EY659394

Overview
NameEY659394
Unique NameEY659394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12605 contig Csv1_Contig12605:810..1352. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_LEPBP (Malate dehydrogenase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=mdh PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.195e-14
Identity = 41/105 (39.05%), Postives = 59/105 (56.19%), Query Frame = 1
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            ++G+FI+TVQ+RGAAII AR             D + + V  T  G W S   +S+G Y V  GLI+ +P+     +  IV GL I+ F ++K D+T  EL EE+
Sbjct:  215 LKGDFISTVQKRGAAIIAARGASSAASAANAVVDTVHNIVTPTKPGDWFSAACHSNGEYGVDKGLIFGYPLKSDGKKVEIVTGLEINAFGKEKFDITHNELKEER 319          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_LEPBA (Malate dehydrogenase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=mdh PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.195e-14
Identity = 41/105 (39.05%), Postives = 59/105 (56.19%), Query Frame = 1
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            ++G+FI+TVQ+RGAAII AR             D + + V  T  G W S   +S+G Y V  GLI+ +P+     +  IV GL I+ F ++K D+T  EL EE+
Sbjct:  215 LKGDFISTVQKRGAAIIAARGASSAASAANAVVDTVHNIVTPTKPGDWFSAACHSNGEYGVDKGLIFGYPLKSDGKKVEIVTGLEINAFGKEKFDITHNELKEER 319          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH1_BURVG (Malate dehydrogenase 1 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=mdh1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.867e-14
Identity = 38/100 (38.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 318
            FI  V +RG AII+AR             D +RDW+ G+  G WVSM + S G Y +P GL++  P  C  G + +V  L ID  +R ++D +  EL +E
Sbjct:  220 FIPEVARRGTAIIEARGASSAASAANAAIDQMRDWIRGSG-GRWVSMSIVSGGEYGIPRGLMFGMPTICSEGRYRVVPDLEIDALARARIDASVAELVDE 318          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_LEPIN (Malate dehydrogenase OS=Leptospira interrogans GN=mdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.890e-14
Identity = 41/105 (39.05%), Postives = 59/105 (56.19%), Query Frame = 1
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            ++G+FI  VQQRGA IIKAR             D +R  +  T  G   S  V SDGSY    GLI+ FP+     +  I+QG+S+++F+++K  +T EEL  E+
Sbjct:  215 LKGDFIKNVQQRGAEIIKARGASSAASAANGVVDTVRGIITPTAPGDCFSAAVVSDGSYGAEKGLIFGFPLKSDGKKVEIIQGISLNDFAKEKFKITHEELVSER 319          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_LEPIC (Malate dehydrogenase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=mdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.890e-14
Identity = 41/105 (39.05%), Postives = 59/105 (56.19%), Query Frame = 1
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            ++G+FI  VQQRGA IIKAR             D +R  +  T  G   S  V SDGSY    GLI+ FP+     +  I+QG+S+++F+++K  +T EEL  E+
Sbjct:  215 LKGDFIKNVQQRGAEIIKARGASSAASAANGVVDTVRGIITPTAPGDCFSAAVVSDGSYGAEKGLIFGFPLKSDGKKVEIIQGISLNDFAKEKFKITHEELVSER 319          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_RUBXD (Malate dehydrogenase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=mdh PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.341e-14
Identity = 44/103 (42.72%), Postives = 59/103 (57.28%), Query Frame = 1
Query:   16 EFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTC-RNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            E+I  V +RGA II+AR             DH+RDW+LG    +  SM V S G Y V  GL+ SFPV     GE+ I +GL + +F+R KL++T  EL EE+
Sbjct:  215 EYIPRVGKRGAEIIEARGASSAASAANAAIDHVRDWMLGA--DSLHSMAVASSGQYGVEEGLVSSFPVRLPGGGEYEIPEGLEVGDFARSKLEITIGELKEER 315          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_MAGSM (Malate dehydrogenase OS=Magnetococcus sp. (strain MC-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.140e-13
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            F+ TVQ RGAA+IKAR             DH+R  +  TP G      V ++G+Y V AGLI   P+T   +G+W+IV+G+ +  F + K D   +EL  E+
Sbjct:  217 FMPTVQNRGAAVIKARGASSAASAANAALDHVRSLITPTPAGDTFCAAVMANGAYGVDAGLIAGMPLTSTGHGDWSIVEGVPMSPFIKGKFDAVLDELRRER 318          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_LEPBL (Malate dehydrogenase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=mdh PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.054e-12
Identity = 40/105 (38.10%), Postives = 56/105 (53.33%), Query Frame = 1
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            ++G+FI  VQQRGA IIKAR             D +R  +  T  G   S  + SDGSY    GLI+ FP+     +  IVQGL  ++F+++K   T +EL  E+
Sbjct:  215 LKGDFIKNVQQRGAEIIKARGASSAASAANGVVDTVRAIITPTASGDAFSAAIASDGSYGTEKGLIFGFPLKSDGKKVGIVQGLPFNDFAKEKFKTTHDELISER 319          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_LEPBJ (Malate dehydrogenase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=mdh PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.054e-12
Identity = 40/105 (38.10%), Postives = 56/105 (53.33%), Query Frame = 1
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            ++G+FI  VQQRGA IIKAR             D +R  +  T  G   S  + SDGSY    GLI+ FP+     +  IVQGL  ++F+++K   T +EL  E+
Sbjct:  215 LKGDFIKNVQQRGAEIIKARGASSAASAANGVVDTVRAIITPTASGDAFSAAIASDGSYGTEKGLIFGFPLKSDGKKVGIVQGLPFNDFAKEKFKTTHDELISER 319          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_LEGPL (Malate dehydrogenase OS=Legionella pneumophila (strain Lens) GN=mdh PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.504e-12
Identity = 38/101 (37.62%), Postives = 54/101 (53.47%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            F++TVQQRGAA+IKAR               +   V  TP G   SM   S G Y V  GLI+SFP    +GE  +V+ +  ++F R++ ++T  EL  E+
Sbjct:  220 FVSTVQQRGAAVIKARGSSSAASAANAIITGVNHLVTDTPAGESFSMCRRSKGEYGVDEGLIFSFPCRREHGELKVVENMEFNDFGRERFNITLNELRSER 320          
The following BLAST results are available for this feature:
BLAST of EY659394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
MDH_LEPBP2.195e-1439.05Malate dehydrogenase OS=Leptospira biflexa serovar... [more]
MDH_LEPBA2.195e-1439.05Malate dehydrogenase OS=Leptospira biflexa serovar... [more]
MDH1_BURVG2.867e-1438.00Malate dehydrogenase 1 OS=Burkholderia vietnamiens... [more]
MDH_LEPIN4.890e-1439.05Malate dehydrogenase OS=Leptospira interrogans GN=... [more]
MDH_LEPIC4.890e-1439.05Malate dehydrogenase OS=Leptospira interrogans ser... [more]
MDH_RUBXD8.341e-1442.72Malate dehydrogenase OS=Rubrobacter xylanophilus (... [more]
MDH_MAGSM4.140e-1338.24Malate dehydrogenase OS=Magnetococcus sp. (strain ... [more]
MDH_LEPBL2.054e-1238.10Malate dehydrogenase OS=Leptospira borgpetersenii ... [more]
MDH_LEPBJ2.054e-1238.10Malate dehydrogenase OS=Leptospira borgpetersenii ... [more]
MDH_LEGPL3.504e-1237.62Malate dehydrogenase OS=Legionella pneumophila (st... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-F08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659394 ID=EY659394; Name=EY659394; organism=Citrus sinensis; type=EST; length=543bp
CCACGCGTCCGTGGAGAATTCATAACCACAGTCCAACAACGTGGTGCTGC
AATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTGCTAGCTCTG
CTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAGGGCACCTGG
GTCTCCATGGGGGTATACTCTGATGGTTCATACAATGTACCAGCTGGGCT
CATTTACTCATTCCCAGTAACCTGCCGCAACGGTGAATGGACAATTGTTC
AAGGACTCAGCATTGATGAATTCTCAAGGAAGAAGTTGGACTTGACAGCA
GAGGAGCTCTCCGAGGAGAAGGCCCTCGCATACTCATGTCTCTCTTAAAT
GCTTTCTTCCCTTCAATAGTGTGTTACCAAGGCCCTTAGCTTTGTCTGAG
TAGTTGGTATAGTTACAGTTTCGAATAAAACCATTGTTGAAACCTGGAGG
AACCATTGATGATGGAGAAGGCTTTCCATCTTATGTTGCTATTTCTGCAT
TTGAATATCGGGATTTTGGAGTTTTGTCTTCCCCGGGGAATAA
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