EY659394

Overview
NameEY659394
Unique NameEY659394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12605 contig Csv1_Contig12605:810..1352. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_MYCBT (Malate dehydrogenase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=mdh PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.499e-26
Identity = 58/106 (54.72%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            +  EFI TV +RGAAII AR             D  RDW+LGTP   WVSM V SDGSY VP GLI SFPVT + G WTIV GL IDEFSR ++D +  EL++E++
Sbjct:  216 IEDEFIPTVAKRGAAIIDARGASSAASAASATIDAARDWLLGTPADDWVSMAVVSDGSYGVPEGLISSFPVTTKGGNWTIVSGLEIDEFSRGRIDKSTAELADERS 321          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_MYCBP (Malate dehydrogenase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=mdh PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.499e-26
Identity = 58/106 (54.72%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            +  EFI TV +RGAAII AR             D  RDW+LGTP   WVSM V SDGSY VP GLI SFPVT + G WTIV GL IDEFSR ++D +  EL++E++
Sbjct:  216 IEDEFIPTVAKRGAAIIDARGASSAASAASATIDAARDWLLGTPADDWVSMAVVSDGSYGVPEGLISSFPVTTKGGNWTIVSGLEIDEFSRGRIDKSTAELADERS 321          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_MYCBO (Malate dehydrogenase OS=Mycobacterium bovis GN=mdh PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.499e-26
Identity = 58/106 (54.72%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            +  EFI TV +RGAAII AR             D  RDW+LGTP   WVSM V SDGSY VP GLI SFPVT + G WTIV GL IDEFSR ++D +  EL++E++
Sbjct:  216 IEDEFIPTVAKRGAAIIDARGASSAASAASATIDAARDWLLGTPADDWVSMAVVSDGSYGVPEGLISSFPVTTKGGNWTIVSGLEIDEFSRGRIDKSTAELADERS 321          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_ACIAD (Malate dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=mdh PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.241e-25
Identity = 56/102 (54.90%), Postives = 71/102 (69.61%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            F+ TV +RGAAII+AR             DH+RDW LGT  G WV+MG+ SDGSY +P G+IY  PVTC NGE+  V+GL IDEFSR+++D T +EL EE+A
Sbjct:  221 FLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGIPSDGSYGIPEGVIYGVPVTCENGEYKRVEGLEIDEFSRERMDKTLQELEEERA 321          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_CHRVO (Malate dehydrogenase OS=Chromobacterium violaceum GN=mdh PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.620e-25
Identity = 58/105 (55.24%), Postives = 71/105 (67.62%), Query Frame = 1
Query:   10 RGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            R  F+ TV +RGAAII+AR             DHIRDWVLGT  G WV+MGV SDGSY +P G++Y  PV C NGE+  V+GL ID FSR+++DLT  EL EE+A
Sbjct:  216 RDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHIRDWVLGT-NGKWVTMGVPSDGSYGIPEGVMYGVPVVCENGEYKRVEGLEIDAFSRERMDLTLAELEEERA 319          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_SACEN (Malate dehydrogenase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=mdh PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.116e-25
Identity = 58/101 (57.43%), Postives = 67/101 (66.34%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            FI TV +RGAAII+AR             DHI  WV GTPEG W S  V SDGSY VP GLI SFPV  R+G + IVQGL IDEFSR+++D +  ELSEE+
Sbjct:  219 FIPTVAKRGAAIIEARGASSAASAANAAIDHIHTWVNGTPEGDWTSAAVVSDGSYGVPEGLISSFPVVARDGRYEIVQGLEIDEFSRQRIDASVNELSEER 319          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_AZOSB (Malate dehydrogenase OS=Azoarcus sp. (strain BH72) GN=mdh PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.116e-25
Identity = 57/101 (56.44%), Postives = 71/101 (70.30%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            F+ TV +RGAAII+AR             DHIRDWVLG+  G WV+MG+ SDGSY +P G+IY FPVT  NGE+ IVQGL IDEFSR+++ +T  EL EE+
Sbjct:  223 FLPTVGKRGAAIIEARGLSSAASAANAAIDHIRDWVLGS-NGEWVTMGIPSDGSYGIPEGVIYGFPVTTENGEYKIVQGLEIDEFSRERMTVTLNELLEER 322          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_PSYA2 (Malate dehydrogenase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.610e-25
Identity = 56/104 (53.85%), Postives = 69/104 (66.35%), Query Frame = 1
Query:   13 GEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDE-FSRKKLDLTAEELSEEK 321
            G +I  VQQRGAAIIKAR              H+R WVLGT E  WVSMGVYS+G Y +  GLIYSFP TC NG+W+IV G+ +   FS++K+  T +ELSEE+
Sbjct:  218 GTYIPEVQQRGAAIIKARGASSAASAANAAIAHMRTWVLGTDENDWVSMGVYSNGEYGIAKGLIYSFPCTCTNGDWSIVDGVDVSSAFSKEKMAATEQELSEER 321          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_ACIBY (Malate dehydrogenase OS=Acinetobacter baumannii (strain AYE) GN=mdh PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.610e-25
Identity = 56/102 (54.90%), Postives = 71/102 (69.61%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            F+ TV +RGAAII+AR             DH+RDW LGT  G WV+MGV SDGSY +P G+++ FPVT  NGE+ IVQGL IDEFSR++++ T  EL EE+A
Sbjct:  221 FLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGEYKIVQGLEIDEFSRERINFTLNELEEERA 321          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_ACIBT (Malate dehydrogenase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=mdh PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 3.610e-25
Identity = 56/102 (54.90%), Postives = 71/102 (69.61%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            F+ TV +RGAAII+AR             DH+RDW LGT  G WV+MGV SDGSY +P G+++ FPVT  NGE+ IVQGL IDEFSR++++ T  EL EE+A
Sbjct:  221 FLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGEYKIVQGLEIDEFSRERINFTLNELEEERA 321          
The following BLAST results are available for this feature:
BLAST of EY659394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
MDH_MYCBT9.499e-2654.72Malate dehydrogenase OS=Mycobacterium bovis (strai... [more]
MDH_MYCBP9.499e-2654.72Malate dehydrogenase OS=Mycobacterium bovis (strai... [more]
MDH_MYCBO9.499e-2654.72Malate dehydrogenase OS=Mycobacterium bovis GN=mdh... [more]
MDH_ACIAD1.241e-2554.90Malate dehydrogenase OS=Acinetobacter sp. (strain ... [more]
MDH_CHRVO1.620e-2555.24Malate dehydrogenase OS=Chromobacterium violaceum ... [more]
MDH_SACEN2.116e-2557.43Malate dehydrogenase OS=Saccharopolyspora erythrae... [more]
MDH_AZOSB2.116e-2556.44Malate dehydrogenase OS=Azoarcus sp. (strain BH72)... [more]
MDH_PSYA23.610e-2553.85Malate dehydrogenase OS=Psychrobacter arcticus (st... [more]
MDH_ACIBY3.610e-2554.90Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_ACIBT3.610e-2554.90Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-F08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659394 ID=EY659394; Name=EY659394; organism=Citrus sinensis; type=EST; length=543bp
CCACGCGTCCGTGGAGAATTCATAACCACAGTCCAACAACGTGGTGCTGC
AATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTGCTAGCTCTG
CTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAGGGCACCTGG
GTCTCCATGGGGGTATACTCTGATGGTTCATACAATGTACCAGCTGGGCT
CATTTACTCATTCCCAGTAACCTGCCGCAACGGTGAATGGACAATTGTTC
AAGGACTCAGCATTGATGAATTCTCAAGGAAGAAGTTGGACTTGACAGCA
GAGGAGCTCTCCGAGGAGAAGGCCCTCGCATACTCATGTCTCTCTTAAAT
GCTTTCTTCCCTTCAATAGTGTGTTACCAAGGCCCTTAGCTTTGTCTGAG
TAGTTGGTATAGTTACAGTTTCGAATAAAACCATTGTTGAAACCTGGAGG
AACCATTGATGATGGAGAAGGCTTTCCATCTTATGTTGCTATTTCTGCAT
TTGAATATCGGGATTTTGGAGTTTTGTCTTCCCCGGGGAATAA
back to top