EY659394

Overview
NameEY659394
Unique NameEY659394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_METPP (Malate dehydrogenase OS=Methylibium petroleiphilum (strain PM1) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.569e-20
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            F+ TV +RGAAII+AR             DH+RDW LGT  G WV+MGV S+G Y +P  +++ FPVTC NGE+ IV GL+ID FS++ ++ T  EL  E+
Sbjct:  222 FLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGT-NGAWVTMGVPSNGEYGIPKDVMFGFPVTCANGEYKIVDGLAIDAFSQECINKTLAELQGEQ 321          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH1_RHOFD (Malate dehydrogenase 1 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=mdh1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.050e-20
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            F+ TV +RGAAII AR             DH+RDW LGT  G WV+MG+ SDG Y +P   ++ FPVTC  GE+ +VQ L ID FS++ ++ T +EL +E+A
Sbjct:  222 FLPTVGKRGAAIIAARGVSSAASAANAAIDHMRDWALGT-NGKWVTMGIPSDGQYGIPKETMFGFPVTCEGGEYKVVQNLPIDAFSQECINKTLKELQDEQA 322          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_CUPTR (Malate dehydrogenase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.677e-20
Identity = 48/102 (47.06%), Postives = 70/102 (68.63%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            F+ TV +RGAAII+AR             DH+RDWVLG+  G  V+MG+ S+G Y +PA  ++ +PVT  NG++ IV+GL ID +S++K+++T +EL EEKA
Sbjct:  220 FLPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKVVTMGIPSNGEYGIPADTMFGYPVTTANGKYEIVKGLEIDAYSQEKINITLKELEEEKA 320          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_RALPJ (Malate dehydrogenase OS=Ralstonia pickettii (strain 12J) GN=mdh PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.566e-20
Identity = 48/102 (47.06%), Postives = 68/102 (66.67%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            F+ TV +RGAAII+AR             DH+RDWVLGT  G  V+MG+ S+G Y +P  +++ FPVT  NG++ IV+GL IDE+S+ K+ +T +EL  E+A
Sbjct:  222 FLPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKIVTMGIPSNGEYGIPKDVMFGFPVTTENGKYKIVEGLEIDEYSQGKIKITLDELEGERA 322          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_LEPCP (Malate dehydrogenase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=mdh PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.566e-20
Identity = 50/104 (48.08%), Postives = 64/104 (61.54%), Query Frame = 1
Query:   10 RGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            R  F+ TV +RGAAII AR             DH+RDW LGT  G WV+MGV S G Y +PA  ++ +PVTC  GE+ IV+GL ID FS++ ++ T  EL  EK
Sbjct:  219 RDVFLPTVGKRGAAIIAARGVSSAASAANAAIDHMRDWALGT-NGAWVTMGVPSKGEYGIPAETMFGYPVTCEGGEYKIVEGLPIDAFSQECINKTLAELEGEK 321          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_ACIAC (Malate dehydrogenase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.789e-20
Identity = 47/101 (46.53%), Postives = 65/101 (64.36%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            F+ TV +RGAAII+AR             DH+RDW LG+  G WV+MGV S G Y +P G+++ FPV   NGE+ IV+GL ID FS+++++ T  EL  E+
Sbjct:  222 FLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGS-NGKWVTMGVPSKGEYGIPEGIVFGFPVITENGEYKIVEGLEIDAFSQERINKTLAELQGEQ 321          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_RALSO (Malate dehydrogenase OS=Ralstonia solanacearum GN=mdh PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.017e-19
Identity = 45/102 (44.12%), Postives = 69/102 (67.65%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            F+ TV +RGAAII+AR             DH+RDWVLG+  G  V+MG+ S+G Y +P  +++ FPVT  NG++ +V+G  +D +SR+K+++T +EL EE+A
Sbjct:  222 FLPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKIVTMGIPSNGDYEIPQDVMFGFPVTTANGKYEVVKGFEVDAYSREKINITLKELEEERA 322          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDHC_ECHGR (Malate dehydrogenase, cytoplasmic OS=Echinococcus granulosus GN=MDH PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.017e-19
Identity = 49/106 (46.23%), Postives = 65/106 (61.32%), Query Frame = 1
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            V+  FI  VQ RGAA+I  RK            D +RDW  GT EG WVSM VYS G  Y  P  + +SFPVT ++G + +V GLS+DE+SR   +L+A+EL +E+
Sbjct:  219 VKEVFIPCVQNRGAAVIGLRKLSRAASAAKAIVDQMRDWWFGTKEGEWVSMSVYSTGDHYGAPKDIYFSFPVTIKDGHYKVVDGLSMDEWSRSLFNLSADELVDER 324          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDHB_DICDI (Probable malate dehydrogenase 2, mitochondrial OS=Dictyostelium discoideum GN=mdhB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.329e-19
Identity = 50/105 (47.62%), Postives = 64/105 (60.95%), Query Frame = 1
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRN-GEWTIVQGLSIDEFSRKKLDLTAEELSEE 318
            V+  FI TVQQRGAAII AR             DH+RDW  GT  G W SM +YS+G Y    GL +SFPV   N G++ IV+GL +D+FS+++ D T +EL  E
Sbjct:  236 VKDNFIPTVQQRGAAIIAARGLSSAASAASAAIDHMRDWTYGT-NGQWTSMAIYSEGEYGADKGLYFSFPVIVDNKGKYEIVKGLKLDQFSQERFDATRKELLSE 339          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_ACICJ (Malate dehydrogenase OS=Acidiphilium cryptum (strain JF-5) GN=mdh PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.865e-19
Identity = 47/104 (45.19%), Postives = 66/104 (63.46%), Query Frame = 1
Query:   10 RGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            R  FI TV +RGAA+I+AR             D +RDWV+G+ +G WVSM + SDGSY +P G+++  PVT + G  T V  L+ID F++ +LD+T  EL EE+
Sbjct:  217 RDVFIPTVGKRGAAVIEARGASSAASAANAAIDQVRDWVVGS-DGRWVSMAIPSDGSYGIPEGIMFGVPVTTQGGVVTRVPNLAIDAFAQSRLDITLNELKEER 319          
The following BLAST results are available for this feature:
BLAST of EY659394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
MDH_METPP1.569e-2048.51Malate dehydrogenase OS=Methylibium petroleiphilum... [more]
MDH1_RHOFD2.050e-2047.06Malate dehydrogenase 1 OS=Rhodoferax ferrireducens... [more]
MDH_CUPTR2.677e-2047.06Malate dehydrogenase OS=Cupriavidus taiwanensis (s... [more]
MDH_RALPJ4.566e-2047.06Malate dehydrogenase OS=Ralstonia pickettii (strai... [more]
MDH_LEPCP4.566e-2048.08Malate dehydrogenase OS=Leptothrix cholodnii (stra... [more]
MDH_ACIAC7.789e-2046.53Malate dehydrogenase OS=Acidovorax avenae subsp. c... [more]
MDH_RALSO1.017e-1944.12Malate dehydrogenase OS=Ralstonia solanacearum GN=... [more]
MDHC_ECHGR1.017e-1946.23Malate dehydrogenase, cytoplasmic OS=Echinococcus ... [more]
MDHB_DICDI1.329e-1947.62Probable malate dehydrogenase 2, mitochondrial OS=... [more]
MDH_ACICJ3.865e-1945.19Malate dehydrogenase OS=Acidiphilium cryptum (stra... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-F08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659394 ID=EY659394; Name=EY659394; organism=Citrus sinensis; type=EST; length=543bp
CCACGCGTCCGTGGAGAATTCATAACCACAGTCCAACAACGTGGTGCTGC
AATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTGCTAGCTCTG
CTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAGGGCACCTGG
GTCTCCATGGGGGTATACTCTGATGGTTCATACAATGTACCAGCTGGGCT
CATTTACTCATTCCCAGTAACCTGCCGCAACGGTGAATGGACAATTGTTC
AAGGACTCAGCATTGATGAATTCTCAAGGAAGAAGTTGGACTTGACAGCA
GAGGAGCTCTCCGAGGAGAAGGCCCTCGCATACTCATGTCTCTCTTAAAT
GCTTTCTTCCCTTCAATAGTGTGTTACCAAGGCCCTTAGCTTTGTCTGAG
TAGTTGGTATAGTTACAGTTTCGAATAAAACCATTGTTGAAACCTGGAGG
AACCATTGATGATGGAGAAGGCTTTCCATCTTATGTTGCTATTTCTGCAT
TTGAATATCGGGATTTTGGAGTTTTGTCTTCCCCGGGGAATAA
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