 321          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_DELAS (Malate dehydrogenase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.045e-21
Identity = 50/101 (49.50%), Postives = 66/101 (65.35%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            F+ TV +RGAAII AR             DH+RDW LG+  G WV+MGV S+G Y +PAG+++ FPVT  NGE+ IV+GL ID FS++ +D T  EL  E+
Sbjct:  222 FLPTVGKRGAAIIAARGLSSAASAANAAIDHMRDWALGSG-GEWVTMGVPSNGEYGIPAGIVFGFPVTTENGEYKIVEGLEIDAFSQECIDKTLAELQGEQ 321          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_RALEH (Malate dehydrogenase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=mdh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20
Identity = 49/102 (48.04%), Postives = 69/102 (67.65%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            F+ TV +RGAAII+AR             DH+RDWVLGT  G  V+MG+ S+G Y +PA  ++ +PVT  NG++ IV+GL ID +S++K+++T  EL EEKA
Sbjct:  220 FLPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKVVTMGIPSNGEYGIPADTMFGYPVTTANGKYEIVKGLEIDAYSQEKINITLNELEEEKA 320          
The following BLAST results are available for this feature:
BLAST of EY659394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
MDH_RHOSR2.860e-2248.54Malate dehydrogenase OS=Rhodococcus sp. (strain RH... [more]
MDH_CORJK4.879e-2248.11Malate dehydrogenase OS=Corynebacterium jeikeium (... [more]
MDH_AZOSE4.879e-2248.04Malate dehydrogenase OS=Azoarcus sp. (strain EbN1)... [more]
MDH_VEREI1.087e-2146.53Malate dehydrogenase OS=Verminephrobacter eiseniae... [more]
MDH_FRASC1.087e-2149.52Malate dehydrogenase OS=Frankia sp. (strain CcI3) ... [more]
MDH_DIAST2.421e-2149.50Malate dehydrogenase OS=Diaphorobacter sp. (strain... [more]
MDH_RALEJ3.162e-2148.04Malate dehydrogenase OS=Ralstonia eutropha (strain... [more]
MDH_ACISJ4.130e-2149.50Malate dehydrogenase OS=Acidovorax sp. (strain JS4... [more]
MDH_DELAS7.045e-2149.50Malate dehydrogenase OS=Delftia acidovorans (strai... [more]
MDH_RALEH1.202e-2048.04Malate dehydrogenase OS=Ralstonia eutropha (strain... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-F08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659394 ID=EY659394; Name=EY659394; organism=Citrus sinensis; type=EST; length=543bp
CCACGCGTCCGTGGAGAATTCATAACCACAGTCCAACAACGTGGTGCTGC
AATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTGCTAGCTCTG
CTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAGGGCACCTGG
GTCTCCATGGGGGTATACTCTGATGGTTCATACAATGTACCAGCTGGGCT
CATTTACTCATTCCCAGTAACCTGCCGCAACGGTGAATGGACAATTGTTC
AAGGACTCAGCATTGATGAATTCTCAAGGAAGAAGTTGGACTTGACAGCA
GAGGAGCTCTCCGAGGAGAAGGCCCTCGCATACTCATGTCTCTCTTAAAT
GCTTTCTTCCCTTCAATAGTGTGTTACCAAGGCCCTTAGCTTTGTCTGAG
TAGTTGGTATAGTTACAGTTTCGAATAAAACCATTGTTGAAACCTGGAGG
AACCATTGATGATGGAGAAGGCTTTCCATCTTATGTTGCTATTTCTGCAT
TTGAATATCGGGATTTTGGAGTTTTGTCTTCCCCGGGGAATAA
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