EY659394

Overview
NameEY659394
Unique NameEY659394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_RALME (Malate dehydrogenase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=mdh PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.594e-19
Identity = 45/102 (44.12%), Postives = 69/102 (67.65%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            F+ TV +RGAAII+AR             DH+ DWVLG+  G  V+MG+ S+G Y +P  +++ +PVT  NG++ IV+GL ID +S++K+++T +EL EE+A
Sbjct:  220 FLPTVGKRGAAIIEARGLSSAASAANAAIDHVHDWVLGS-NGKVVTMGIPSNGEYGIPNDVMFGYPVTTANGKYEIVKGLEIDAYSQEKINITLKELEEERA 320          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_MYCVP (Malate dehydrogenase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.611e-19
Identity = 46/102 (45.10%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   16 EFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            +FI TV +RG AII+AR             DHI DWV GTP+G W S+ + S G+Y V  GL+ SFP     G W IV+GL I+ FSR ++D +  EL  E+
Sbjct:  222 DFIPTVARRGTAIIEARGASSAASAANGAIDHIDDWVHGTPDGDWTSVALPSPGAYGVDEGLVCSFPCRSVGGRWEIVEGLDINPFSRARIDASVAELRTER 323          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_COREF (Malate dehydrogenase OS=Corynebacterium efficiens GN=mdh PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.274e-18
Identity = 43/102 (42.16%), Postives = 58/102 (56.86%), Query Frame = 1
Query:   16 EFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            EFI  V +RGA II+ R             DH+RDW+ GT   TW S  + S G+Y +P G+I   P   RNGEW +V+GL I++F R ++D   EEL  E+
Sbjct:  217 EFIPRVAKRGAEIIEVRGKSSAASAASSAVDHMRDWIQGTE--TWASAAIPSTGAYGIPEGIILGLPTVSRNGEWEVVEGLEINDFQRARIDANVEELQGER 316          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH2_BURTA (Malate dehydrogenase 2 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=mdh2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.521e-18
Identity = 45/103 (43.69%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   10 RGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 318
            R  FI  V QRG AII+AR             D +RDW+ G+ +G WVSM V SDGSY +  GL++  PV C  G +  V+ + ID F+R+++DL+  EL EE
Sbjct:  217 RESFIPKVAQRGTAIIEARGASSAASAANAAIDQMRDWIFGS-DGRWVSMSVPSDGSYGIAPGLMFGVPVICDGGRYERVKDIGIDAFARQRIDLSVRELQEE 318          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_DESPS (Malate dehydrogenase OS=Desulfotalea psychrophila GN=mdh PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.770e-17
Identity = 46/101 (45.54%), Postives = 60/101 (59.41%), Query Frame = 1
Query:   22 ITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            I  +QQRGAA+IKAR             DH+R+WVLG+  G WVSMGVYS G SY +   +++S PV C +G+W  V GL +  F R  L+ T  EL  E+
Sbjct:  219 IPIIQQRGAAVIKARGASSAASAASAAIDHMRNWVLGSG-GKWVSMGVYSRGNSYGLDEDIMFSLPVICEDGDWREVAGLELSSFQRAMLEATEAELQAER 318          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_CORGL (Malate dehydrogenase OS=Corynebacterium glutamicum GN=mdh PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.725e-17
Identity = 43/102 (42.16%), Postives = 55/102 (53.92%), Query Frame = 1
Query:   16 EFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            EFI  V  RGA II+ R             DH+RDWV GT    W S  + S G+Y +P G+    P   RNGEW IV+GL I +F R ++D  A+EL  E+
Sbjct:  222 EFIPRVANRGAEIIEVRGKSSAASAASSAIDHMRDWVQGTE--AWSSAAIPSTGAYGIPEGIFVGLPTVSRNGEWEIVEGLEISDFQRARIDANAQELQAER 321          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_CORGB (Malate dehydrogenase OS=Corynebacterium glutamicum (strain R) GN=mdh PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.725e-17
Identity = 43/102 (42.16%), Postives = 55/102 (53.92%), Query Frame = 1
Query:   16 EFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            EFI  V  RGA II+ R             DH+RDWV GT    W S  + S G+Y +P G+    P   RNGEW IV+GL I +F R ++D  A+EL  E+
Sbjct:  222 EFIPRVANRGAEIIEVRGKSSAASAASSAIDHMRDWVQGTE--AWSSAAIPSTGAYGIPEGIFVGLPTVSRNGEWEIVEGLEISDFQRARIDANAQELQAER 321          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_CORDI (Malate dehydrogenase OS=Corynebacterium diphtheriae GN=mdh PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.796e-16
Identity = 42/103 (40.78%), Postives = 57/103 (55.34%), Query Frame = 1
Query:   13 GEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            GEFI  V +RGA II+ R             DH+ DW+ GT +G W +  + SDGSY VP GLI+ FP    +G+W IVQ L + +F +  +     EL EE+
Sbjct:  217 GEFIPRVAKRGAEIIEVRGKSSAASAASSAIDHMHDWINGT-DGQWRTAAIPSDGSYGVPEGLIFGFPTISEDGQWKIVQDLELSDFQKDGIARNVTELEEER 318          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH2_RHOFD (Malate dehydrogenase 2 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=mdh2 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.796e-16
Identity = 43/99 (43.43%), Postives = 59/99 (59.60%), Query Frame = 1
Query:   22 ITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 318
            + TV +RG AI+ AR             D +RDW LGT  G W +MGV SDG+Y VPAGL++ FPV     ++ IV GL++D F+R  +D+   EL+ E
Sbjct:  224 VRTVDKRGEAILAARGLYAEASAASAAIDQMRDWWLGT-RGEWTTMGVVSDGAYGVPAGLVFGFPVITDCRDYRIVPGLAVDAFARGMIDVNVRELTAE 321          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_PARUW (Malate dehydrogenase OS=Protochlamydia amoebophila (strain UWE25) GN=mdh PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.911e-16
Identity = 47/104 (45.19%), Postives = 63/104 (60.58%), Query Frame = 1
Query:   16 EFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTC-RNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            +FI +VQ+RGAAII+AR             D +RD +L TP G W S  + SDG+ Y +  GLI+SFP    +NGE +IV GL  D F  +K+ LT +EL EE+
Sbjct:  218 DFIESVQKRGAAIIQARGKSSAASAASALLDAMRDRILPTPTGQWFSTALLSDGNPYGIEEGLIFSFPCRVKKNGELSIVSGLKWDAFLEEKIKLTEQELKEER 321          
The following BLAST results are available for this feature:
BLAST of EY659394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
MDH_RALME6.594e-1944.12Malate dehydrogenase OS=Ralstonia metallidurans (s... [more]
MDH_MYCVP8.611e-1945.10Malate dehydrogenase OS=Mycobacterium vanbaalenii ... [more]
MDH_COREF4.274e-1842.16Malate dehydrogenase OS=Corynebacterium efficiens ... [more]
MDH2_BURTA9.521e-1843.69Malate dehydrogenase 2 OS=Burkholderia thailandens... [more]
MDH_DESPS2.770e-1745.54Malate dehydrogenase OS=Desulfotalea psychrophila ... [more]
MDH_CORGL4.725e-1742.16Malate dehydrogenase OS=Corynebacterium glutamicum... [more]
MDH_CORGB4.725e-1742.16Malate dehydrogenase OS=Corynebacterium glutamicum... [more]
MDH_CORDI1.796e-1640.78Malate dehydrogenase OS=Corynebacterium diphtheria... [more]
MDH2_RHOFD1.796e-1643.43Malate dehydrogenase 2 OS=Rhodoferax ferrireducens... [more]
MDH_PARUW8.911e-1645.19Malate dehydrogenase OS=Protochlamydia amoebophila... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-F08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659394 ID=EY659394; Name=EY659394; organism=Citrus sinensis; type=EST; length=543bp
CCACGCGTCCGTGGAGAATTCATAACCACAGTCCAACAACGTGGTGCTGC
AATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTGCTAGCTCTG
CTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAGGGCACCTGG
GTCTCCATGGGGGTATACTCTGATGGTTCATACAATGTACCAGCTGGGCT
CATTTACTCATTCCCAGTAACCTGCCGCAACGGTGAATGGACAATTGTTC
AAGGACTCAGCATTGATGAATTCTCAAGGAAGAAGTTGGACTTGACAGCA
GAGGAGCTCTCCGAGGAGAAGGCCCTCGCATACTCATGTCTCTCTTAAAT
GCTTTCTTCCCTTCAATAGTGTGTTACCAAGGCCCTTAGCTTTGTCTGAG
TAGTTGGTATAGTTACAGTTTCGAATAAAACCATTGTTGAAACCTGGAGG
AACCATTGATGATGGAGAAGGCTTTCCATCTTATGTTGCTATTTCTGCAT
TTGAATATCGGGATTTTGGAGTTTTGTCTTCCCCGGGGAATAA
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